CmoCh08G000310.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh08G000310.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Plant protein of unknown function (DUF247)
Location	Cmo_Chr08: 159010 .. 160578 (+)
Sequence length	579
RNA-Seq Expression	CmoCh08G000310.1
Synteny	CmoCh08G000310.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACACAGGAGCTGATTTGCAATTGGTTGGGCATCTCCCAGAAAGATCTGCTCGATGAATTCTTGCACATTTTGGACTTGTATAAGGCCTCATTATTGTGTCCTCCGATAGACCGGACGAAGTGGTGTGAGGAGGGGAAGTGGAAGGAGAAGTGGAAGGAGGAGGAGAAGGGGGAGCTTTCAGGCGCGGAGTTTCAAGTCATTCCGCCCGCAACAAAGCTTCATGAAGCGGGGATCAAATTCAAGATGAGCCAGACGAAGAGCCTTAAGGACGTGATTTTCGATGAAGTAGAAGGCGTGTTGAGTCTGCCGATGTTGATGGTGGACGACAACACTGAGTCCACTTTCTTAAACGTGATGGCATTTGAGAAACTCCACGTTGAGGGTGCAGCCCAAGAAGCGCCTTCCCTCATCACGTCTTTCGTGATCTTGATGAGTAATTTGATAGACGACGAGAGAGATGTGGCGCTGCTATCCTCCAAGGGTACGTTGGCAAATGCGCTTGGGAATGACAGAGAAGCGGCAGAGTTGTTCAGTCGGCTGGGGAAAGGGGTGGCTATGGGTCCCAACAGGCACATGATGGCGGTGCACAAGATGCTGAATGACTACTGCAAGGAGCCCTGGAATGAACGGTGCGCAACTCTGAAGCACCAATACTTTCAAAACCCATGGACCGTCATCTCCTTAACCGCTGCTATTTTTGGTTTCCTCATCCTAATCCTCCAGGCCATCTACCAACTTCTTGATTACTACAAGAAGGACAAAAAGAAATAATACAAGGAGGACAAAAAGAAATAATACTAACTTCGTCCACACCACCTACCACTTTCGCATTTCTTGATTACTCCTTTGTATTTTCGATAATGTTTTTATGTGGGTTTGACTTATAAAAATAATTATAATATCTGACTTTGTATTTTCGATAATGTTTTTATGTGAGTTTGACTTATAAAAATAAACCTTACAAAGAGTTTAAAGCAAGGTTAGTATTTAAGGGATACAATCTAACTTATGGTCTACACCTTTTATAAGCAATGTCAAGAAGTTCACACTCTTTTATAAGCAATTTGTGGGTACAAAGAAGCCAATTTTGGCAAGAAGGGAGGCGGCGGCGACTTGATTTTTGCAAATTATAGTTTAATACTAAATATCCTTAGTCCATTTATTTCCATCGTTTTGAAGAAGAGTGTTTGGATTAAGCAAAATTGTTCCCACTACAAAGTTGTTGCTTTGCTAGAACCAGCACTAGAGGTCGATATGAGTGAGTTTATATTACACTCATCATATTCATTACCCCTTGATGCAAGTTTTATTGATGGAACCAAAAGTAAAACCAAAGATTAATGCGGCTGTTGTTAAGTTTATGCATATATATCCATGAGGGTTGGGGAATGAAGGTGCAAGCAATGGAGAGACAGCCATCGGTGCCCATCAGCATCAGCCTCGTTAGAGATGAGAATGAGTTGGTTATTAAGGTGAAGGACAGTCTGCATCAACTAGTGTTGAATTCTCCTGCCTTGGTCGACATGGAATCAGGGCGAAGCGGAAAACGATACCATTCTTCATGA

mRNA sequence

ATGCACACAGGAGCTGATTTGCAATTGAAAGATCTGCTCGATGAATTCTTGCACATTTTGGACTTGTATAAGGCCTCATTATTGTGTCCTCCGATAGACCGGACGAAGTGGTGTGAGGAGGGGAAGTGGAAGGAGAAGTGGAAGGAGGAGGAGAAGGGGGAGCTTTCAGGCGCGGAGTTTCAAGTCATTCCGCCCGCAACAAAGCTTCATGAAGCGGGGATCAAATTCAAGATGAGCCAGACGAAGAGCCTTAAGGACGTGATTTTCGATGAAGTAGAAGGCGTGTTGAGTCTGCCGATGTTGATGGTGGACGACAACACTGAGTCCACTTTCTTAAACGTGATGGCATTTGAGAAACTCCACGTTGAGGGTGCAGCCCAAGAAGCGCCTTCCCTCATCACGTCTTTCGTGCAAGCAATGGAGAGACAGCCATCGGTGCCCATCAGCATCAGCCTCGTTAGAGATGAGAATGAGTTGGTTATTAAGGTGAAGGACAGTCTGCATCAACTAGTGTTGAATTCTCCTGCCTTGGTCGACATGGAATCAGGGCGAAGCGGAAAACGATACCATTCTTCATGA

Coding sequence (CDS)

ATGCACACAGGAGCTGATTTGCAATTGAAAGATCTGCTCGATGAATTCTTGCACATTTTGGACTTGTATAAGGCCTCATTATTGTGTCCTCCGATAGACCGGACGAAGTGGTGTGAGGAGGGGAAGTGGAAGGAGAAGTGGAAGGAGGAGGAGAAGGGGGAGCTTTCAGGCGCGGAGTTTCAAGTCATTCCGCCCGCAACAAAGCTTCATGAAGCGGGGATCAAATTCAAGATGAGCCAGACGAAGAGCCTTAAGGACGTGATTTTCGATGAAGTAGAAGGCGTGTTGAGTCTGCCGATGTTGATGGTGGACGACAACACTGAGTCCACTTTCTTAAACGTGATGGCATTTGAGAAACTCCACGTTGAGGGTGCAGCCCAAGAAGCGCCTTCCCTCATCACGTCTTTCGTGCAAGCAATGGAGAGACAGCCATCGGTGCCCATCAGCATCAGCCTCGTTAGAGATGAGAATGAGTTGGTTATTAAGGTGAAGGACAGTCTGCATCAACTAGTGTTGAATTCTCCTGCCTTGGTCGACATGGAATCAGGGCGAAGCGGAAAACGATACCATTCTTCATGA

Protein sequence

MHTGADLQLKDLLDEFLHILDLYKASLLCPPIDRTKWCEEGKWKEKWKEEEKGELSGAEFQVIPPATKLHEAGIKFKMSQTKSLKDVIFDEVEGVLSLPMLMVDDNTESTFLNVMAFEKLHVEGAAQEAPSLITSFVQAMERQPSVPISISLVRDENELVIKVKDSLHQLVLNSPALVDMESGRSGKRYHSS

Homology

[Close]

BLAST of CmoCh08G000310.1 vs. ExPASy Swiss-Prot
Match: P0C897 (Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana OX=3702 GN=At3g02645 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.1e-05
Identity = 29/102 (28.43%), Postives = 54/102 (52.94%), Query Frame = 0


Query: 63  IPPATKLHEAGIKFKMSQTKSLKDVIFDEVEGVLSLPMLMVDDNTESTFLNVMAFEKLHV 122
           IP  + LH+AG++FK +   ++  V FD   G   LP++ +D NTE+   N++A+E  + 
Sbjct: 345 IPSVSDLHKAGVRFKPTAHGNISTVTFDSNSGQFYLPVINLDINTETVLRNLVAYEATNT 404

Query: 123 EGAAQEAPSLITSFVQAMERQPSVPISISLVRDENELVIKVK 165
            G     P + T + + +         + L+R++  LV ++K
Sbjct: 405 SG-----PLVFTRYTELINGIIDSEEDVRLLREQGVLVSRLK 441

[Close]

BLAST of CmoCh08G000310.1 vs. ExPASy TrEMBL
Match: A0A6J1H6V9 (UPF0481 protein At3g47200-like OS=Cucurbita moschata OX=3662 GN=LOC111461034 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 6.2e-55
Identity = 120/152 (78.95%), Postives = 125/152 (82.24%), Query Frame = 0


Query: 10  KDLLDEFLHILDLYKASLLCPPIDRTKWCEEGKWKEKWKEEEKGELSGAEFQVIPPATKL 69
           KDLLDEFLHILDLYKASLLCPPIDRTKWC            EKGELSGAEFQVIPPATKL
Sbjct: 222 KDLLDEFLHILDLYKASLLCPPIDRTKWC------------EKGELSGAEFQVIPPATKL 281

Query: 70  HEAGIKFKMSQTKSLKDVIFDEVEGVLSLPMLMVDDNTESTFLNVMAFEKLHVEGAAQEA 129
           HEAGIKFKMSQTKSLKDVIFDEVEGVLSLPMLMVDDNTESTFLNVMAFEKLHVEGAAQEA
Sbjct: 282 HEAGIKFKMSQTKSLKDVIFDEVEGVLSLPMLMVDDNTESTFLNVMAFEKLHVEGAAQEA 341

Query: 130 PSLITSFVQAMERQPSVPISISLVRDENELVI 162
           PSLITSFV  M          +L+ DE ++ +
Sbjct: 342 PSLITSFVILMS---------NLIDDERDVAL 352

[Close]

BLAST of CmoCh08G000310.1 vs. ExPASy TrEMBL
Match: A0A6J1KYV8 (UPF0481 protein At3g47200-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111497633 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.0e-25
Identity = 75/151 (49.67%), Postives = 95/151 (62.91%), Query Frame = 0


Query: 11  DLLDEFLHILDLYKASLLCPPIDRTKWCEEGKWKEKWKEEEKGELSGAEFQVIPPATKLH 70
           +++ + LHIL++YK SLL PPIDR  W  E             + S  E QVIPPATKLH
Sbjct: 217 EVMKDCLHILEMYKESLLYPPIDRRDWSAE------------LDHSDPECQVIPPATKLH 276

Query: 71  EAGIKFKMSQTKSLKDVIFDEVEGVLSLPMLMVDDNTESTFLNVMAFEKLHVEGAAQEAP 130
           EAGIKFK S+T+SL+DV FD   GVL LP LMVDD+TEST LNVMAFEKLH++   +   
Sbjct: 277 EAGIKFKRSKTESLRDVWFDTKRGVLWLPQLMVDDDTESTMLNVMAFEKLHMKAGRK--- 336

Query: 131 SLITSFVQAMERQPSVPISISLVRDENELVI 162
             +TSFV  M          +L+ DE ++ +
Sbjct: 337 --VTSFVILMS---------NLIDDERDVAV 341

[Close]

BLAST of CmoCh08G000310.1 vs. ExPASy TrEMBL
Match: A0A6J1KVQ6 (UPF0481 protein At3g47200-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111497633 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.0e-25
Identity = 75/151 (49.67%), Postives = 95/151 (62.91%), Query Frame = 0


Query: 11  DLLDEFLHILDLYKASLLCPPIDRTKWCEEGKWKEKWKEEEKGELSGAEFQVIPPATKLH 70
           +++ + LHIL++YK SLL PPIDR  W  E             + S  E QVIPPATKLH
Sbjct: 216 EVMKDCLHILEMYKESLLYPPIDRRDWSAE------------LDHSDPECQVIPPATKLH 275

Query: 71  EAGIKFKMSQTKSLKDVIFDEVEGVLSLPMLMVDDNTESTFLNVMAFEKLHVEGAAQEAP 130
           EAGIKFK S+T+SL+DV FD   GVL LP LMVDD+TEST LNVMAFEKLH++   +   
Sbjct: 276 EAGIKFKRSKTESLRDVWFDTKRGVLWLPQLMVDDDTESTMLNVMAFEKLHMKAGRK--- 335

Query: 131 SLITSFVQAMERQPSVPISISLVRDENELVI 162
             +TSFV  M          +L+ DE ++ +
Sbjct: 336 --VTSFVILMS---------NLIDDERDVAV 340

[Close]

BLAST of CmoCh08G000310.1 vs. ExPASy TrEMBL
Match: A0A6J1HB25 (UPF0481 protein At3g47200-like OS=Cucurbita moschata OX=3662 GN=LOC111461183 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.1e-24
Identity = 77/151 (50.99%), Postives = 93/151 (61.59%), Query Frame = 0


Query: 11  DLLDEFLHILDLYKASLLCPPIDRTKWCEEGKWKEKWKEEEKGELSGAEFQVIPPATKLH 70
           +++ + LHIL++YK SLL PPIDRT W             E G  S  E QVIPPATKL 
Sbjct: 217 EVMKDCLHILEMYKESLLHPPIDRTDW-----------SVELGH-SDPECQVIPPATKLR 276

Query: 71  EAGIKFKMSQTKSLKDVIFDEVEGVLSLPMLMVDDNTESTFLNVMAFEKLHVEGAAQEAP 130
           EAGIKFK S+T SL DV FD   GVL LP LMVDDNTEST LNVMAFEKLH++   +   
Sbjct: 277 EAGIKFKRSKTGSLTDVFFDAKGGVLWLPRLMVDDNTESTLLNVMAFEKLHMKAGRK--- 336

Query: 131 SLITSFVQAMERQPSVPISISLVRDENELVI 162
             +TSFV  M          +L+ DE ++ +
Sbjct: 337 --VTSFVILMS---------NLIDDERDVAV 341

[Close]

BLAST of CmoCh08G000310.1 vs. ExPASy TrEMBL
Match: A0A6J1D5C0 (UPF0481 protein At3g47200-like OS=Momordica charantia OX=3673 GN=LOC111017450 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 9.1e-22
Identity = 71/147 (48.30%), Postives = 98/147 (66.67%), Query Frame = 0


Query: 15  EFLHILDLYKASLLCPPIDRTKWCEEGKWKEKWKEEEKGELSGAEFQVIPPATKLHEAGI 74
           E+LHIL++Y  +LL P     K   +G+ K + KE  K EL  +E Q+I PAT+LHEAGI
Sbjct: 216 EYLHILEMYMDTLLLP-----KVVSQGRQKGRSKEAAK-ELD-SEIQIIWPATRLHEAGI 275

Query: 75  KFKMSQTKSLKDVIFDEVEGVLSLPMLMVDDNTESTFLNVMAFEKLHVEGAAQEAPSLIT 134
           +F+ SQ+KS+ DV FDE  GVL LP ++VDD+TESTFLNVMAFEKLH     +EA S +T
Sbjct: 276 RFRRSQSKSITDVWFDEKRGVLKLPKMVVDDDTESTFLNVMAFEKLH-----KEAGSKVT 335

Query: 135 SFVQAMERQPSVPISISLVRDENELVI 162
            F+  M     V   ++L+   N++++
Sbjct: 336 CFILLMNNLIDVDQDVALLA-SNKIIL 349

[Close]

BLAST of CmoCh08G000310.1 vs. NCBI nr
Match: KAG6592830.1 (UPF0481 protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 234.6 bits (597), Expect = 7.3e-58
Identity = 127/156 (81.41%), Postives = 133/156 (85.26%), Query Frame = 0


Query: 10  KDLLDEFLHILDLYKASLLCPPIDRTKWCEE----GKWKEKWKEEEKGELSGAEFQVIPP 69
           KDLLDEFLHILD+YKASLL PPIDRTKWCEE    GK KEK KEEEK ELSGAEFQVIPP
Sbjct: 222 KDLLDEFLHILDMYKASLLYPPIDRTKWCEEGKGKGKGKEKGKEEEKEELSGAEFQVIPP 281

Query: 70  ATKLHEAGIKFKMSQTKSLKDVIFDEVEGVLSLPMLMVDDNTESTFLNVMAFEKLHVEGA 129
           ATKLHEAGIKFKMSQTKSLKDVIFDEVEGVLSLPMLMVDDNTESTFLNVMAFEKLHVEGA
Sbjct: 282 ATKLHEAGIKFKMSQTKSLKDVIFDEVEGVLSLPMLMVDDNTESTFLNVMAFEKLHVEGA 341

Query: 130 AQEAPSLITSFVQAMERQPSVPISISLVRDENELVI 162
           AQEAPSLITSFV  M          +L+ DE ++ +
Sbjct: 342 AQEAPSLITSFVILMS---------NLIDDERDVAL 368

[Close]

BLAST of CmoCh08G000310.1 vs. NCBI nr
Match: KAG7025238.1 (UPF0481 protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 230.3 bits (586), Expect = 1.4e-56
Identity = 123/152 (80.92%), Postives = 130/152 (85.53%), Query Frame = 0


Query: 10  KDLLDEFLHILDLYKASLLCPPIDRTKWCEEGKWKEKWKEEEKGELSGAEFQVIPPATKL 69
           K LLDEFLHILD+YKASLLCPPIDRTKWCEEG  K K KE+EK ELSGAEFQVIPPATKL
Sbjct: 177 KHLLDEFLHILDMYKASLLCPPIDRTKWCEEG--KGKGKEKEKEELSGAEFQVIPPATKL 236

Query: 70  HEAGIKFKMSQTKSLKDVIFDEVEGVLSLPMLMVDDNTESTFLNVMAFEKLHVEGAAQEA 129
           HE GIKFKMSQTKSLKDVIFDEVEGVLSLPMLMVDDNTESTFLNVMAFEKLHVEGAAQEA
Sbjct: 237 HEVGIKFKMSQTKSLKDVIFDEVEGVLSLPMLMVDDNTESTFLNVMAFEKLHVEGAAQEA 296

Query: 130 PSLITSFVQAMERQPSVPISISLVRDENELVI 162
           PSLITSFV  M          +L+ DE ++ +
Sbjct: 297 PSLITSFVILMS---------NLIDDERDVAL 317

[Close]

BLAST of CmoCh08G000310.1 vs. NCBI nr
Match: XP_022960231.1 (UPF0481 protein At3g47200-like [Cucurbita moschata] >XP_022960232.1 UPF0481 protein At3g47200-like [Cucurbita moschata])

HSP 1 Score: 223.8 bits (569), Expect = 1.3e-54
Identity = 120/152 (78.95%), Postives = 125/152 (82.24%), Query Frame = 0


Query: 10  KDLLDEFLHILDLYKASLLCPPIDRTKWCEEGKWKEKWKEEEKGELSGAEFQVIPPATKL 69
           KDLLDEFLHILDLYKASLLCPPIDRTKWC            EKGELSGAEFQVIPPATKL
Sbjct: 222 KDLLDEFLHILDLYKASLLCPPIDRTKWC------------EKGELSGAEFQVIPPATKL 281

Query: 70  HEAGIKFKMSQTKSLKDVIFDEVEGVLSLPMLMVDDNTESTFLNVMAFEKLHVEGAAQEA 129
           HEAGIKFKMSQTKSLKDVIFDEVEGVLSLPMLMVDDNTESTFLNVMAFEKLHVEGAAQEA
Sbjct: 282 HEAGIKFKMSQTKSLKDVIFDEVEGVLSLPMLMVDDNTESTFLNVMAFEKLHVEGAAQEA 341

Query: 130 PSLITSFVQAMERQPSVPISISLVRDENELVI 162
           PSLITSFV  M          +L+ DE ++ +
Sbjct: 342 PSLITSFVILMS---------NLIDDERDVAL 352

[Close]

BLAST of CmoCh08G000310.1 vs. NCBI nr
Match: XP_023513985.1 (UPF0481 protein At3g47200-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 186.8 bits (473), Expect = 1.7e-43
Identity = 101/151 (66.89%), Postives = 116/151 (76.82%), Query Frame = 0


Query: 11  DLLDEFLHILDLYKASLLCPPIDRTKWCEEGKWKEKWKEEEKGELSGAEFQVIPPATKLH 70
           DL +EFLHILD+YKASLL PP+DRT WC            EK +LSGAE QVIPPATKL 
Sbjct: 222 DLDEEFLHILDMYKASLLSPPVDRTPWC------------EKDKLSGAECQVIPPATKLR 281

Query: 71  EAGIKFKMSQTKSLKDVIFDEVEGVLSLPMLMVDDNTESTFLNVMAFEKLHVEGAAQEAP 130
           EAGI+FK S+TKSLKDVIFD+ +GVLSLPMLMVDD+TESTFLNVMAFEKLHVEGAAQEAP
Sbjct: 282 EAGIRFKRSRTKSLKDVIFDKEQGVLSLPMLMVDDDTESTFLNVMAFEKLHVEGAAQEAP 341

Query: 131 SLITSFVQAMERQPSVPISISLVRDENELVI 162
           SL+TSFV  M          +L+ DE ++ +
Sbjct: 342 SLVTSFVILMS---------NLIDDERDVAL 351

[Close]

BLAST of CmoCh08G000310.1 vs. NCBI nr
Match: XP_023004238.1 (UPF0481 protein At3g47200-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 126.7 bits (317), Expect = 2.1e-25
Identity = 75/151 (49.67%), Postives = 95/151 (62.91%), Query Frame = 0


Query: 11  DLLDEFLHILDLYKASLLCPPIDRTKWCEEGKWKEKWKEEEKGELSGAEFQVIPPATKLH 70
           +++ + LHIL++YK SLL PPIDR  W  E             + S  E QVIPPATKLH
Sbjct: 217 EVMKDCLHILEMYKESLLYPPIDRRDWSAE------------LDHSDPECQVIPPATKLH 276

Query: 71  EAGIKFKMSQTKSLKDVIFDEVEGVLSLPMLMVDDNTESTFLNVMAFEKLHVEGAAQEAP 130
           EAGIKFK S+T+SL+DV FD   GVL LP LMVDD+TEST LNVMAFEKLH++   +   
Sbjct: 277 EAGIKFKRSKTESLRDVWFDTKRGVLWLPQLMVDDDTESTMLNVMAFEKLHMKAGRK--- 336

Query: 131 SLITSFVQAMERQPSVPISISLVRDENELVI 162
             +TSFV  M          +L+ DE ++ +
Sbjct: 337 --VTSFVILMS---------NLIDDERDVAV 341

[Close]

BLAST of CmoCh08G000310.1 vs. TAIR 10
Match: AT3G50180.1 (Plant protein of unknown function (DUF247) )

HSP 1 Score: 62.4 bits (150), Expect = 4.6e-10
Identity = 45/135 (33.33%), Postives = 67/135 (49.63%), Query Frame = 0


Query: 17  LHILDLYKASLLCPPIDRTKWCEEGKWKEKWKEEEKGELSGAEFQVIPPATKLHEAGIKF 76
           LH LD++  SLL P             K  +       L     +VIP  T+L +AG KF
Sbjct: 370 LHCLDVFHRSLLFP---------RSSGKANYSRVADKHLQ----RVIPTVTELRDAGFKF 429

Query: 77  KMSQTKSLKDVIFDEVEGVLSLPMLMVDDNTESTFLNVMAFEKLHVEGAAQEAPSLITSF 136
           K+++T    D+ F    G L +P L++ D T+S FLN++AFE+ H+E +       ITS+
Sbjct: 430 KLNKTDRFWDIKFS--NGYLEIPGLLIHDGTKSLFLNLIAFEQCHIESSND-----ITSY 484

Query: 137 VQAMERQPSVPISIS 152
           +  M+     P  IS
Sbjct: 490 IIFMDNLIDSPEDIS 484

[Close]

BLAST of CmoCh08G000310.1 vs. TAIR 10
Match: AT3G50140.1 (Plant protein of unknown function (DUF247) )

HSP 1 Score: 61.6 bits (148), Expect = 7.9e-10
Identity = 41/133 (30.83%), Postives = 68/133 (51.13%), Query Frame = 0


Query: 9   LKDLLDEFLHILDLYKASLLCPPIDRTKWCEEGKWKEKWKEEEKGELSGAEFQVIPPATK 68
           + D   E LH LD+++ SLL P +         +W  K    +K      + Q++   T+
Sbjct: 309 IADKEKEELHCLDVFRRSLLQPSLKPDPRLSRSRWSRKPLVADK-----RQQQLLHCVTE 368

Query: 69  LHEAGIKFKMSQTKSLKDVIFDEVEGVLSLPMLMVDDNTESTFLNVMAFEKLHVEGAAQE 128
           L EAGIKFK  ++    D+ F    G L +P L++ D T+S F N++A+E+ H++     
Sbjct: 369 LREAGIKFKRRKSDRFWDIQFK--NGCLEIPKLLIHDGTKSLFSNLIAYEQCHIDSTND- 428

Query: 129 APSLITSFVQAME 142
               ITS++  M+
Sbjct: 429 ----ITSYIIFMD 429

[Close]

BLAST of CmoCh08G000310.1 vs. TAIR 10
Match: AT3G50120.1 (Plant protein of unknown function (DUF247) )

HSP 1 Score: 61.6 bits (148), Expect = 7.9e-10
Identity = 42/131 (32.06%), Postives = 69/131 (52.67%), Query Frame = 0


Query: 17  LHILDLYKASLLC------PPIDRTKWCEEGKWKEKWKEEEKGELSGAEFQVIPPATKLH 76
           LH LD+++ SLL       P + R +W    +  +K ++           Q+I   T+L 
Sbjct: 309 LHCLDVFRRSLLRSSPKPEPRLTRKRWSRNTRVADKRRQ-----------QLIHCVTELK 368

Query: 77  EAGIKFKMSQTKSLKDVIFDEVEGVLSLPMLMVDDNTESTFLNVMAFEKLHVEGAAQEAP 136
           EAGIKF+  +T    D+ F    G L +P L++ D T+S FLN++AFE+ H++ +     
Sbjct: 369 EAGIKFRRRKTDRFWDMQFK--NGYLEIPRLLIHDGTKSLFLNLIAFEQCHIDSSND--- 421

Query: 137 SLITSFVQAME 142
             ITS++  M+
Sbjct: 429 --ITSYIIFMD 421

[Close]

BLAST of CmoCh08G000310.1 vs. TAIR 10
Match: AT3G50130.1 (Plant protein of unknown function (DUF247) )

HSP 1 Score: 59.7 bits (143), Expect = 3.0e-09
Identity = 39/125 (31.20%), Postives = 67/125 (53.60%), Query Frame = 0


Query: 17  LHILDLYKASLLCPPIDRTKWCEEGKWKEKWKEEEKGELSGAEFQVIPPATKLHEAGIKF 76
           LH LD+++ +LL P  +        +W  + +  +K      + Q+I   T+L EAGIKF
Sbjct: 342 LHCLDVFRRNLLRPCSNPEPRLSRMRWSWRTRVADK-----RQQQLIHCVTELREAGIKF 401

Query: 77  KMSQTKSLKDVIFDEVEGVLSLPMLMVDDNTESTFLNVMAFEKLHVEGAAQEAPSLITSF 136
           +  +T    D+ F    G L +P L++ D T+S F N++AFE+ H++ +       ITS+
Sbjct: 402 RTRKTDRFWDIRFK--NGYLEIPKLLIHDGTKSLFSNLIAFEQCHIDSSND-----ITSY 454

Query: 137 VQAME 142
           +  M+
Sbjct: 462 IIFMD 454

[Close]

BLAST of CmoCh08G000310.1 vs. TAIR 10
Match: AT3G50190.1 (Plant protein of unknown function (DUF247) )

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-08
Identity = 40/128 (31.25%), Postives = 67/128 (52.34%), Query Frame = 0


Query: 15  EFLHILDLYKASLLCPPI-DRTKWCEEGKWKEKWKEEEKGELSGAEFQVIPPATKLHEAG 74
           E LH LD+++ S+L P +    +      WK    ++ + +L       +   T+L EAG
Sbjct: 267 EELHCLDVFRRSVLQPSLKPEPRLSRRWSWKPVVADKRQQKL-------LHCVTELREAG 326

Query: 75  IKFKMSQTKSLKDVIFDEVEGVLSLPMLMVDDNTESTFLNVMAFEKLHVEGAAQEAPSLI 134
           IKFK  ++  L D+ F    G L +P L++ D T+S   N++AFE+ H++   Q     I
Sbjct: 327 IKFKRRKSDRLWDIQFK--NGCLEIPKLLIHDGTKSLLSNLIAFEQCHIDSTKQ-----I 380

Query: 135 TSFVQAME 142
           TS++  +E
Sbjct: 387 TSYIIFVE 380

The following BLAST results are available for this feature:

BLAST of CmoCh08G000310.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C897	1.1e-05	28.43	Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana OX=3702 GN=At3g02645 ...	[more]

BLAST of CmoCh08G000310.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H6V9	6.2e-55	78.95	UPF0481 protein At3g47200-like OS=Cucurbita moschata OX=3662 GN=LOC111461034 PE=...	[more]
A0A6J1KYV8	1.0e-25	49.67	UPF0481 protein At3g47200-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1KVQ6	1.0e-25	49.67	UPF0481 protein At3g47200-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1HB25	1.1e-24	50.99	UPF0481 protein At3g47200-like OS=Cucurbita moschata OX=3662 GN=LOC111461183 PE=...	[more]
A0A6J1D5C0	9.1e-22	48.30	UPF0481 protein At3g47200-like OS=Momordica charantia OX=3673 GN=LOC111017450 PE...	[more]

BLAST of CmoCh08G000310.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6592830.1	7.3e-58	81.41	UPF0481 protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7025238.1	1.4e-56	80.92	UPF0481 protein, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022960231.1	1.3e-54	78.95	UPF0481 protein At3g47200-like [Cucurbita moschata] >XP_022960232.1 UPF0481 prot...	[more]
XP_023513985.1	1.7e-43	66.89	UPF0481 protein At3g47200-like [Cucurbita pepo subsp. pepo]	[more]
XP_023004238.1	2.1e-25	49.67	UPF0481 protein At3g47200-like isoform X1 [Cucurbita maxima]	[more]

BLAST of CmoCh08G000310.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G50180.1	4.6e-10	33.33	Plant protein of unknown function (DUF247)	[more]
AT3G50140.1	7.9e-10	30.83	Plant protein of unknown function (DUF247)	[more]
AT3G50120.1	7.9e-10	32.06	Plant protein of unknown function (DUF247)	[more]
AT3G50130.1	3.0e-09	31.20	Plant protein of unknown function (DUF247)	[more]
AT3G50190.1	1.5e-08	31.25	Plant protein of unknown function (DUF247)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004158	Protein of unknown function DUF247, plant	PFAM	PF03140	DUF247	coord: 14..141 e-value: 3.9E-22 score: 79.1
IPR004158	Protein of unknown function DUF247, plant	PANTHER	PTHR31549	PROTEIN, PUTATIVE (DUF247)-RELATED-RELATED	coord: 49..141
None	No IPR available	PANTHER	PTHR31549:SF175	SUBFAMILY NOT NAMED	coord: 49..141

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh08G000310	CmoCh08G000310	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh08G000310.1:exon:4473	CmoCh08G000310.1:exon:4473	exon
CmoCh08G000310.1:exon:4474	CmoCh08G000310.1:exon:4474	exon
CmoCh08G000310.1:exon:4475	CmoCh08G000310.1:exon:4475	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh08G000310.1:cds	CmoCh08G000310.1:cds	CDS
CmoCh08G000310.1:cds	CmoCh08G000310.1:cds_2	CDS
CmoCh08G000310.1:cds	CmoCh08G000310.1:cds_3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh08G000310.1	CmoCh08G000310.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane