CmoCh08G000040.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh08G000040.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr08: 28313 .. 31332 (-)
Sequence length	801
RNA-Seq Expression	CmoCh08G000040.1
Synteny	CmoCh08G000040.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGTTTCTTGGTCGGAGACGGAGACGCCAGCAGCGTGGAGGGCGGAGGCCGGGATAGTACCGGAGCCAGTAGCGGCGATGATGGACGGCTCGGCCTGCTGTAGAAGCCACTGAATGGTCTCCCCATCGGTTTTATGGCCTAATTCGCGAGTCAATTGAAAGACGCGGGCGGCGCAGAGGGCAGGCATGCGGATCCTGCGGCCACGGCCATCGACTTTCTTGTGACGATCTTTGTTGGAGGTGCGTTTAGGAGCCAATTGTTGGTGGTGTTTGTTTTCATCTTTGGATGCAATTATGATATTGAAGTCTTTGATATCTGCTGATGGTGGTGGTGGTGGAGTTATTGTTGTTGGAGTTGATGCTGGTGGTGATGGCTTCTTCTTGTTGTGCTCTGCCATGTCTGCTAATGGGTGTGGGGATGGGGGGGCGGGGGGAGGACCCAAACAAAGGTGGGTTCCTCTGTGTGGACTAATGGGGTTTATGGGAGGAGGAGAGGAGAAAGAGAGAGATAGTCAGAAAAGAAAATGGGTCCTCCTCCTCCATGATTGAGTTGTTTGAAGAAGCTGACTTGGCTCACTCTTTTCTTTTTATTTTTTGACTCAAAATGGGGATTTCGAGCTTCCACTGTGTGCTTTTAAATGCATTACAGCTTGCTTCACCTCTCATCTTGTCATAAAGTCCAAACCAAAAGTGGATGAAATTTTAGTGTTTCTGGTGTTGCCTATTCATTCATATTACAATTAACTGTAATCTGAATTTAACTGCTCGCAGGGTTATGAACTGCGTTTATTTACTCCTTCTCCTTCTCCAGCATGTTTATCACATCTTACAACTATTTACTCCTTCTCCTTCTCCTTCATGTTTATCACATCTTACAACTATTTACTCCTTCTCCTTCTCCTTCATGTTTTATCACATCTTACAACACTTCCTCACTTCTCTAATCATCCACAAATTTATATGGTGGGTCAACTCAAATTAATATCAAATCGGTACAAATTTGGACTTTTCTTTTTCATTTTTGTTTAGTTTATGATCAGCCTCCTTTTATGGTTGAAATTAAATTTGGAAATATAAGTTTTTTTTTTTTTTTTTTGGGTGCAATAACTTTTTTAGGGCATGAAATGTTTTGGCTAATCGAAAAATGTGTGGAATTGGTGATTCTGATAAGCTATAGTAGCAATTATTAGTTGACATGTTGGATCATTATGATACCAGCTCTTACCAAACCAAATCTCCTTGCCAATCATATTGTTTCCTAGTTTTTAAAACCCTTACTCATTTTGTGCCACTAACTCACTGAATTGCTGAGCTTTTTCCCCCTTTCCCCCCTTTCCCCCCTTCATATATATATATATATGATTCCTTCAAAAACTTCTGTTCATGCTCAGCATCAACTTCAACAATTCAAATTTCATACTCCACTACTCCACCTACCATGTCAATTACCCCCAACATGTCTTCATTTTCGCAATTTAAATTCTCAATAATTATTGTGATGGAAGAATAAAAACGTTAGCAATTTTTAAAATAGTTTTGTGTTTCGTATGTTTTCCTTGTTTTTAAGATAAATTATGCAAGATCTCATGTCGATTGGAGAGAAAAACGAAACATTTTGTGCTAATTGATATTGTCAATCTCACGATTTTAAAATGTATCTATTAGGGATGATGAGAGTGAGTTCACATGTTGAGGTAGATAAGGTTTTAGAAGAATTTTGGTGGTTTTTTTTTTTTTTTTTTTTTTGTTAAGATGAATTTGAATTCTACCCATGATATCATTATTTATTAATTAAAGTATTAATGTTTTAATAAAAGTGCTCTAACGTTGGGTTTCTTTCTTTTCCTTGGAATTTTGATGGTGATTGGTAATGCGACAAAACACATTACAAAGAAATGTCAGCTTATTTGGGCAACAAATTTCCACTACACTTTTCTTGCTTTCATACTTGAAAATTGGAAATTTTAGGGGAAAATTTTCATTTGGAAAGAAAAAAAGAAAAAAAGGAGACGATAATAATGGGTAGGTGGCTAACATTTGTCCTTTTCTTCCATGGTTTCACATCCTGTGTTGGCCACCGAGGGAACACCTATGGGTCCCTTCTCTTAAAAACTTTGCCATTGACATATCACCCACCCTTTTCCAACATTTCCTTTTTCTTTTTTATTTTTTAAAACAATAAAATTATTGTTGAATTGGTTTTCAAAGGCGGTGTTTTTATTACATCACGAGTCTGAGGAGGAGGCTTTGTTTCATGAAATAATTGTCCTTTCCTATTGGGAATCAAAATTACATTCTTTCTCTGTCTTCTTTGTTTCCAAGTAGTTTCTAAGTCTGTTCCAGCTTGAATTTCATGCATCATTATAATGTCTTTTTTGGTATTAAGTCTTCTCTTGCAATGAAGGCCTGTGGTGGTTTCCTTCTCCTTTTCACTCCCATCCGCACGGTTGAGACGCCCTCCAGGGTGCCCACCTCTTCCGCTTCTTTCTTTTTCTTGCTCTTCCTTTTCTTCCTCCTTTTCCTCAATCAATACCCTCATACTTTCATGACCAACATGATTTTGCAGCACCCAGCTTTTGTTCTCCCACGACGCGGATGACAATGACACTGACGAGGAACAACAAACATCTTGGGGTGAGGTGAAGACCCAAAGCATAGCCGGAGGGAATGGATTAGATTGGGAAGATAGCTAATGCTAAAGATGAAGATGATGAGAGTGAAGACTGAGATTGTTTTCCTTATGAGTTTATAAGATGGAAGCCTTCAATCTTTTATCATTATCATTATGACACCAGAACTAGAAGGAAAAAGACAAATAAAAAAAATAAAACCAAAGCCGGAGTTGTTAGTTGGGACTCATTAATTGTGCAATAAAGATTGGTGTTTTGAATTCTGGAAATTTTGGGTTCCTTGTGCACAAAGTAGCCAAATAAGATATTTTGGTGGTGGGATTCAAACAATGCTACACTTTAATAATTGTGTGGTAACTTTTTGAAAAGTTAAAGAAGCATAGAGAA

mRNA sequence

ATGGAGGTTTCTTGGTCGGAGACGGAGACGCCAGCAGCGTGGAGGGCGGAGGCCGGGATAGTACCGGAGCCAGTAGCGGCGATGATGGACGGCTCGGCCTGCTACGCGGGCGGCGCAGAGGGCAGGCATGCGGATCCTGCGGCCACGGCCATCGACTTTCTTGTGACGATCTTTGTTGGAGGTGCGTTTAGGAGCCAATTGTTGGTGTCTTTGATATCTGCTGATGGTGGTGGTGGTGGAGTTATTGTTGTTGGAGTTGATGCTGGTGGTGATGGCTTCTTCTTGTTGTGCTCTGCCATGTCTGCTAATGGGTGTGGGGATGGGGGGGCGGGGGGAGGACCCAAACAAAGCACCCAGCTTTTGTTCTCCCACGACGCGGATGACAATGACACTGACGAGGAACAACAAACATCTTGGGGTGAGGTGAAGACCCAAAGCATAGCCGGAGGGAATGGATTAGATTGGGAAGATAGCTAATGCTAAAGATGAAGATGATGAGAGTGAAGACTGAGATTGTTTTCCTTATGAGTTTATAAGATGGAAGCCTTCAATCTTTTATCATTATCATTATGACACCAGAACTAGAAGGAAAAAGACAAATAAAAAAAATAAAACCAAAGCCGGAGTTGTTAGTTGGGACTCATTAATTGTGCAATAAAGATTGGTGTTTTGAATTCTGGAAATTTTGGGTTCCTTGTGCACAAAGTAGCCAAATAAGATATTTTGGTGGTGGGATTCAAACAATGCTACACTTTAATAATTGTGTGGTAACTTTTTGAAAAGTTAAAGAAGCATAGAGAA

Coding sequence (CDS)

ATGGAGGTTTCTTGGTCGGAGACGGAGACGCCAGCAGCGTGGAGGGCGGAGGCCGGGATAGTACCGGAGCCAGTAGCGGCGATGATGGACGGCTCGGCCTGCTACGCGGGCGGCGCAGAGGGCAGGCATGCGGATCCTGCGGCCACGGCCATCGACTTTCTTGTGACGATCTTTGTTGGAGGTGCGTTTAGGAGCCAATTGTTGGTGTCTTTGATATCTGCTGATGGTGGTGGTGGTGGAGTTATTGTTGTTGGAGTTGATGCTGGTGGTGATGGCTTCTTCTTGTTGTGCTCTGCCATGTCTGCTAATGGGTGTGGGGATGGGGGGGCGGGGGGAGGACCCAAACAAAGCACCCAGCTTTTGTTCTCCCACGACGCGGATGACAATGACACTGACGAGGAACAACAAACATCTTGGGGTGAGGTGAAGACCCAAAGCATAGCCGGAGGGAATGGATTAGATTGGGAAGATAGCTAA

Protein sequence

MEVSWSETETPAAWRAEAGIVPEPVAAMMDGSACYAGGAEGRHADPAATAIDFLVTIFVGGAFRSQLLVSLISADGGGGGVIVVGVDAGGDGFFLLCSAMSANGCGDGGAGGGPKQSTQLLFSHDADDNDTDEEQQTSWGEVKTQSIAGGNGLDWEDS

Homology

The following BLAST results are available for this feature:

BLAST of CmoCh08G000040.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh08G000040.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh08G000040.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh08G000040.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..158

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh08G000040	CmoCh08G000040	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh08G000040.1:exon:4973	CmoCh08G000040.1:exon:4973	exon
CmoCh08G000040.1:exon:4972	CmoCh08G000040.1:exon:4972	exon
CmoCh08G000040.1:exon:4971	CmoCh08G000040.1:exon:4971	exon
CmoCh08G000040.1:exon:4970	CmoCh08G000040.1:exon:4970	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh08G000040.1:three_prime_utr	CmoCh08G000040.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh08G000040.1:cds	CmoCh08G000040.1:cds_4	CDS
CmoCh08G000040.1:cds	CmoCh08G000040.1:cds_3	CDS
CmoCh08G000040.1:cds	CmoCh08G000040.1:cds_2	CDS
CmoCh08G000040.1:cds	CmoCh08G000040.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh08G000040.1	CmoCh08G000040.1-protein	polypeptide