CmoCh08G000440.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh08G000440.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Photosystem II reaction center Psb28 protein
Location	Cmo_Chr08: 230588 .. 231597 (+)
Sequence length	927
RNA-Seq Expression	CmoCh08G000440.1
Synteny	CmoCh08G000440.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTAGTGAATGGCTCTCCTTACACAGCTTCCCCATCTTCAAACCACACCATTCTGCCTTTTATCTCTCTCTCTCTCGCTCTCTCTGGTCTCTGGTCTCTCCCTCTCTGCACTACCATTGCGTTTCAATGGCGACTCTGCAATCTCTCGCCTCCACTCCCCATCTGCATCATCCTTCATCCACCAAAGGTAATTCTATCACTCTCTCCCTTCCCACTTTGCACCCTTAATTCTTATCTGCAAGTTAAACACTACCTCCCTGCTCTCTTTAGTTTTCGCTTCCACCACACTCCACCGGAGCGCCTTCTCCGCATTCTACGGCCGCTCTCTTAGCGTCTTCGGCGGAAAATGCCAGACGCTCGGTCGGCGGAGATGTGAAGCGCACGGACGGCCTCGGAATCCGATCGTGATGATGATGGTTCGGCCGAAGATTCAGTTCATCCAGGGCACGGACGAGCAGACGGTGCCGGACGTGAGACTGACCAAATCGCGAGACGGCACCAACGGAATGGCCATTTTCAAGTTCGATGAACCGTCGGTGTTCGACTCGTCGGCTGAGGTTGGAGACATTACAGGATTCTACATGATCGATGAGGAAGGCGTGATTCAGTCGGTGGATGTGAATGCCAAGTTCATCAACGGGAAGCCGGCAGGAATCGAGGCCAAGTACGTGATGCGGACTCCGAGGGAGTGGGACAGGTTCATGAGATTCATGGAGCGATACTCCAACGCCAATGGCTTGCAGTTCGTCAAGAAATGAAAATCGCTTAATCTGGTATCTGTTCCTCATTCTTAATTCTTTTTTCCTTCTGATTAGATTGATCTGTTTCAGCCAATTTTGTTTGGCTTTGAATCACGATCAATACTGTGATCATGCTGATGGGTTAAAGAGTTAATTGGAAATGTGTTGTATGTTTCTATCCCCTCTTCTTTCTTCAACTAGATCAAATTCGTTCTTGTTCATGTTATCTTCCACACAAAAGAAACAAAAATCAAGGTGCTTACAAATTAG

mRNA sequence

ATTAGTGAATGGCTCTCCTTACACAGCTTCCCCATCTTCAAACCACACCATTCTGCCTTTTATCTCTCTCTCTCTCGCTCTCTCTGGTCTCTGGTCTCTCCCTCTCTGCACTACCATTGCGTTTCAATGGCGACTCTGCAATCTCTCGCCTCCACTCCCCATCTGCATCATCCTTCATCCACCAAAGTTTTCGCTTCCACCACACTCCACCGGAGCGCCTTCTCCGCATTCTACGGCCGCTCTCTTAGCGTCTTCGGCGGAAAATGCCAGACGCTCGGTCGGCGGAGATGTGAAGCGCACGGACGGCCTCGGAATCCGATCGTGATGATGATGGTTCGGCCGAAGATTCAGTTCATCCAGGGCACGGACGAGCAGACGGTGCCGGACGTGAGACTGACCAAATCGCGAGACGGCACCAACGGAATGGCCATTTTCAAGTTCGATGAACCGTCGGTGTTCGACTCGTCGGCTGAGGTTGGAGACATTACAGGATTCTACATGATCGATGAGGAAGGCGTGATTCAGTCGGTGGATGTGAATGCCAAGTTCATCAACGGGAAGCCGGCAGGAATCGAGGCCAAGTACGTGATGCGGACTCCGAGGGAGTGGGACAGGTTCATGAGATTCATGGAGCGATACTCCAACGCCAATGGCTTGCAGTTCGTCAAGAAATGAAAATCGCTTAATCTGGTATCTGTTCCTCATTCTTAATTCTTTTTTCCTTCTGATTAGATTGATCTGTTTCAGCCAATTTTGTTTGGCTTTGAATCACGATCAATACTGTGATCATGCTGATGGGTTAAAGAGTTAATTGGAAATGTGTTGTATGTTTCTATCCCCTCTTCTTTCTTCAACTAGATCAAATTCGTTCTTGTTCATGTTATCTTCCACACAAAAGAAACAAAAATCAAGGTGCTTACAAATTAG

Coding sequence (CDS)

ATGGCGACTCTGCAATCTCTCGCCTCCACTCCCCATCTGCATCATCCTTCATCCACCAAAGTTTTCGCTTCCACCACACTCCACCGGAGCGCCTTCTCCGCATTCTACGGCCGCTCTCTTAGCGTCTTCGGCGGAAAATGCCAGACGCTCGGTCGGCGGAGATGTGAAGCGCACGGACGGCCTCGGAATCCGATCGTGATGATGATGGTTCGGCCGAAGATTCAGTTCATCCAGGGCACGGACGAGCAGACGGTGCCGGACGTGAGACTGACCAAATCGCGAGACGGCACCAACGGAATGGCCATTTTCAAGTTCGATGAACCGTCGGTGTTCGACTCGTCGGCTGAGGTTGGAGACATTACAGGATTCTACATGATCGATGAGGAAGGCGTGATTCAGTCGGTGGATGTGAATGCCAAGTTCATCAACGGGAAGCCGGCAGGAATCGAGGCCAAGTACGTGATGCGGACTCCGAGGGAGTGGGACAGGTTCATGAGATTCATGGAGCGATACTCCAACGCCAATGGCTTGCAGTTCGTCAAGAAATGA

Protein sequence

MATLQSLASTPHLHHPSSTKVFASTTLHRSAFSAFYGRSLSVFGGKCQTLGRRRCEAHGRPRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVKK

Homology

[Close]

BLAST of CmoCh08G000440.1 vs. ExPASy Swiss-Prot
Match: Q0JG75 (Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PSB28 PE=2 SV=2)

HSP 1 Score: 222.2 bits (565), Expect = 4.6e-57
Identity = 114/154 (74.03%), Postives = 126/154 (81.82%), Query Frame = 0


Query: 29  RSAFSAFYGRSLSVFGGKCQTLGRRRCEAHGRPRNPIVMMMVRPKIQFIQGTDEQTVPDV 88
           +S  S+F G SL     K  +L R       RP   +VMM  RP IQFIQGTDEQT+PDV
Sbjct: 33  QSLHSSFGGVSLQCRRTKPASLHR------SRPSMQVVMMAARPAIQFIQGTDEQTIPDV 92

Query: 89  RLTKSRDGTNGMAIFKFDEPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAG 148
           RLTKSRDGTNG+AIF FD+PSVFDSSAE+GDITGFYMID+EGV+QSVDV+AKF+NGKPA 
Sbjct: 93  RLTKSRDGTNGVAIFTFDQPSVFDSSAELGDITGFYMIDDEGVLQSVDVSAKFVNGKPAL 152

Query: 149 IEAKYVMRTPREWDRFMRFMERYSNANGLQFVKK 183
           IEAKYVMRTPREWDRFMRFMERYS ANGLQFVKK
Sbjct: 153 IEAKYVMRTPREWDRFMRFMERYSQANGLQFVKK 180

[Close]

BLAST of CmoCh08G000440.1 vs. ExPASy Swiss-Prot
Match: Q8W0Y8 (Photosystem II reaction center PSB28 protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB28 PE=2 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 5.9e-52
Identity = 108/188 (57.45%), Postives = 138/188 (73.40%), Query Frame = 0


Query: 1   MATLQSLASTPHLHH-----PSSTKVFASTTLHRSAFSAFYGRSLSVFGGKCQTLGRRRC 60
           MA ++S+ S   ++H     P S  V +S ++     S+F G  +S+   + Q   R   
Sbjct: 1   MACVRSIGSLTSVNHSQRNVPRSGIVLSSCSVLPIKSSSFTGSPVSL--PRAQPSSRTAL 60

Query: 61  EAHGRPRNPI-VMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSS 120
               RP  P+ + MMV+P +QFIQGTDE T+PDV+LT+SRDG+NGMA+F FD+PSVFDSS
Sbjct: 61  ----RPMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSVFDSS 120

Query: 121 AEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 180
            EVG+ITG YMIDEEGVIQS DVNA+F+NGKP GI AK++MR+P+EWDRFMRFMERYS+ 
Sbjct: 121 GEVGEITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFMERYSDQ 180

Query: 181 NGLQFVKK 183
           NGLQFVKK
Sbjct: 181 NGLQFVKK 182

[Close]

BLAST of CmoCh08G000440.1 vs. ExPASy Swiss-Prot
Match: P49508 (Photosystem II reaction center Psb28 protein OS=Trieres chinensis OX=1514140 GN=psb28 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.9e-34
Identity = 66/110 (60.00%), Postives = 88/110 (80.00%), Query Frame = 0


Query: 73  KIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFD-SSAEVGDITGFYMIDEEGV 132
           KIQFI+G DE+ +PDVRLT+SRDG+ G A F+F  P++ D S+A+ G+ITG Y+ID+EG 
Sbjct: 4   KIQFIKGLDEKVLPDVRLTRSRDGSTGTATFRFKNPNILDKSTAKEGEITGMYLIDQEGT 63

Query: 133 IQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK 182
           +++ DVNA+FINGKP  IE+ Y+M++P  WDRFMRFMERY  +NGL F K
Sbjct: 64  LETRDVNAQFINGKPEAIESIYIMKSPEAWDRFMRFMERYGESNGLVFTK 113

[Close]

BLAST of CmoCh08G000440.1 vs. ExPASy Swiss-Prot
Match: Q00UI6 (Photosystem II reaction center psb28 protein, chloroplastic OS=Ostreococcus tauri OX=70448 GN=psb28 PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 4.2e-34
Identity = 68/121 (56.20%), Postives = 90/121 (74.38%), Query Frame = 0


Query: 62  RNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVGDIT 121
           R+ +V       IQF++G +E  VP+VRLT+S+DG+NG A F F +P VF++    GDIT
Sbjct: 29  RSVVVRAGTTTSIQFVKGQNETAVPEVRLTRSKDGSNGTAFFIFSDPDVFENGQ--GDIT 88

Query: 122 GFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK 181
           G ++ DEEG + +VDVNAKF+NGKP GIEA+YVM+T  +W+RFMRFMERY+  NGL F K
Sbjct: 89  GMFLTDEEGEMSTVDVNAKFVNGKPTGIEARYVMKTEADWNRFMRFMERYAEDNGLGFSK 147

Query: 182 K 183
           K
Sbjct: 149 K 147

[Close]

BLAST of CmoCh08G000440.1 vs. ExPASy Swiss-Prot
Match: A0T0H5 (Photosystem II reaction center Psb28 protein OS=Phaeodactylum tricornutum (strain CCAP 1055/1) OX=556484 GN=psb28 PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 4.2e-34
Identity = 64/110 (58.18%), Postives = 88/110 (80.00%), Query Frame = 0


Query: 73  KIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFD-SSAEVGDITGFYMIDEEGV 132
           KIQFI+G DE+ +PDVRLT+S+DG+ G A F+F  P++ D ++A+ G+ITG Y+IDEEG+
Sbjct: 4   KIQFIKGLDEKVLPDVRLTRSKDGSTGTATFRFKNPNILDKTTAKEGEITGMYLIDEEGI 63

Query: 133 IQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK 182
           +++ DVNA+F+NGKP  IE+ Y+M++P  WDRFMRFMERY   NGL F K
Sbjct: 64  LETRDVNARFVNGKPEAIESIYIMKSPEAWDRFMRFMERYGETNGLVFSK 113

[Close]

BLAST of CmoCh08G000440.1 vs. ExPASy TrEMBL
Match: A0A6J1H6H6 (Photosystem II reaction center Psb28 protein OS=Cucurbita moschata OX=3662 GN=LOC111460964 PE=3 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 8.7e-99
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MATLQSLASTPHLHHPSSTKVFASTTLHRSAFSAFYGRSLSVFGGKCQTLGRRRCEAHGR 60
           MATLQSLASTPHLHHPSSTKVFASTTLHRSAFSAFYGRSLSVFGGKCQTLGRRRCEAHGR
Sbjct: 1   MATLQSLASTPHLHHPSSTKVFASTTLHRSAFSAFYGRSLSVFGGKCQTLGRRRCEAHGR 60

Query: 61  PRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVGDI 120
           PRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVGDI
Sbjct: 61  PRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVGDI 120

Query: 121 TGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFV 180
           TGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFV
Sbjct: 121 TGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFV 180

Query: 181 KK 183
           KK
Sbjct: 181 KK 182

[Close]

BLAST of CmoCh08G000440.1 vs. ExPASy TrEMBL
Match: A0A6J1KY50 (Photosystem II reaction center Psb28 protein OS=Cucurbita maxima OX=3661 GN=LOC111498173 PE=3 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 8.1e-97
Identity = 179/182 (98.35%), Postives = 180/182 (98.90%), Query Frame = 0


Query: 1   MATLQSLASTPHLHHPSSTKVFASTTLHRSAFSAFYGRSLSVFGGKCQTLGRRRCEAHGR 60
           MATLQSLASTPHLHHPSSTKVFAS TLHRSAFSAFYGRSLSV GGKCQTLGRRRCEAHGR
Sbjct: 40  MATLQSLASTPHLHHPSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRCEAHGR 99

Query: 61  PRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVGDI 120
           PRNPIVMMMV+PKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVGDI
Sbjct: 100 PRNPIVMMMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVGDI 159

Query: 121 TGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFV 180
           TGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFV
Sbjct: 160 TGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFV 219

Query: 181 KK 183
           KK
Sbjct: 220 KK 221

[Close]

BLAST of CmoCh08G000440.1 vs. ExPASy TrEMBL
Match: A0A6J1JWT9 (Photosystem II reaction center Psb28 protein OS=Cucurbita maxima OX=3661 GN=LOC111488181 PE=3 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 3.7e-81
Identity = 161/188 (85.64%), Postives = 168/188 (89.36%), Query Frame = 0


Query: 1   MATLQSLAST----PHLHHPSS--TKVFASTTLHRSAFSAFYGRSLSVFGGKCQTLGRRR 60
           MATLQSLAST    PHLHHPSS  TK FAS  LH SAFSAF+GRSL+V GGKCQT+ RRR
Sbjct: 37  MATLQSLASTSLSSPHLHHPSSTNTKAFASARLHSSAFSAFHGRSLNVSGGKCQTVTRRR 96

Query: 61  CEAHGRPRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSS 120
           C+ HGR  N I  +MV PKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKF++PSVFDSS
Sbjct: 97  CKPHGRLSNTI--LMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSS 156

Query: 121 AEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 180
            EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA
Sbjct: 157 GEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 216

Query: 181 NGLQFVKK 183
           NGLQFVKK
Sbjct: 217 NGLQFVKK 222

[Close]

BLAST of CmoCh08G000440.1 vs. ExPASy TrEMBL
Match: A0A6J1JMC2 (Photosystem II reaction center Psb28 protein OS=Cucurbita maxima OX=3661 GN=LOC111488181 PE=3 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 1.8e-80
Identity = 160/189 (84.66%), Postives = 167/189 (88.36%), Query Frame = 0


Query: 1   MATLQSLAST----PHLHHPSSTK---VFASTTLHRSAFSAFYGRSLSVFGGKCQTLGRR 60
           MATLQSLAST    PHLHHPSST     FAS  LH SAFSAF+GRSL+V GGKCQT+ RR
Sbjct: 37  MATLQSLASTSLSSPHLHHPSSTNTKAAFASARLHSSAFSAFHGRSLNVSGGKCQTVTRR 96

Query: 61  RCEAHGRPRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDS 120
           RC+ HGR  N I  +MV PKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKF++PSVFDS
Sbjct: 97  RCKPHGRLSNTI--LMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDS 156

Query: 121 SAEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSN 180
           S EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSN
Sbjct: 157 SGEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSN 216

Query: 181 ANGLQFVKK 183
           ANGLQFVKK
Sbjct: 217 ANGLQFVKK 223

[Close]

BLAST of CmoCh08G000440.1 vs. ExPASy TrEMBL
Match: A0A6J1GP93 (Photosystem II reaction center Psb28 protein OS=Cucurbita moschata OX=3662 GN=LOC111455888 PE=3 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 2.4e-80
Identity = 159/188 (84.57%), Postives = 167/188 (88.83%), Query Frame = 0


Query: 1   MATLQSLAST----PHLHHPSS--TKVFASTTLHRSAFSAFYGRSLSVFGGKCQTLGRRR 60
           MATLQSLAST    PHLHHPSS  TK  AS  LH S FSAF+GRSL+V GGKCQT+ RRR
Sbjct: 44  MATLQSLASTSLSSPHLHHPSSTNTKACASARLHSSVFSAFHGRSLNVSGGKCQTVTRRR 103

Query: 61  CEAHGRPRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSS 120
           C+ +GRP N I  +MV PKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKF++PSVFDSS
Sbjct: 104 CQPYGRPSNTI--LMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSS 163

Query: 121 AEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 180
            EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA
Sbjct: 164 GEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 223

Query: 181 NGLQFVKK 183
           NGLQFVKK
Sbjct: 224 NGLQFVKK 229

[Close]

BLAST of CmoCh08G000440.1 vs. NCBI nr
Match: XP_022960122.1 (photosystem II reaction center PSB28 protein, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 369.4 bits (947), Expect = 1.8e-98
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MATLQSLASTPHLHHPSSTKVFASTTLHRSAFSAFYGRSLSVFGGKCQTLGRRRCEAHGR 60
           MATLQSLASTPHLHHPSSTKVFASTTLHRSAFSAFYGRSLSVFGGKCQTLGRRRCEAHGR
Sbjct: 1   MATLQSLASTPHLHHPSSTKVFASTTLHRSAFSAFYGRSLSVFGGKCQTLGRRRCEAHGR 60

Query: 61  PRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVGDI 120
           PRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVGDI
Sbjct: 61  PRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVGDI 120

Query: 121 TGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFV 180
           TGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFV
Sbjct: 121 TGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFV 180

Query: 181 KK 183
           KK
Sbjct: 181 KK 182

[Close]

BLAST of CmoCh08G000440.1 vs. NCBI nr
Match: KAG6592844.1 (Photosystem II reaction center PSB28 protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025252.1 Photosystem II reaction center PSB28 protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 364.4 bits (934), Expect = 5.8e-97
Identity = 180/182 (98.90%), Postives = 180/182 (98.90%), Query Frame = 0


Query: 1   MATLQSLASTPHLHHPSSTKVFASTTLHRSAFSAFYGRSLSVFGGKCQTLGRRRCEAHGR 60
           MATLQSLASTPHLHHPSSTKVFAS TLHRSAFSAFYGRSLSV GGKCQTLGRRRCEAHGR
Sbjct: 1   MATLQSLASTPHLHHPSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRCEAHGR 60

Query: 61  PRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVGDI 120
           PRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVGDI
Sbjct: 61  PRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVGDI 120

Query: 121 TGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFV 180
           TGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFV
Sbjct: 121 TGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFV 180

Query: 181 KK 183
           KK
Sbjct: 181 KK 182

[Close]

BLAST of CmoCh08G000440.1 vs. NCBI nr
Match: XP_023005079.1 (photosystem II reaction center PSB28 protein, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 362.8 bits (930), Expect = 1.7e-96
Identity = 179/182 (98.35%), Postives = 180/182 (98.90%), Query Frame = 0


Query: 1   MATLQSLASTPHLHHPSSTKVFASTTLHRSAFSAFYGRSLSVFGGKCQTLGRRRCEAHGR 60
           MATLQSLASTPHLHHPSSTKVFAS TLHRSAFSAFYGRSLSV GGKCQTLGRRRCEAHGR
Sbjct: 40  MATLQSLASTPHLHHPSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRCEAHGR 99

Query: 61  PRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVGDI 120
           PRNPIVMMMV+PKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVGDI
Sbjct: 100 PRNPIVMMMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVGDI 159

Query: 121 TGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFV 180
           TGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFV
Sbjct: 160 TGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFV 219

Query: 181 KK 183
           KK
Sbjct: 220 KK 221

[Close]

BLAST of CmoCh08G000440.1 vs. NCBI nr
Match: XP_023514182.1 (photosystem II reaction center PSB28 protein, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 360.1 bits (923), Expect = 1.1e-95
Identity = 179/182 (98.35%), Postives = 179/182 (98.35%), Query Frame = 0


Query: 1   MATLQSLASTPHLHHPSSTKVFASTTLHRSAFSAFYGRSLSVFGGKCQTLGRRRCEAHGR 60
           MATLQSLASTPHLHHPSSTKVFAS TLHRSAFSAFYGRSLSV GGKCQTLGRRR EAHGR
Sbjct: 1   MATLQSLASTPHLHHPSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRFEAHGR 60

Query: 61  PRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVGDI 120
           PRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVGDI
Sbjct: 61  PRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVGDI 120

Query: 121 TGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFV 180
           TGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFV
Sbjct: 121 TGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFV 180

Query: 181 KK 183
           KK
Sbjct: 181 KK 182

[Close]

BLAST of CmoCh08G000440.1 vs. NCBI nr
Match: KAG6576078.1 (Photosystem II reaction center PSB28 protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 313.5 bits (802), Expect = 1.2e-81
Identity = 161/188 (85.64%), Postives = 168/188 (89.36%), Query Frame = 0


Query: 1   MATLQSLAST----PHLHHPSS--TKVFASTTLHRSAFSAFYGRSLSVFGGKCQTLGRRR 60
           MATLQSLAST    PHLHHPSS  TK FAS  LH S FSAF+GRSL+V GGKCQT+ RRR
Sbjct: 1   MATLQSLASTSLSSPHLHHPSSTNTKAFASARLHSSVFSAFHGRSLNVSGGKCQTVTRRR 60

Query: 61  CEAHGRPRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSS 120
           C+ HGRP N I  +MV PKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKF++PSVFDSS
Sbjct: 61  CQPHGRPSNTI--LMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSS 120

Query: 121 AEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 180
            EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA
Sbjct: 121 GEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 180

Query: 181 NGLQFVKK 183
           NGLQFVKK
Sbjct: 181 NGLQFVKK 186

[Close]

BLAST of CmoCh08G000440.1 vs. TAIR 10
Match: AT4G28660.1 (photosystem II reaction center PSB28 protein )

HSP 1 Score: 205.3 bits (521), Expect = 4.2e-53
Identity = 108/188 (57.45%), Postives = 138/188 (73.40%), Query Frame = 0


Query: 1   MATLQSLASTPHLHH-----PSSTKVFASTTLHRSAFSAFYGRSLSVFGGKCQTLGRRRC 60
           MA ++S+ S   ++H     P S  V +S ++     S+F G  +S+   + Q   R   
Sbjct: 1   MACVRSIGSLTSVNHSQRNVPRSGIVLSSCSVLPIKSSSFTGSPVSL--PRAQPSSRTAL 60

Query: 61  EAHGRPRNPI-VMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSS 120
               RP  P+ + MMV+P +QFIQGTDE T+PDV+LT+SRDG+NGMA+F FD+PSVFDSS
Sbjct: 61  ----RPMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSVFDSS 120

Query: 121 AEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 180
            EVG+ITG YMIDEEGVIQS DVNA+F+NGKP GI AK++MR+P+EWDRFMRFMERYS+ 
Sbjct: 121 GEVGEITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFMERYSDQ 180

Query: 181 NGLQFVKK 183
           NGLQFVKK
Sbjct: 181 NGLQFVKK 182

[Close]

BLAST of CmoCh08G000440.1 vs. TAIR 10
Match: AT4G28660.2 (photosystem II reaction center PSB28 protein )

HSP 1 Score: 203.8 bits (517), Expect = 1.2e-52
Identity = 93/124 (75.00%), Postives = 111/124 (89.52%), Query Frame = 0


Query: 60  RPRNPI-VMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVG 119
           RP  P+ + MMV+P +QFIQGTDE T+PDV+LT+SRDG+NGMA+F FD+PSVFDSS EVG
Sbjct: 74  RPMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSVFDSSGEVG 133

Query: 120 DITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQ 179
           +ITG YMIDEEGVIQS DVNA+F+NGKP GI AK++MR+P+EWDRFMRFMERYS+ NGLQ
Sbjct: 134 EITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFMERYSDQNGLQ 193

Query: 180 FVKK 183
           FVKK
Sbjct: 194 FVKK 197

The following BLAST results are available for this feature:

BLAST of CmoCh08G000440.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0JG75	4.6e-57	74.03	Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subs...	[more]
Q8W0Y8	5.9e-52	57.45	Photosystem II reaction center PSB28 protein, chloroplastic OS=Arabidopsis thali...	[more]
P49508	1.9e-34	60.00	Photosystem II reaction center Psb28 protein OS=Trieres chinensis OX=1514140 GN=...	[more]
Q00UI6	4.2e-34	56.20	Photosystem II reaction center psb28 protein, chloroplastic OS=Ostreococcus taur...	[more]
A0T0H5	4.2e-34	58.18	Photosystem II reaction center Psb28 protein OS=Phaeodactylum tricornutum (strai...	[more]

BLAST of CmoCh08G000440.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H6H6	8.7e-99	100.00	Photosystem II reaction center Psb28 protein OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1KY50	8.1e-97	98.35	Photosystem II reaction center Psb28 protein OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1JWT9	3.7e-81	85.64	Photosystem II reaction center Psb28 protein OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1JMC2	1.8e-80	84.66	Photosystem II reaction center Psb28 protein OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1GP93	2.4e-80	84.57	Photosystem II reaction center Psb28 protein OS=Cucurbita moschata OX=3662 GN=LO...	[more]

BLAST of CmoCh08G000440.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022960122.1	1.8e-98	100.00	photosystem II reaction center PSB28 protein, chloroplastic-like [Cucurbita mosc...	[more]
KAG6592844.1	5.8e-97	98.90	Photosystem II reaction center PSB28 protein, chloroplastic, partial [Cucurbita ...	[more]
XP_023005079.1	1.7e-96	98.35	photosystem II reaction center PSB28 protein, chloroplastic-like [Cucurbita maxi...	[more]
XP_023514182.1	1.1e-95	98.35	photosystem II reaction center PSB28 protein, chloroplastic-like [Cucurbita pepo...	[more]
KAG6576078.1	1.2e-81	85.64	Photosystem II reaction center PSB28 protein, chloroplastic, partial [Cucurbita ...	[more]

BLAST of CmoCh08G000440.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28660.1	4.2e-53	57.45	photosystem II reaction center PSB28 protein	[more]
AT4G28660.2	1.2e-52	75.00	photosystem II reaction center PSB28 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005610	Photosystem II Psb28, class 1	PFAM	PF03912	Psb28	coord: 74..179 e-value: 9.3E-43 score: 144.8
IPR005610	Photosystem II Psb28, class 1	TIGRFAM	TIGR03047	TIGR03047	coord: 74..180 e-value: 4.4E-45 score: 150.4
IPR005610	Photosystem II Psb28, class 1	PANTHER	PTHR34963	FAMILY NOT NAMED	coord: 2..182
IPR005610	Photosystem II Psb28, class 1	HAMAP	MF_01370	PSII_Psb28	coord: 71..180 score: 30.418152
IPR038676	Photosystem II Psb28, class 1 superfamily	GENE3D	2.40.30.220	Photosystem II Psb28	coord: 72..182 e-value: 3.6E-45 score: 154.8

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh08G000440	CmoCh08G000440	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh08G000440.1:exon:4520	CmoCh08G000440.1:exon:4520	exon
CmoCh08G000440.1:exon:4521	CmoCh08G000440.1:exon:4521	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh08G000440.1:five_prime_utr	CmoCh08G000440.1:five_prime_utr	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh08G000440.1:cds	CmoCh08G000440.1:cds	CDS
CmoCh08G000440.1:cds	CmoCh08G000440.1:cds_2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh08G000440.1:three_prime_utr	CmoCh08G000440.1:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh08G000440.1	CmoCh08G000440.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0016020	membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009654	photosystem II oxygen evolving complex