CmoCh08G000340.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh08G000340.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	U2 small nuclear ribonucleoprotein A'
Location	Cmo_Chr08: 174239 .. 182306 (-)
Sequence length	1143
RNA-Seq Expression	CmoCh08G000340.1
Synteny	CmoCh08G000340.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AACGTCGAGTCTTCTTTCGATCCACGCTGCGCTGCCTTTGATGTCGCTTGTCGCCGACGCGTTCCCTTCACTCACACTCGCCCTAAAGCCCTAAACCCCCGTCGTCGTCGTCGTCGTCCAGTGAACTAAACTCAGAAGAACATGGTGAGACTCACAGTCGATTTAATCTGGAAAAGCCCTCATTTCTTCAATGCCATTAAGGAGCGAGAACTGGACCTTCGAGGTTGTCTGTCTTTTCTCAACTCTTACTTCTTTCCCTATCTCGGCCACGCATTTCTTAACTCCTTTCTTCTCGTCTCCAGGAAACAAGATAGCAGTTATAGAAAACCTAGGTGCCACCGAGGTGAGTGATTTCTACCGCTTTATTTCTCTTGTTTTAAATCTGTGCAACACCAAGATCTGTCAAGTTCGATTCCGGAGTGTTTTTACCCTGCTATGATCGTACCTAACTTCATCATACTATTTCTCCTCTCGGGTTAGTTTTGTTGTAGTCTAAACTTCAAATTAAATTCCTACCAGCTATTTTATGGGGTTAATTGTTTTTCTGGTAAGTCGTCTTCCTTACATGCTGGTGAAAATCCTTCGGTGTGAGTTTTCATTTTCTTGTTTTGCTACGATCACTTGTACAATTTTGAAGGTTCAATGCAGTTTCATTTTACAAAAGACTCCGATTTTCAGCCATATGATGCCAAAATTCATTAACTAATTTAAATTTGTCTTACCGAGTGTCCTATTGTTCTTTTTAACCACAACTATCAGAACCTGAGCCCGAATATCATTTTTCTATGGAGTTATGGCCTTGTCATAGAACCGCTGACCTGGAAGTACTTCTGAAAACTCGTCTTCGGTTTCCTTTTTAAGCAAAGGTTGGGGTCAACGTTTCTTTAGAGAGAACCAAGCTTGAATGAAGAGGTGGTTCATAGTTTTCACATCCTTTCTGCATAAGTGATAGATTTGAGATTTGATGCGATATAGAAAGCACTGGACTCCTTTGCATTCTATCTTGAGTAACAAGACCTTAACCATATTTTTTAGAGTTGCAACTTTGCTCAGGTTGTTTGGAACCTCTATTTTGAAGTGTTTGGATTTCAGTCTTGTAAAAACAAATGTCTTAGGGAGATGATTGAACAGTTCCTTTCCCATCTGTTGTCTTGGGAGAAGGAGATGCTTTGTTGTAGGCAAGGATCTATGCTATGTTGCGAGACTTGTTGATATGGTAACCCTAGCTAGGTGAATCTAAGAACTCTCATAAATGCTTTGGATATGCAAACCGCTAGTTCACAAATGCTAAAACCCTCAAATCAATTTTTTTTCATTCCAGATGATTGTAACTCTTGGAAATTTGATTTAACAACCTTTTTAATAATAAGACCTTTAGATCTAAATATATCTAAGAGTCTCGAAGCAATAGAGAATCATCCCAAGGGAAAGTAAGATTCGATTACCTTGTTGATCGAATGTCTAAGGGATAGAATACTTGTTTGAGATTCGATCACTCCACAAGTAAGATTGATCAAGTCGAGCTTGAATGATTCTAAGCATGCAACACTACCCTACATAGAATTGCCAAAAAAAAAAAAAAAAAACTCTCGACTAAAAGAAAGCATAAATGCTCTTTTTACTAAATTCTTTAAGTCTACTTTACGCAGACAACATACATGGCTTTATATAGTATTAAAAAAAAACCCTTGACCTTCTATGAGACATTTCAAGGGTTGTAATTTTCATACTTTATGATCATAAGTAGCCACCGTGTAAATGTAACCTTAAAGTAAATAAAAAGCCTTAAAATATATTCATGAAATACTACAACTCTAAATTATCATCCACTCAAATTTTGCAACCATCCAAGAATAAATGAAGCTTGGTTCTTCTCTAATGTTTGCATTAATTGCAACTCGAATTTATCTTAGGGTAATTTGAACAACATTTTTGTTACATCTTCCTTAAAGTCATACTTTAGAGTGGTTGAGAGAGATTCTAGTGAAGTGTGGTTCCTTGTTAGGTTCTATGTTTCTCTTTGAACTTCCGTGATGAGACTGTTCTATAATTAATCTTTATGTCTTGTTTTACTTGATTGAAGCCTATTTCTTTAGTGCGGTTTCCTTTTGTAAGTGGTGGTTTTTGAATGCTTGTATATTCCTTCAATTTTTTCTCTTATTGAATGTTCAATTCTTTATAGAGTATATATATATATGTATAAAATAAACTTGGACCTGTTTAGGGAACTTACAGGTGTAAACCAAATAGGAGTAACTCTTATTGAATTTCCCCATATATGCAAGAGTAGTATTTATACTAGCATAACTCTTAACCGAAACTAACGAACCAAACCACTCCAACGGCTACCTACAGATTTATCATAGGATTATCTACATCACTTACCTTCCCAAATGAGTTCCACGAAAGTAGAACACAACTTGGACTAATTAGAGTTTAGTTTGAGGTTAACCAACATATGAGGAGAAAGGCCATTTGAATCGAGTTTCCAAACCAATCTACCTTATCAATGCTTGGCTTTACTAGAGTGATCTTAAAAGGGAGAGAAAAAAAAAAAAAAAAAAAATTCTCTCTTTAATTTTCTAGCAAACAATCTTCTCCTCAAGCTTACACCCCATTGATTCTCTCGGAAAGATTCTTGATGAGAGCTCCTTGGGTATTTGGGACAGAATTATTTTGAAAAGAAACAGAAGTGGCCTCTTTTGATAACCAAAATTTAGAAAGAGTACCATCATGGAAATTCTATCCACACAAGGCAGAAGTTTAGTAAATGAAGAATAAATTGTCTAAGAATTTGTGTCCTTTTACACGGCCTTATGTACAAAAGACAATGCCCTCTACAAATTTCCCCATGATCTTGGCTGGAGTCATATTGATCATCAGCAAGCTGCCTCCCTCGATGTTGTTTTCACCGAAGAAGAGGTGGGGAAGGCGATTCAGCATCTGGGCTCAACAAAACTCCAGGACCGGATGCTTTTATCTCAGATTTTTTTTTTTTTGCAAATGTTGGAACTTTACGAGAGCGGATATCTTGAGAGTATTCCAAGATTTTTTTTTTCTGAAACGAAGTTATCATTGGAAACCTAAACGAAACATACATATTTCTAATCTCAAAGAAACTGGATGCCCACATTGTTGCAGACTTCCGTCCCATAAGTCTCACGATAGGACTATATTAAATCGTAGCAAGGATATTATCACAATGTCTTGAAAAGGTTTTCCCCTTCACAATAACCGAGCAACAAACAAATTTTGTAGAGGGGTGACAAATTCTCGATGCATCCCTCATGGAAAACAAACTCATAGATGAATGGAAAAGAAAGAAACAAAAAGGTATAGCCATCAAACTTGACATGGAAAAGGCCTTCGACAAAGTTGATTGGACTTTCCTCGAAAACATTCTTGTGGCAAAAGGCTTTGGCTCAAAATGGCGAAGGTGGATAATAGGATGCATCTCATCCACAAACTTCTCCATCATCATCAATGGAAGTTTGAGAGGGAAGATTTATGCCACTCGGGATCACCGACAAGGAGATTCACTGTCCCCTCTTCTTTTCATCATGGTAATGGACGGCCGACTGACAAAAGAAAATGTGAAGGGCAGATAAAAGGTTTTCAAATTGGTAATGAAGGCTTAACCATCAAACCACCTTCAGTTCGCAGACGACACAATCCTCTTTTCTGACTTGGCAGATGCCTCTTCCATAAAGAACATGATCGACCGAACTTGCCATAGAGTGGGTGATGGAGGAAACACATCATTTTGGACCGACCCATGGATTGAAAACACCACACTAGCCCTGAGGTATCCACTTTTGTACAGGCTCTCTCATAGCAAAAAAGCCACAATCAAAGAAACGTGGAATGTTGTCAACAAATTCTGGGACCTAAAGTTCGGTAGGAATTTAAAGGATAATGAAGCAATAGAATGGGCCGAATTCAGCCTTGTCCTTGCCCCTGTGGTATTGTCAAACGTAGCAGACTCACTGACTTGGCTCCCCAGCGCTGACGGGGTCTTCTCTCCAAAATCTTTGATGATGAACATGGGGGAAAGTAGAAGTAATAAATCCCACGCTAGCAAAGACAGTATGGAAAAGACATCATCCTAAAAAGGTGAAGTTCTTCCTTTGGGAAATAGCACATTAAGCCATTATCACAAGTGAAAATCTTCAAAAAAAAGAATGTCTTACATCACTCTTTCTCCAAATTGGTGTCCATTATGCAAGAAAAAAAGTGAACCACTTATTTATGCAATGCACATATGCTCAGTATTTCTGAACAACGATTCTCAATATATTCAGATGACATCTCACATTTCCTAGGGAGGTAAAAGATCTATTGGACATGACCTTAACGTACCACCCTTTCTAGAATGAAAAAGTCCTACTGTGAAAAAACCTCATCATGACTTTCTTTAGAAATCTGTGGAAAGAAAGAAATCAGAGAATATTTGCAGAAAAGACACGGACTTACACAAAACTTTTCGACAATATTGTTTACCAAGCTATATCTTGGTGTTAACTGTCTAATATTTTTACTTCCTATAGTTATCCCTCGCTCATAGTAAATTGGGAAGGTCTTTTATAAACACCATGGATTAACATTCCTTTTGTAAATTTCAATCATCAATAAAATGACCTCTGATATATATATATTTTAATTATGTCTCTCATGTAAACTTAGTTGAGCCTGTAGTTTCAATAACTCCATGGCTAAAAGTCACCTCCAGGATCACCTGATTGGATAAGAACCATATTTACTATATAAAACTTTTCACCGAAAGCCTCCTCATGAAAGTATCTCCATAGCCACCTTATCAGTAAGGCTTCTTCATTGTGTCTCAGGTATCCCATGTTCAATCCACCTAAAGAAATAGGGACTCTGGAACGGCAGCCCACTTCCACTTGATTAAGTGACAACCTTAATTTAAGTTTTGTAAATAACATTCTCATTCTTATGTCTCAAGCTTCCAGGGTTGATTTCTCACTACCCTTGAGTACTTTGTTTTCAATTGAATAGAAATGATATTCCTTAATCCTTTATTTGAAAGATTTAGTCCAAAGTCTCTTGCAATATTGAGTTGGACTTGTGTTTGTTCACCTTATTCTTCCTTTCCAAGAGCCAAAAAAAAAGGAAGCAAAGAAAAGAAAATGCTGCCACCAAAAGTCTCTAGAAGGGTTTCCTGTTAAAAGAACTCAAAAGTGTATTTGCACCGAGGCCTCCAACCTTGTGGTGAGTGTATGTGTCCGTGCGCGTGGGTGGGGGAGGGGTGCACCAGCACACCACTAAGTTGCTTGAGAATTAGAGTGCCTTAAAGTAGAAGTAAAAGACCACAAAATATCAAAAGGTGGACCGAAGTTTCATTTTCTTTTTGACAAACCAATGCCCCCATCTCCTGTTAAATTGGACAGAATATATCAAGAAGGTGGCACCCTCACACAGTGCGCTAAATTTCATTAATATTCTTAACTAAATTTCATTAATATTCTTAACTTGAAGGTGCTTTCTCATCTAAACCCCAAGTTTCCCATTCCTTTTGCTGGTTGTATGAGGATAAAAAGTTTGTTAACTTATCTGGCTCTCCCAAAAGTGATGTCTACTCTTGGTTTTCTTTTATTTGTAACCATATAATGTTAGATTTCCTTGACCATAAATTTCAGGACCAATTTGATGCCATTGATTTGTCTGATAATGAGATTGTAAAGCTGGAAAATATGCCATATCTTAATCGATTGGGCACATTGCTGATCAATAATAATAGAATCACTCGTATTAATCCAAATATTGGAGGTGAGCTTTCCATTATGCTTTTATAGGATTATTTAGCAATCTTGTTTTTTGAAGTAAGTGTTCTAAAAAAGTTTATTTCTTCATTCTTGTCAGAGTTCTTGCCAAAATTACACACGTTAGTTCTTACGAACAACAGACTTGTGAACTTGGTAGAGATTGACCCGTTGGCGTCCCTTCCAAAACTTCAGTTTCTTAGTTTGTTAGACAACAATATTACGAAGAAGCCAAACTATAGATTGTATGTCATTCACAAGTTAAGGTCACTCCGGGTGCTTGATTTCAAGAAAGTCAGAAACAAGGTAACTTATTCCTGCATTCAAACCTTATTATTGATAAAATGGCTGTATCTTAACATATGTTTGTAAATTCTTAAAACTTCATTCGATAACAATTTTAAACAATTTTATTTTGGTTTAAGAAGTTATTTTAAAAATTTTAGCCAATGGTTCTCTATTATAAAATTCTTTACATATGTTCGTAAATTCTTAGACTTCATCCGATAAAAAAATAAAGAAATAAAGAAACCACCTACTTTCATGTACGATACATTAATAGATATCTCATGCCCCCTACATCTCTTCATTTCTTAACGTCAATGGCAGGAGAGATTGGAGGCTAGGAATTTATTTTCATCAAAAGAAGTTGAAGAAGAGGCAAAAAAGGAATCTGTGAAGACTTTTGTTCCAGGTGAGGTAGAGAATGCTTCCAAACCTGTGGAGGAGAAACAAACTTCAACCATGTCTGCACCAACACCGGAGCAAATTATAGCTATTAAGGTGTGTACATTCTATACTATCTAAAGTTTAAGAATCTCTTTCACTGAAACATATGTTTGCAAGTTGTCAAGATCTTCTGTTTTCTTACTGTTTAACTTTGTTGAGATTTAGGGCCTGCTACTTTTCTTGTCTGGGAAGAGGGCAAGTTCCAAAACTTTTACAATTGATTATCATTTCCTCACAAAAAAAGTATTACAAGGTGGTTATCGATGGGTCTTCATCCTCCCTTCTCTCTCTGGTCTAAGGAGCTCTTTCTATTCTAGGTTGGAGAGTCTTGTGTTTTTTATCTTGAGTTTGTCTCTTTCTTGTGTAAATCATTTTCTTCTCTCGATTCCTTCTCATCCTCGTTCTCACACCCTTTTGAAGCTAAACTTTATAACTTGGAGGTGGAAGGTGGTCAATTTTTCTTCAAGGCAGTCATAGATGGGAGGAATTATCCTTTAACTTAGAATGTAGAAATAAAATTTGTAGGATATAATTTAGAATTTTATTTATTTTCTAGAATCTAATTATTCTAATTATAAATCAATTATTCTTGATTCTTATTTTTAAACAAAAGTGATCAGTTAAAATTAAAGAAATTAAATCGAATAATCAATTTTTAGGGGGTCTTTTATAAATTGGGTGGGACCCGACTTTGTTATTAATTGTGGATATTTTTATTGGCGGGCTTGTTTTTTTGCAAGCCCTTGTGTGGTTTCTAATTAAAAAAAGTTGTAGAAGAGTGTTTGACCACCTTATGTTTCCAATTATGTTGTGCGATCAATTAACTCTCTATGCTACAGGCGGCCATTGTTAATTCCCAAACTCTTGAAGAGGTTGCAAGATTGGAACAGGTGTGCTTGGTTTTCTATTGTAAAAAAGGAAAAAGGGAAAAGAAAGATCTCTATTTAAATGTTAGTATGAGAATCATAACGTTCAAGAATTCTTCTTTGTTGCCAGGCACTAAAGTCAGGTCAGCTACCTGCAGATTTGAATCTTTTGGAAGATAATACTGTGACAAATACCACAAAAGATACAGACGATAAGACAATGTCTGATGGTGGAGATGAAGAAAATGTATCCAAGGATGCAAAAGAACAATCGAATGATGAATCTACACCTATGGAGCAGGTACCACTACTTTTATGCTAAATGAGTGATGCCTTTGTGCGGTTTTATTTTTTTTATTTTTTTAAAAGCTCATGTAAACTTAATACACGCCCCTCGTGCTGTTGTTTTCTCGCATTCCTGGTAAAGCTTGTTATCGCAAGCACATGTCTATTTACATAGCTAAGCTGTTCTAATATACAGTTAATTTTATGTAGGAATAGTAGATAATCGTTGCTCGTACTACTTGGTGGCTCATCTATTAGCTTTCATCGATTGGTGATCCTGTTGGGCTGATTTGTGGACATTTTAAAGAACTTTTGAGAAGTCCAAGCATGTCCCATCTTAGCCTGGGGACGTTAGACCTCTACTTCACCTCTTTTTTAGGAGTTGGTTCTTTTTCTCCCTTCTAG

mRNA sequence

AACGTCGAGTCTTCTTTCGATCCACGCTGCGCTGCCTTTGATGTCGCTTGTCGCCGACGCGTTCCCTTCACTCACACTCGCCCTAAAGCCCTAAACCCCCGTCGTCGTCGTCGTCGTCCAGTGAACTAAACTCAGAAGAACATGGTGAGACTCACAGTCGATTTAATCTGGAAAAGCCCTCATTTCTTCAATGCCATTAAGGAGCGAGAACTGGACCTTCGAGGAAACAAGATAGCAGTTATAGAAAACCTAGGTGCCACCGAGGACCAATTTGATGCCATTGATTTGTCTGATAATGAGATTGTAAAGCTGGAAAATATGCCATATCTTAATCGATTGGGCACATTGCTGATCAATAATAATAGAATCACTCGTATTAATCCAAATATTGGAGAGTTCTTGCCAAAATTACACACGTTAGTTCTTACGAACAACAGACTTGTGAACTTGGTAGAGATTGACCCGTTGGCGTCCCTTCCAAAACTTCAGTTTCTTAGTTTGTTAGACAACAATATTACGAAGAAGCCAAACTATAGATTGTATGTCATTCACAAGTTAAGGTCACTCCGGGTGCTTGATTTCAAGAAAGTCAGAAACAAGGAGAGATTGGAGGCTAGGAATTTATTTTCATCAAAAGAAGTTGAAGAAGAGGCAAAAAAGGAATCTGTGAAGACTTTTGTTCCAGGTGAGGTAGAGAATGCTTCCAAACCTGTGGAGGAGAAACAAACTTCAACCATGTCTGCACCAACACCGGAGCAAATTATAGCTATTAAGGCGGCCATTGTTAATTCCCAAACTCTTGAAGAGGTTGCAAGATTGGAACAGGCACTAAAGTCAGGTCAGCTACCTGCAGATTTGAATCTTTTGGAAGATAATACTGTGACAAATACCACAAAAGATACAGACGATAAGACAATGTCTGATGGTGGAGATGAAGAAAATGTATCCAAGGATGCAAAAGAACAATCGAATGATGAATCTACACCTATGGAGCAGCTTTCATCGATTGGTGATCCTGTTGGGCTGATTTGTGGACATTTTAAAGAACTTTTGAGAAGTCCAAGCATGTCCCATCTTAGCCTGGGGACGTTAGACCTCTACTTCACCTCTTTTTTAGGAGTTGGTTCTTTTTCTCCCTTCTAG

Coding sequence (CDS)

ATGGTGAGACTCACAGTCGATTTAATCTGGAAAAGCCCTCATTTCTTCAATGCCATTAAGGAGCGAGAACTGGACCTTCGAGGAAACAAGATAGCAGTTATAGAAAACCTAGGTGCCACCGAGGACCAATTTGATGCCATTGATTTGTCTGATAATGAGATTGTAAAGCTGGAAAATATGCCATATCTTAATCGATTGGGCACATTGCTGATCAATAATAATAGAATCACTCGTATTAATCCAAATATTGGAGAGTTCTTGCCAAAATTACACACGTTAGTTCTTACGAACAACAGACTTGTGAACTTGGTAGAGATTGACCCGTTGGCGTCCCTTCCAAAACTTCAGTTTCTTAGTTTGTTAGACAACAATATTACGAAGAAGCCAAACTATAGATTGTATGTCATTCACAAGTTAAGGTCACTCCGGGTGCTTGATTTCAAGAAAGTCAGAAACAAGGAGAGATTGGAGGCTAGGAATTTATTTTCATCAAAAGAAGTTGAAGAAGAGGCAAAAAAGGAATCTGTGAAGACTTTTGTTCCAGGTGAGGTAGAGAATGCTTCCAAACCTGTGGAGGAGAAACAAACTTCAACCATGTCTGCACCAACACCGGAGCAAATTATAGCTATTAAGGCGGCCATTGTTAATTCCCAAACTCTTGAAGAGGTTGCAAGATTGGAACAGGCACTAAAGTCAGGTCAGCTACCTGCAGATTTGAATCTTTTGGAAGATAATACTGTGACAAATACCACAAAAGATACAGACGATAAGACAATGTCTGATGGTGGAGATGAAGAAAATGTATCCAAGGATGCAAAAGAACAATCGAATGATGAATCTACACCTATGGAGCAGCTTTCATCGATTGGTGATCCTGTTGGGCTGATTTGTGGACATTTTAAAGAACTTTTGAGAAGTCCAAGCATGTCCCATCTTAGCCTGGGGACGTTAGACCTCTACTTCACCTCTTTTTTAGGAGTTGGTTCTTTTTCTCCCTTCTAG

Protein sequence

MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQLSSIGDPVGLICGHFKELLRSPSMSHLSLGTLDLYFTSFLGVGSFSPF

Homology

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BLAST of CmoCh08G000340.1 vs. ExPASy Swiss-Prot
Match: P43333 (U2 small nuclear ribonucleoprotein A' OS=Arabidopsis thaliana OX=3702 GN=At1g09760 PE=2 SV=2)

HSP 1 Score: 356.3 bits (913), Expect = 3.8e-97
Identity = 190/239 (79.50%), Postives = 209/239 (87.45%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MV+LT DLIWKSPHFFNAIKERELDLRGNKI VIENLGATEDQFD IDLSDNEIVKLEN 
Sbjct: 1   MVKLTADLIWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENF 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           PYLNRLGTLLINNNRITRINPN+GEFLPKLH+LVLTNNRLVNLVEIDPLAS+PKLQ+LSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNLGEFLPKLHSLVLTNNRLVNLVEIDPLASIPKLQYLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKK NYRLYVIHKL+SLRVLDF K++ KER EA +LFSSKE EEE KK S +   
Sbjct: 121 LDNNITKKANYRLYVIHKLKSLRVLDFIKIKAKERAEAASLFSSKEAEEEVKKVSRE--- 180

Query: 181 PGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL 240
             EV+  S+  E  +T  + APT EQI+AIKAAI+NSQT+EE+ARLEQALK GQ+PA L
Sbjct: 181 --EVKKVSETAENPETPKVVAPTAEQILAIKAAIINSQTIEEIARLEQALKFGQVPAGL 234

[Close]

BLAST of CmoCh08G000340.1 vs. ExPASy Swiss-Prot
Match: P09661 (U2 small nuclear ribonucleoprotein A' OS=Homo sapiens OX=9606 GN=SNRPA1 PE=1 SV=2)

HSP 1 Score: 213.4 bits (542), Expect = 3.9e-54
Identity = 132/261 (50.57%), Postives = 170/261 (65.13%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MV+LT +LI ++  + NA+++RELDLRG KI VIENLGAT DQFDAID SDNEI KL+  
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           P L RL TLL+NNNRI RI   + + LP L  L+LTNN LV L ++DPLASL  L +LS+
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query: 121 LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKT 180
           L N +T K +YRLYVI+K+  +RVLDF+KV+ KER EA  +F  K   + AK      KT
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIARRSKT 180

Query: 181 FVPGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPA- 240
           F PG    A  P ++K+      P+P  + AIK AI N+ TL EV RL+  L+SGQ+P  
Sbjct: 181 FNPG----AGLPTDKKK----GGPSPGDVEAIKNAIANASTLAEVERLKGLLQSGQIPGR 240

Query: 241 ---------DLNLLEDNTVTN 250
                        +E++TVTN
Sbjct: 241 ERRSGPTDDGEEEMEEDTVTN 253

[Close]

BLAST of CmoCh08G000340.1 vs. ExPASy Swiss-Prot
Match: Q4R8Y8 (U2 small nuclear ribonucleoprotein A' OS=Macaca fascicularis OX=9541 GN=SNRPA1 PE=2 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 3.9e-54
Identity = 132/261 (50.57%), Postives = 170/261 (65.13%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MV+LT +LI ++  + NA+++RELDLRG KI VIENLGAT DQFDAID SDNEI KL+  
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           P L RL TLL+NNNRI RI   + + LP L  L+LTNN LV L ++DPLASL  L +LS+
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query: 121 LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKT 180
           L N +T K +YRLYVI+K+  +RVLDF+KV+ KER EA  +F  K   + AK      KT
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIARRSKT 180

Query: 181 FVPGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPA- 240
           F PG    A  P ++K+      P+P  + AIK AI N+ TL EV RL+  L+SGQ+P  
Sbjct: 181 FNPG----AGLPTDKKK----GGPSPGDVEAIKNAIANASTLAEVERLKGLLQSGQIPGR 240

Query: 241 ---------DLNLLEDNTVTN 250
                        +E++TVTN
Sbjct: 241 ERRSGPTDDGEEEMEEDTVTN 253

[Close]

BLAST of CmoCh08G000340.1 vs. ExPASy Swiss-Prot
Match: P57784 (U2 small nuclear ribonucleoprotein A' OS=Mus musculus OX=10090 GN=Snrpa1 PE=1 SV=2)

HSP 1 Score: 211.8 bits (538), Expect = 1.1e-53
Identity = 132/261 (50.57%), Postives = 169/261 (64.75%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MV+LT +LI ++  + NA+++RELDLRG KI VIENLGAT DQFDAID SDNEI KL+  
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           P L RL TLL+NNNRI RI   + + LP L  L+LTNN LV L ++DPLASL  L +LS+
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query: 121 LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKT 180
           L N +T K +YRLYVI+K+  +RVLDF+KV+ KER EA  +F  K   + AK      KT
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIARRSKT 180

Query: 181 FVPGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPA- 240
           F PG    A  P ++K+      P+   + AIK AI N+ TL EV RL+  L+SGQ+P  
Sbjct: 181 FNPG----AGLPTDKKK----GGPSAGDVEAIKNAIANASTLAEVERLKGLLQSGQIPGR 240

Query: 241 ---------DLNLLEDNTVTN 250
                        +ED+TVTN
Sbjct: 241 ERRSGPSDEGEEEIEDDTVTN 253

[Close]

BLAST of CmoCh08G000340.1 vs. ExPASy Swiss-Prot
Match: Q9BLB6 (Probable U2 small nuclear ribonucleoprotein A' OS=Caenorhabditis elegans OX=6239 GN=mog-2 PE=1 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 3.3e-45
Identity = 108/238 (45.38%), Postives = 153/238 (64.29%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLT +L  + P F N++  RE++LRG KI VIEN+G T DQFD IDL+DN+I KL+N 
Sbjct: 1   MVRLTTELFAERPQFVNSVNMREINLRGQKIPVIENMGVTRDQFDVIDLTDNDIRKLDNF 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           P  +RL TL ++NNRI  I P+I   LP L TL LTNN +  L +I+PLA   KL++++ 
Sbjct: 61  PTFSRLNTLYLHNNRINYIAPDIATKLPNLKTLALTNNNICELGDIEPLAECKKLEYVTF 120

Query: 121 LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEE--EAKKESVKT 180
           + N IT K NYR+Y+I+KL ++RV+DF +VR  ER  A+ +F  K  ++  +A ++SV T
Sbjct: 121 IGNPITHKDNYRMYMIYKLPTVRVIDFNRVRLTEREAAKKMFKGKSGKKARDAIQKSVHT 180

Query: 181 FVPGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP 237
             P E+E       E  +   +  T E    IK AI N+++L EV  L+  L SG++P
Sbjct: 181 EDPSEIE-----PNENSSGGGARLTDEDREKIKEAIKNAKSLSEVNYLQSILASGKVP 233

[Close]

BLAST of CmoCh08G000340.1 vs. ExPASy TrEMBL
Match: A0A6J1H905 (U2 small nuclear ribonucleoprotein A' OS=Cucurbita moschata OX=3662 GN=LOC111461186 PE=3 SV=1)

HSP 1 Score: 533.1 bits (1372), Expect = 8.3e-148
Identity = 285/285 (100.00%), Postives = 285/285 (100.00%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV
Sbjct: 121 LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180

Query: 181 PGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
           PGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN
Sbjct: 181 PGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240

Query: 241 LLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQ 286
           LLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQ
Sbjct: 241 LLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQ 285

[Close]

BLAST of CmoCh08G000340.1 vs. ExPASy TrEMBL
Match: A0A6J1KWC8 (U2 small nuclear ribonucleoprotein A' OS=Cucurbita maxima OX=3661 GN=LOC111498166 PE=3 SV=1)

HSP 1 Score: 531.6 bits (1368), Expect = 2.4e-147
Identity = 284/285 (99.65%), Postives = 285/285 (100.00%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV
Sbjct: 121 LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180

Query: 181 PGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
           PGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN
Sbjct: 181 PGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240

Query: 241 LLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQ 286
           LLEDNTVTNTTKDTDDKT+SDGGDEENVSKDAKEQSNDESTPMEQ
Sbjct: 241 LLEDNTVTNTTKDTDDKTVSDGGDEENVSKDAKEQSNDESTPMEQ 285

[Close]

BLAST of CmoCh08G000340.1 vs. ExPASy TrEMBL
Match: A0A6J1D6P1 (U2 small nuclear ribonucleoprotein A' OS=Momordica charantia OX=3673 GN=LOC111017441 PE=3 SV=1)

HSP 1 Score: 510.4 bits (1313), Expect = 5.8e-141
Identity = 272/285 (95.44%), Postives = 278/285 (97.54%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKKPNYRLYVIHKL+SLRVLDFKKVRNKERLEAR+LFSSKEVEEEAK ESVKTFV
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARSLFSSKEVEEEAKNESVKTFV 180

Query: 181 PGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
           PGEVENASKP EEKQTS +SAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN
Sbjct: 181 PGEVENASKPAEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240

Query: 241 LLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQ 286
           LLEDNTV+NTTKDTDD+TMSDG DE+NVSKD KEQ NDES PMEQ
Sbjct: 241 LLEDNTVSNTTKDTDDETMSDGRDEDNVSKDVKEQPNDESAPMEQ 285

[Close]

BLAST of CmoCh08G000340.1 vs. ExPASy TrEMBL
Match: E5GB46 (U2 small nuclear ribonucleoprotein a OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 477.6 bits (1228), Expect = 4.1e-131
Identity = 260/285 (91.23%), Postives = 265/285 (92.98%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRLVNLVEIDPLASL KLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKKPNYRLYVIHKL+S+RVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180

Query: 181 PGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
            GEVE ASKPVEEKQT  +SAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN
Sbjct: 181 SGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240

Query: 241 LLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQ 286
           LLEDNT  N TKD DDKT S  GDEE+V       +NDESTPMEQ
Sbjct: 241 LLEDNTAPNITKDKDDKTTSGSGDEEHV-------TNDESTPMEQ 278

[Close]

BLAST of CmoCh08G000340.1 vs. ExPASy TrEMBL
Match: A0A1S3CAU7 (U2 small nuclear ribonucleoprotein A' OS=Cucumis melo OX=3656 GN=LOC103498903 PE=3 SV=1)

HSP 1 Score: 477.6 bits (1228), Expect = 4.1e-131
Identity = 260/285 (91.23%), Postives = 265/285 (92.98%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRLVNLVEIDPLASL KLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKKPNYRLYVIHKL+S+RVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180

Query: 181 PGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
            GEVE ASKPVEEKQT  +SAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN
Sbjct: 181 SGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240

Query: 241 LLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQ 286
           LLEDNT  N TKD DDKT S  GDEE+V       +NDESTPMEQ
Sbjct: 241 LLEDNTAPNITKDKDDKTTSGSGDEEHV-------TNDESTPMEQ 278

[Close]

BLAST of CmoCh08G000340.1 vs. NCBI nr
Match: XP_022960458.1 (U2 small nuclear ribonucleoprotein A' [Cucurbita moschata] >XP_023514252.1 U2 small nuclear ribonucleoprotein A' [Cucurbita pepo subsp. pepo] >KAG6592834.1 U2 small nuclear ribonucleoprotein A', partial [Cucurbita argyrosperma subsp. sororia] >KAG7025241.1 U2 small nuclear ribonucleoprotein A', partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 533.1 bits (1372), Expect = 1.7e-147
Identity = 285/285 (100.00%), Postives = 285/285 (100.00%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV
Sbjct: 121 LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180

Query: 181 PGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
           PGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN
Sbjct: 181 PGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240

Query: 241 LLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQ 286
           LLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQ
Sbjct: 241 LLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQ 285

[Close]

BLAST of CmoCh08G000340.1 vs. NCBI nr
Match: XP_023005060.1 (U2 small nuclear ribonucleoprotein A' [Cucurbita maxima])

HSP 1 Score: 531.6 bits (1368), Expect = 5.0e-147
Identity = 284/285 (99.65%), Postives = 285/285 (100.00%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV
Sbjct: 121 LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180

Query: 181 PGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
           PGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN
Sbjct: 181 PGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240

Query: 241 LLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQ 286
           LLEDNTVTNTTKDTDDKT+SDGGDEENVSKDAKEQSNDESTPMEQ
Sbjct: 241 LLEDNTVTNTTKDTDDKTVSDGGDEENVSKDAKEQSNDESTPMEQ 285

[Close]

BLAST of CmoCh08G000340.1 vs. NCBI nr
Match: XP_038907085.1 (U2 small nuclear ribonucleoprotein A' [Benincasa hispida])

HSP 1 Score: 510.8 bits (1314), Expect = 9.1e-141
Identity = 273/285 (95.79%), Postives = 278/285 (97.54%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKKPNYRLYVIHKL+S+RVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVK FV
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKMFV 180

Query: 181 PGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
           PGEVENASKPVEEKQTS +SAPT EQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN
Sbjct: 181 PGEVENASKPVEEKQTSNVSAPTAEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240

Query: 241 LLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQ 286
           LL+DNTV NTTK+TDDKTMSD GDEENVSKD KEQSNDE TPMEQ
Sbjct: 241 LLDDNTVPNTTKNTDDKTMSDSGDEENVSKDVKEQSNDEPTPMEQ 285

[Close]

BLAST of CmoCh08G000340.1 vs. NCBI nr
Match: XP_022148876.1 (U2 small nuclear ribonucleoprotein A' [Momordica charantia])

HSP 1 Score: 510.4 bits (1313), Expect = 1.2e-140
Identity = 272/285 (95.44%), Postives = 278/285 (97.54%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKKPNYRLYVIHKL+SLRVLDFKKVRNKERLEAR+LFSSKEVEEEAK ESVKTFV
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARSLFSSKEVEEEAKNESVKTFV 180

Query: 181 PGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
           PGEVENASKP EEKQTS +SAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN
Sbjct: 181 PGEVENASKPAEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240

Query: 241 LLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQ 286
           LLEDNTV+NTTKDTDD+TMSDG DE+NVSKD KEQ NDES PMEQ
Sbjct: 241 LLEDNTVSNTTKDTDDETMSDGRDEDNVSKDVKEQPNDESAPMEQ 285

[Close]

BLAST of CmoCh08G000340.1 vs. NCBI nr
Match: XP_004140564.3 (U2 small nuclear ribonucleoprotein A' [Cucumis sativus] >KAE8646748.1 hypothetical protein Csa_005755 [Cucumis sativus])

HSP 1 Score: 485.7 bits (1249), Expect = 3.1e-133
Identity = 263/285 (92.28%), Postives = 268/285 (94.04%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRLVNLVEIDPLASL KLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKKPNYRLYVIHKL+S+RVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180

Query: 181 PGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
           PGEVE ASKPVEEKQT  +SAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN
Sbjct: 181 PGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240

Query: 241 LLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQ 286
           LLEDNT  N TKD DDKTMSD GDEE+V       +NDESTPMEQ
Sbjct: 241 LLEDNTAQNITKDKDDKTMSDSGDEEHV-------TNDESTPMEQ 278

[Close]

BLAST of CmoCh08G000340.1 vs. TAIR 10
Match: AT1G09760.1 (U2 small nuclear ribonucleoprotein A )

HSP 1 Score: 356.3 bits (913), Expect = 2.7e-98
Identity = 190/239 (79.50%), Postives = 209/239 (87.45%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MV+LT DLIWKSPHFFNAIKERELDLRGNKI VIENLGATEDQFD IDLSDNEIVKLEN 
Sbjct: 1   MVKLTADLIWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENF 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           PYLNRLGTLLINNNRITRINPN+GEFLPKLH+LVLTNNRLVNLVEIDPLAS+PKLQ+LSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNLGEFLPKLHSLVLTNNRLVNLVEIDPLASIPKLQYLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKK NYRLYVIHKL+SLRVLDF K++ KER EA +LFSSKE EEE KK S +   
Sbjct: 121 LDNNITKKANYRLYVIHKLKSLRVLDFIKIKAKERAEAASLFSSKEAEEEVKKVSRE--- 180

Query: 181 PGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL 240
             EV+  S+  E  +T  + APT EQI+AIKAAI+NSQT+EE+ARLEQALK GQ+PA L
Sbjct: 181 --EVKKVSETAENPETPKVVAPTAEQILAIKAAIINSQTIEEIARLEQALKFGQVPAGL 234

[Close]

BLAST of CmoCh08G000340.1 vs. TAIR 10
Match: AT1G04210.1 (Leucine-rich repeat protein kinase family protein )

HSP 1 Score: 42.4 bits (98), Expect = 8.6e-04
Identity = 33/86 (38.37%), Postives = 51/86 (59.30%), Query Frame = 0


Query: 47  IDLSDNEIVKLEN-MPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVE 106
           +DLS N+I  L N + YL+ L  L + +NR+  ++P +   L  L +L ++NNRL  L  
Sbjct: 181 LDLSFNKIKSLPNEIGYLSSLTFLKVAHNRLMELSPVLA-LLQNLESLDVSNNRLTTLHP 240

Query: 107 IDPLASLPKLQFLSLLDNNITKKPNY 132
           +D L  +P+LQ L+L  N   K P+Y
Sbjct: 241 LD-LNLMPRLQILNLRYN---KLPSY 261

The following BLAST results are available for this feature:

BLAST of CmoCh08G000340.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P43333	3.8e-97	79.50	U2 small nuclear ribonucleoprotein A' OS=Arabidopsis thaliana OX=3702 GN=At1g097...	[more]
P09661	3.9e-54	50.57	U2 small nuclear ribonucleoprotein A' OS=Homo sapiens OX=9606 GN=SNRPA1 PE=1 SV=...	[more]
Q4R8Y8	3.9e-54	50.57	U2 small nuclear ribonucleoprotein A' OS=Macaca fascicularis OX=9541 GN=SNRPA1 P...	[more]
P57784	1.1e-53	50.57	U2 small nuclear ribonucleoprotein A' OS=Mus musculus OX=10090 GN=Snrpa1 PE=1 SV...	[more]
Q9BLB6	3.3e-45	45.38	Probable U2 small nuclear ribonucleoprotein A' OS=Caenorhabditis elegans OX=6239...	[more]

BLAST of CmoCh08G000340.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H905	8.3e-148	100.00	U2 small nuclear ribonucleoprotein A' OS=Cucurbita moschata OX=3662 GN=LOC111461...	[more]
A0A6J1KWC8	2.4e-147	99.65	U2 small nuclear ribonucleoprotein A' OS=Cucurbita maxima OX=3661 GN=LOC11149816...	[more]
A0A6J1D6P1	5.8e-141	95.44	U2 small nuclear ribonucleoprotein A' OS=Momordica charantia OX=3673 GN=LOC11101...	[more]
E5GB46	4.1e-131	91.23	U2 small nuclear ribonucleoprotein a OS=Cucumis melo subsp. melo OX=412675 PE=3 ...	[more]
A0A1S3CAU7	4.1e-131	91.23	U2 small nuclear ribonucleoprotein A' OS=Cucumis melo OX=3656 GN=LOC103498903 PE...	[more]

BLAST of CmoCh08G000340.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022960458.1	1.7e-147	100.00	U2 small nuclear ribonucleoprotein A' [Cucurbita moschata] >XP_023514252.1 U2 sm...	[more]
XP_023005060.1	5.0e-147	99.65	U2 small nuclear ribonucleoprotein A' [Cucurbita maxima]	[more]
XP_038907085.1	9.1e-141	95.79	U2 small nuclear ribonucleoprotein A' [Benincasa hispida]	[more]
XP_022148876.1	1.2e-140	95.44	U2 small nuclear ribonucleoprotein A' [Momordica charantia]	[more]
XP_004140564.3	3.1e-133	92.28	U2 small nuclear ribonucleoprotein A' [Cucumis sativus] >KAE8646748.1 hypothetic...	[more]

BLAST of CmoCh08G000340.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09760.1	2.7e-98	79.50	U2 small nuclear ribonucleoprotein A	[more]
AT1G04210.1	8.6e-04	38.37	Leucine-rich repeat protein kinase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003603	U2A'/phosphoprotein 32 family A, C-terminal	SMART	SM00446	LRRcap_2	coord: 128..146 e-value: 0.0075 score: 25.5
None	No IPR available	PFAM	PF14580	LRR_9	coord: 1..173 e-value: 3.7E-80 score: 267.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 249..278
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 241..288
None	No IPR available	PANTHER	PTHR10552:SF8	BNAC08G13840D PROTEIN	coord: 1..243
None	No IPR available	SUPERFAMILY	52058	L domain-like	coord: 13..158
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 1..176 e-value: 1.2E-48 score: 166.5
IPR044640	U2 small nuclear ribonucleoprotein A'	PANTHER	PTHR10552	U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A	coord: 1..243
IPR001611	Leucine-rich repeat	PROSITE	PS51450	LRR	coord: 89..110 score: 7.049695

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh08G000340	CmoCh08G000340	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh08G000340.1:exon:5023	CmoCh08G000340.1:exon:5023	exon
CmoCh08G000340.1:exon:5022	CmoCh08G000340.1:exon:5022	exon
CmoCh08G000340.1:exon:5021	CmoCh08G000340.1:exon:5021	exon
CmoCh08G000340.1:exon:5020	CmoCh08G000340.1:exon:5020	exon
CmoCh08G000340.1:exon:5019	CmoCh08G000340.1:exon:5019	exon
CmoCh08G000340.1:exon:5018	CmoCh08G000340.1:exon:5018	exon
CmoCh08G000340.1:exon:5017	CmoCh08G000340.1:exon:5017	exon
CmoCh08G000340.1:exon:5016	CmoCh08G000340.1:exon:5016	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh08G000340.1:cds	CmoCh08G000340.1:cds_8	CDS
CmoCh08G000340.1:cds	CmoCh08G000340.1:cds_7	CDS
CmoCh08G000340.1:cds	CmoCh08G000340.1:cds_6	CDS
CmoCh08G000340.1:cds	CmoCh08G000340.1:cds_5	CDS
CmoCh08G000340.1:cds	CmoCh08G000340.1:cds_4	CDS
CmoCh08G000340.1:cds	CmoCh08G000340.1:cds_3	CDS
CmoCh08G000340.1:cds	CmoCh08G000340.1:cds_2	CDS
CmoCh08G000340.1:cds	CmoCh08G000340.1:cds	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh08G000340.1:five_prime_utr	CmoCh08G000340.1:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh08G000340.1	CmoCh08G000340.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0015030	Cajal body
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0005515	protein binding
molecular_function	GO:0030620	U2 snRNA binding