CmoCh07G011150.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh07G011150.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	josephin-like protein
Location	Cmo_Chr07: 5886592 .. 5886948 (-)
Sequence length	357
RNA-Seq Expression	CmoCh07G011150.1
Synteny	CmoCh07G011150.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAAAATAAGGTCAAGCAGAGGAGTGAGTTTGAGGTCAGATGAAGGCACCGCCAAGCCAACAGCTCTCCAAAGAAACAGGAAAAGGGTGATCACAGTGTTATGGGTTTTCCGGCTGCCAAAATCCGGCAGATTCTCGCCGGAAAGTTTCCTCCGCCGCGTAGGCGCCAAAGTGGCCAAAGTTCTCCGCGCCGTGTCATTGAAAAAGAGGTCAGAGTGTTCAAAAAAGGCCTCCGCCGCTACTAACTTCAACAGATCCCATTCGGTGTCGGATTCCATGGAAGAATCTCACAGAGCTGAAGCTGTCAGAGATTGCATCCACTTCTTCAATTCCTCTTCTTCTTCAGCTCTTTGA

mRNA sequence

ATGTCAAAAATAAGGTCAAGCAGAGGAGTGAGTTTGAGGTCAGATGAAGGCACCGCCAAGCCAACAGCTCTCCAAAGAAACAGGAAAAGGGTGATCACAGTGTTATGGGTTTTCCGGCTGCCAAAATCCGGCAGATTCTCGCCGGAAAGTTTCCTCCGCCGCGTAGGCGCCAAAGTGGCCAAAGTTCTCCGCGCCGTGTCATTGAAAAAGAGGTCAGAGTGTTCAAAAAAGGCCTCCGCCGCTACTAACTTCAACAGATCCCATTCGGTGTCGGATTCCATGGAAGAATCTCACAGAGCTGAAGCTGTCAGAGATTGCATCCACTTCTTCAATTCCTCTTCTTCTTCAGCTCTTTGA

Coding sequence (CDS)

ATGTCAAAAATAAGGTCAAGCAGAGGAGTGAGTTTGAGGTCAGATGAAGGCACCGCCAAGCCAACAGCTCTCCAAAGAAACAGGAAAAGGGTGATCACAGTGTTATGGGTTTTCCGGCTGCCAAAATCCGGCAGATTCTCGCCGGAAAGTTTCCTCCGCCGCGTAGGCGCCAAAGTGGCCAAAGTTCTCCGCGCCGTGTCATTGAAAAAGAGGTCAGAGTGTTCAAAAAAGGCCTCCGCCGCTACTAACTTCAACAGATCCCATTCGGTGTCGGATTCCATGGAAGAATCTCACAGAGCTGAAGCTGTCAGAGATTGCATCCACTTCTTCAATTCCTCTTCTTCTTCAGCTCTTTGA

Protein sequence

MSKIRSSRGVSLRSDEGTAKPTALQRNRKRVITVLWVFRLPKSGRFSPESFLRRVGAKVAKVLRAVSLKKRSECSKKASAATNFNRSHSVSDSMEESHRAEAVRDCIHFFNSSSSSAL

Homology

[Close]

BLAST of CmoCh07G011150.1 vs. ExPASy TrEMBL
Match: A0A6J1GFL9 (josephin-like protein OS=Cucurbita moschata OX=3662 GN=LOC111453490 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 3.5e-32
Identity = 84/126 (66.67%), Postives = 96/126 (76.19%), Query Frame = 0


Query: 2   SKIRSSRGVSLRSDEG------TAKPTALQRNRKRVITVLWVFRLPKSGRFSPESFLRRV 61
           +K+ SSR VS  SD+G       AKP A  RNRKR+ITV WVFRLPKSGR  P SFLRR+
Sbjct: 3   TKLSSSRRVSFSSDQGAAAATSAAKPAAFPRNRKRLITVFWVFRLPKSGRLFPGSFLRRI 62

Query: 62  GAKVAKVLRAVSLKKRS---ECSKKASAATNFNRSHSVSDSMEESHRAEAVRDCIHFFNS 119
           GAKV KVLR VSL+KRS     S    + +NFNRSHSVS+SMEESHRAEAV+DCI+FFNS
Sbjct: 63  GAKVVKVLRYVSLRKRSASPASSSSLKSGSNFNRSHSVSESMEESHRAEAVKDCINFFNS 122

[Close]

BLAST of CmoCh07G011150.1 vs. ExPASy TrEMBL
Match: A0A6J1IJN3 (uncharacterized protein LOC111477703 OS=Cucurbita maxima OX=3661 GN=LOC111477703 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.9e-31
Identity = 83/125 (66.40%), Postives = 97/125 (77.60%), Query Frame = 0


Query: 2   SKIRSSRGVSLRSDEG----TAKPTALQRNRKRVITVLWVFRLPKSGRFSPESFLRRVGA 61
           +K+ SSR VS  SD+G     AKP A  RNRKR+ITV WVF+LPKSGR  P SFLRR+GA
Sbjct: 3   TKLSSSRRVSFSSDQGAAAAAAKPAAFPRNRKRLITVFWVFQLPKSGRLFPGSFLRRIGA 62

Query: 62  KVAKVLRAVSLKKRS----ECSKKAS--AATNFNRSHSVSDSMEESHRAEAVRDCIHFFN 117
           KV KVLR VSL+KRS     CS  +S  + +NFNRSHSVS+SMEESHRAEAV+DCI+FFN
Sbjct: 63  KVVKVLRYVSLRKRSASPASCSSSSSLKSGSNFNRSHSVSESMEESHRAEAVKDCINFFN 122

[Close]

BLAST of CmoCh07G011150.1 vs. ExPASy TrEMBL
Match: A0A0A0L2K7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G308510 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 5.2e-28
Identity = 79/122 (64.75%), Postives = 90/122 (73.77%), Query Frame = 0


Query: 2   SKIRSSRGVSLRSDEGTAKPTALQRNRKRVITVLWVFRLPKSGRFSPESFLRRVGAKVAK 61
           +K+ S R VS  SD+  A   A  R RKR I V WVFRLPKS RFSPE FLRR+GAK+AK
Sbjct: 3   TKLSSGRRVSFSSDQAAA---AKSRIRKRPIIVFWVFRLPKSARFSPEKFLRRLGAKMAK 62

Query: 62  VLRAVSLKKRSECSKKASAATN------FNRSHSVSDSMEESHRAEAVRDCIHFFNSSSS 118
           VLR VSL+KRS  S  +S+  N      FNRSHSVSDSMEESHRAEAV+DCI FFNSS+S
Sbjct: 63  VLRYVSLRKRSTSSTNSSSLKNNNGSSKFNRSHSVSDSMEESHRAEAVKDCIQFFNSSNS 121

[Close]

BLAST of CmoCh07G011150.1 vs. ExPASy TrEMBL
Match: A0A061EQH2 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_021741 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.9e-14
Identity = 55/121 (45.45%), Postives = 80/121 (66.12%), Query Frame = 0


Query: 5   RSSRGVSLRSDEGTAKPTALQR----------NRKRVITVLWVFRLPKSGRFSPESFLRR 64
           R+S+ VS  S +   +PT L +          NR+RV+  ++ FRL +S RFSP   LRR
Sbjct: 4   RTSKRVSF-SPDVNERPTILLKHGGSTGRTRGNRRRVVAGIFTFRLVRSSRFSPARLLRR 63

Query: 65  VGAKVAKVLRAVSLKKRSECSKKASAATNFNRSHSVSDSMEESHRAEAVRDCIHFFNSSS 116
           +GAKVA+ LR VS+++ S   K +S+++N  RS S+++S+ +SHRAEA+ DCI F NSSS
Sbjct: 64  LGAKVARALRFVSMRRNSNSHKVSSSSSNLARSRSLAESI-DSHRAEAIEDCIEFLNSSS 122

[Close]

BLAST of CmoCh07G011150.1 vs. ExPASy TrEMBL
Match: A0A6J1AQZ4 (josephin-like protein OS=Herrania umbratica OX=108875 GN=LOC110420321 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.1e-13
Identity = 54/121 (44.63%), Postives = 79/121 (65.29%), Query Frame = 0


Query: 5   RSSRGVSLRSDEGTAKPTALQRN----------RKRVITVLWVFRLPKSGRFSPESFLRR 64
           R+S+ VS  S +   +PT L ++          R+RV+  ++ FRL +S RFSP   LRR
Sbjct: 4   RTSKRVSF-SPDVNERPTILLKHGGSTCRTRGKRRRVVAGIFTFRLVRSSRFSPARLLRR 63

Query: 65  VGAKVAKVLRAVSLKKRSECSKKASAATNFNRSHSVSDSMEESHRAEAVRDCIHFFNSSS 116
           +GAKVA+ LR VS+ + S   K +S+++N  RS S+++S+ +SHRAEA+ DCI F NSSS
Sbjct: 64  LGAKVARALRFVSMGRNSNSHKVSSSSSNLARSRSLAESI-DSHRAEAIEDCIEFLNSSS 122

[Close]

BLAST of CmoCh07G011150.1 vs. NCBI nr
Match: KAG6595400.1 (hypothetical protein SDJN03_11953, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027410.1 hypothetical protein SDJN02_11422, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 218.0 bits (554), Expect = 4.3e-53
Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MSKIRSSRGVSLRSDEGTAKPTALQRNRKRVITVLWVFRLPKSGRFSPESFLRRVGAKVA 60
           MSKIRSSRGVSLRSDEGTAKPTALQRNRKRVITVLWVFRLPKSGRFSPESFLRRVGAKVA
Sbjct: 1   MSKIRSSRGVSLRSDEGTAKPTALQRNRKRVITVLWVFRLPKSGRFSPESFLRRVGAKVA 60

Query: 61  KVLRAVSLKKRSECSKKASAATNFNRSHSVSDSMEESHRAEAVRDCIHFFNSSSSSA 118
           KVLRAVSLKKRSECSKKASAATNFNRSHSVSDSMEESHRAEAVRDCIHFFNSSSSS+
Sbjct: 61  KVLRAVSLKKRSECSKKASAATNFNRSHSVSDSMEESHRAEAVRDCIHFFNSSSSSS 117

[Close]

BLAST of CmoCh07G011150.1 vs. NCBI nr
Match: XP_023518083.1 (uncharacterized protein LOC111781626 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 213.4 bits (542), Expect = 1.1e-51
Identity = 113/118 (95.76%), Postives = 116/118 (98.31%), Query Frame = 0


Query: 1   MSKIRSSRGVSLRSDEGTAKPTALQRNRKRVITVLWVFRLPKSGRFSPESFLRRVGAKVA 60
           MSKIRSSRGVSLRSDEGTAKPT LQRNRKRVITVLWVFRLPKSGRFSPESFLRRVGAKVA
Sbjct: 1   MSKIRSSRGVSLRSDEGTAKPTTLQRNRKRVITVLWVFRLPKSGRFSPESFLRRVGAKVA 60

Query: 61  KVLRAVSLKKRSECSKKASAATNFNRSHSVSDSMEESHRAEAVRDCIHFFNSSSSSAL 119
           KV+R VSLKKRSECSKKASAATNFNRSHSVSDSMEESHRAEAV+DCIHFFNSSSSSA+
Sbjct: 61  KVVRYVSLKKRSECSKKASAATNFNRSHSVSDSMEESHRAEAVKDCIHFFNSSSSSAV 118

[Close]

BLAST of CmoCh07G011150.1 vs. NCBI nr
Match: KAG6603596.1 (hypothetical protein SDJN03_04205, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 147.9 bits (372), Expect = 5.5e-32
Identity = 86/131 (65.65%), Postives = 100/131 (76.34%), Query Frame = 0


Query: 2   SKIRSSRGVSLRSDEG-----TAKPTALQRNRKRVITVLWVFRLPKSGRFSPESFLRRVG 61
           +K+ SSR VS  SD+G      AKP A  RNRKR+ITV WVFRLPKSGR  P SFLRR+G
Sbjct: 3   TKLSSSRRVSFSSDQGAAAASAAKPAAFPRNRKRLITVFWVFRLPKSGRLFPGSFLRRIG 62

Query: 62  AKVAKVLRAVSLKKRS----ECSKKASAA-----TNFNRSHSVSDSMEESHRAEAVRDCI 119
           AKV KVLR VSL+KRS     CS  +S++     +NFNRSHSVS+SMEESHRAEAV+DCI
Sbjct: 63  AKVVKVLRYVSLRKRSASPASCSSSSSSSSLKSGSNFNRSHSVSESMEESHRAEAVKDCI 122

[Close]

BLAST of CmoCh07G011150.1 vs. NCBI nr
Match: XP_022950374.1 (josephin-like protein [Cucurbita moschata])

HSP 1 Score: 147.5 bits (371), Expect = 7.2e-32
Identity = 84/126 (66.67%), Postives = 96/126 (76.19%), Query Frame = 0


Query: 2   SKIRSSRGVSLRSDEG------TAKPTALQRNRKRVITVLWVFRLPKSGRFSPESFLRRV 61
           +K+ SSR VS  SD+G       AKP A  RNRKR+ITV WVFRLPKSGR  P SFLRR+
Sbjct: 3   TKLSSSRRVSFSSDQGAAAATSAAKPAAFPRNRKRLITVFWVFRLPKSGRLFPGSFLRRI 62

Query: 62  GAKVAKVLRAVSLKKRS---ECSKKASAATNFNRSHSVSDSMEESHRAEAVRDCIHFFNS 119
           GAKV KVLR VSL+KRS     S    + +NFNRSHSVS+SMEESHRAEAV+DCI+FFNS
Sbjct: 63  GAKVVKVLRYVSLRKRSASPASSSSLKSGSNFNRSHSVSESMEESHRAEAVKDCINFFNS 122

[Close]

BLAST of CmoCh07G011150.1 vs. NCBI nr
Match: XP_022977351.1 (uncharacterized protein LOC111477703 [Cucurbita maxima])

HSP 1 Score: 144.4 bits (363), Expect = 6.1e-31
Identity = 83/125 (66.40%), Postives = 97/125 (77.60%), Query Frame = 0


Query: 2   SKIRSSRGVSLRSDEG----TAKPTALQRNRKRVITVLWVFRLPKSGRFSPESFLRRVGA 61
           +K+ SSR VS  SD+G     AKP A  RNRKR+ITV WVF+LPKSGR  P SFLRR+GA
Sbjct: 3   TKLSSSRRVSFSSDQGAAAAAAKPAAFPRNRKRLITVFWVFQLPKSGRLFPGSFLRRIGA 62

Query: 62  KVAKVLRAVSLKKRS----ECSKKAS--AATNFNRSHSVSDSMEESHRAEAVRDCIHFFN 117
           KV KVLR VSL+KRS     CS  +S  + +NFNRSHSVS+SMEESHRAEAV+DCI+FFN
Sbjct: 63  KVVKVLRYVSLRKRSASPASCSSSSSLKSGSNFNRSHSVSESMEESHRAEAVKDCINFFN 122

[Close]

BLAST of CmoCh07G011150.1 vs. TAIR 10
Match: AT3G09032.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01225.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 47.8 bits (112), Expect = 7.2e-06
Identity = 37/101 (36.63%), Postives = 55/101 (54.46%), Query Frame = 0


Query: 27  NRKRVITV-LWVFRLPKSGRFSPESFLRRVGAKVAKVLRAVSLKKR-------------S 86
           +R+RV+ V +  F L  S   +    ++R+GA+ AK LR +S ++              S
Sbjct: 35  SRRRVVLVGILSFGLRSSP--AARKLIQRIGARFAKTLRFISFRRNTTDRRKTSSFLLPS 94

Query: 87  ECSKKASAATNFNRSHSVSDSMEESHRAEAVRDCIHFFNSS 114
             S  +S+A    RS SV+++  ESHRAEA+ DCI F NSS
Sbjct: 95  SSSSSSSSAIYMKRSKSVNET--ESHRAEAIEDCIEFLNSS 131

[Close]

BLAST of CmoCh07G011150.1 vs. TAIR 10
Match: AT1G07300.1 (josephin protein-related )

HSP 1 Score: 44.3 bits (103), Expect = 8.0e-05
Identity = 30/102 (29.41%), Postives = 50/102 (49.02%), Query Frame = 0


Query: 16  EGTAKPTALQ--RNRKRVITVLWVFRLPKSGRFSPESFLRRVGAKVAKVLRAVSLKKRSE 75
           + +AK TA++    +    T     RLP+    +    ++ +G K AK LR V ++K+  
Sbjct: 19  DASAKQTAIKGPYGKSPGCTTSCGLRLPRKTEVTAAKLIKHLGCKFAKGLRLVVMRKKKR 78

Query: 76  CSKKASAATNFNRSHSVSDSMEESHRAEAVRDCIHFFNSSSS 116
                 ++ +      +     +SHR+EA+ DCI F NSSSS
Sbjct: 79  SPPSKVSSFSGRSQPPIIPINNDSHRSEAIEDCIQFINSSSS 120

[Close]

BLAST of CmoCh07G011150.1 vs. TAIR 10
Match: AT5G01225.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09032.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 42.7 bits (99), Expect = 2.3e-04
Identity = 33/96 (34.38%), Postives = 49/96 (51.04%), Query Frame = 0


Query: 25  QRNRKRVITVLWVFRLPKSGRFSPESFLRRVGAKVAKVLRAVSL-----KKRSECSKKAS 84
           +  R+RV+  ++ F    S   + +  LR +G +V K  R +S      K     S   S
Sbjct: 30  RHGRRRVVVGIFSFSFSDSPA-TTKRLLRSIGDRVGKTFRYISFGRMNTKTTPSSSSNVS 89

Query: 85  AATNFNRSHSVSDSMEESHRAEAVRDCIHFFNSSSS 116
           ++    +S S++ S  ESHRAEA+ DCI F NS SS
Sbjct: 90  SSLYLMKSKSLNGS--ESHRAEAIEDCIEFLNSCSS 122

The following BLAST results are available for this feature:

BLAST of CmoCh07G011150.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh07G011150.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GFL9	3.5e-32	66.67	josephin-like protein OS=Cucurbita moschata OX=3662 GN=LOC111453490 PE=4 SV=1	[more]
A0A6J1IJN3	2.9e-31	66.40	uncharacterized protein LOC111477703 OS=Cucurbita maxima OX=3661 GN=LOC111477703...	[more]
A0A0A0L2K7	5.2e-28	64.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G308510 PE=4 SV=1	[more]
A0A061EQH2	1.9e-14	45.45	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_021741 PE=4 SV=1	[more]
A0A6J1AQZ4	2.1e-13	44.63	josephin-like protein OS=Herrania umbratica OX=108875 GN=LOC110420321 PE=4 SV=1	[more]

BLAST of CmoCh07G011150.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6595400.1	4.3e-53	99.15	hypothetical protein SDJN03_11953, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023518083.1	1.1e-51	95.76	uncharacterized protein LOC111781626 [Cucurbita pepo subsp. pepo]	[more]
KAG6603596.1	5.5e-32	65.65	hypothetical protein SDJN03_04205, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022950374.1	7.2e-32	66.67	josephin-like protein [Cucurbita moschata]	[more]
XP_022977351.1	6.1e-31	66.40	uncharacterized protein LOC111477703 [Cucurbita maxima]	[more]

BLAST of CmoCh07G011150.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09032.1	7.2e-06	36.63	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G07300.1	8.0e-05	29.41	josephin protein-related	[more]
AT5G01225.1	2.3e-04	34.38	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR34355:SF1	JOSEPHIN-LIKE PROTEIN	coord: 23..116
None	No IPR available	PANTHER	PTHR34355	JOSEPHIN-LIKE PROTEIN	coord: 23..116

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh07G011150	CmoCh07G011150	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh07G011150.1:exon:9109	CmoCh07G011150.1:exon:9109	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh07G011150.1:cds	CmoCh07G011150.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh07G011150.1	CmoCh07G011150.1-protein	polypeptide