CmoCh06G005520.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G005520.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr06: 2669280 .. 2672647 (+)
Sequence length	417
RNA-Seq Expression	CmoCh06G005520.1
Synteny	CmoCh06G005520.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGATATTGAATTACATGAGCAAGAACGAAGTAAAGACAATGTTGTCACGAAATGAGAATCAAAAGACCAAAGAGATAGACATACAAAGGCTATTTTCAAGTGATCCAAACAAGATTCCTCGACTTCTGCGCGCCTCCATTTCTCGTAGAACAAGTAAAACTTCACAATTTCATGACCAATGCTTTCAGGTTCCAGACTAGAGTTCAAGAAGTCCTTGACATCTCTAAGAGAAGTACTTGGACCGAGGTTAAAATGACCGATAGCTTGTATAATTCCAGCAGCACATCTCTCTGAAGCATGAATAATCTTGCTGTTGTCCTTGGCATTTTCAGCATGCCATTGCAACAATTCCTCCTGGGCATTGCTAACCTACATAATACATAATATTTCATAGGTGGAAAAATGAAATAGAATTATCTATGATGTTAACGAATCGTAATGCAGATGAACTACCATGACACCAAATACGTCTGGAATGCTAAATAGCTCAGCATCGTTCCCCGAGTCACCACAAACAAGAGTATTAGTTGGTAGTTTCCCGATCGACTTGAATTTTTTGTGCAGGTAAGCAAGCGCTTGTCCTTTTCCAGCACCTTGTGGTAATATATCCAAATCTATCCCTCCACTGTAGATTATTTTTACATCCAACTGATAATAAGCACAAAAAAGGTAGCTTCATGGTTAAAATTCCTTCTTGACCCAATGGTTGGTACACGAGCTTAAATGATAGACGCTGTGATACGACTCAGTCAACAGATAAAAAGTTGTACATGAAACCTTACCCCGCGTCTCTCCATAGACTCAGAAAGAGCCTTGGTAACAGCCTGAGCCTTATCTTTCTGAATGTAGAAGCTAACCTTGTGTGGTCGTTGTTCTGACTCGGCCTACATGAACCCAAAACGTTCAGTCTTTTACATGACTTATACCTTACTGCAATGTTCTTTATTCAACCTCAAAAGTGTAAACAGTACCTGAGGAGTAAGTTCAGAAAACTTGCTGGCTTCCTCAATGACTATGTTCTTATCCCACTTTTGATTTAAAACATCAACCCAACCTTCATCAGGCACCATTGAGTGGCCATAGGTTATCTCAGTTCCCACAGACATTATGGTAATGTCAGGAGTTAACATAGGTTTCTCTTTCCTTAGCTCTTTGTACAGAGTGGGGGATCTTCCAGTTGAGAAAACAAGCAGAGAATCGTGACGGTAATTGGCTTCCCATAATGCATTAAACCTCAACAGAGAAAAGTTCTCTGAATCGTGATGATCGACCTTAAATGAAACCGTTCAACAGATTAGATTGCTGCCAGAAGGAATTGGAGTTGTAAAATAATAAACGATGTATTAAAGATCTAACCATGGTATGATCGAGATCTGAAACTATCATGAGACGCGCTGAAATACTAAGCCTGTCCATGATTGCAACCCTCGGGCCGATACTGTAGTTGAGACAATCTAGAATACAACTCAAAAGGTCATCCAAATTTTAATAGCAGGAGTACAATTAAAGATGAAAAATATACTCATGTTCAGCTCAGGAGATATGAGAAATGGATGAAAGTTTTATTCAGATGAATAAATTCTTTATAGCTTCATATTGAGCATTTGCATGAGCATTCAGAAGTTGTCAACTTCTTTCTGTTTGTAAGTATAACATTACTTGACATTATTTTACATAGCCATGACGTGGCAACTTAAGTCCACCGCTAGTAGATATTGTCCTCTTTGGGCTTTCCCTTCCGAACTTCCCCTCAAGGTTCTAAAACGCATCTACTAGAAAAAGGTTTCCACATCCTTATAAGGAATGCTTCGTTCCCCTCTCCAACCAATGTGAGGGGGTCCAACGTCCTCATTGGCACACCGCCCGGTGTCTGGCTTTGATATCATTTGTAATAGCTCAAGCCCACCACTAGCAGATATTGTTCTCTGTGGATTTTTCCTTTCAGGCTTCCCCTCAAGGTTTTAAAACGCGTATACTAGGAAGAGGTTTCCACACCCTTATAAGGAATGCTTCGTTCCCCTCTCCAACCAACGTGAGATCTCAAAGTCCACTCCATTGGGGGTCCAGCGTCCTCATTGACACACTGCCCGATGTCTGGCTTTGATATCATTTGTAACAGTTCAAGCCTACCGCTAGCAGATATTGTTTGATTTTTCCTTTCAGGCTTCCCCTCAAGGTTTTAAAACGCGTCTACTAGGAAGAGGTTTCCACACCCTTATAAGGAATGTTTCGTTCTCCTCTCCAACCAATGTAGGATCTCACACATGAGGTGTAGATACATGGTTTCCTTTATTTATTATTTCAAATACAAAGAGGGGCGGAAAGCCAGACCCCAACCCAAAGGAGATTACAAAACGTATTCAAATTGGGCAAAAAGAATGTTTATACAATAATTATTGAACGGAGGAGAAAGTTAACACCATGAGATCCAAAATGGATAAAGATTCTATAAATCAATAAGAAGAGTTTTCTTTCTCGTTGATGATTCAATTGTTCCTTTGGAGCCAAAGGGTAAAAAAAAAAGTCTAACAAAGTGAAGCTAAAGAATCTTCTTCGTCTTTCGGACGGGAAGCCCGACCACTATTAACAAAAAGAACAAGGTAAAGTCGAAAGCAACTTCAGAAACTTCAGCAAAGGAGCAATTGAGAAAAAGGTAGTCAGGGGTACATCGCATCGCCAAGGCGAAATCACATGAAGGGAGTTGCTTTCGAATCACGTCATGGGCGTTTAAACTCTTGGTGAATAAGCTCCCAAATGCTTAGATACATTCACAAGAAAGGATTTCTTGTATACAAAAAAAAAAAGTTTTAGGCTAAAGTTTTTAAGATTCAATCCCAGAAAACACAAATTTCACATAACATTTACTTGATCAATCAAATCTTAATCTACCAACTAACATAATCCATCATCTACTCAAAGAAGGCCACAGGATTGATTCATATGATGAACAGAAGCAAGTTTAACAATCAAAACGATTGGGTAAGCTAGCCAAACAGTAAAGTAATCGAGCTCTAATGGCCAAATTTAACAATCAAAACTAGTTGAAAACCTCCAACCCAAAGGAACAATGGCATCAACTAAAACAATCTAAAGAACAATCGCAACAACGAAATCCCTAATCATTTCCTTCGATTCCGATATTTTCCCAGTAACCAAACAATCGATGAAGATCGCACCAATCGCGACAACTCAAAACGAGAAGGAAAAACAAAATAACAAAACACTTACCCCCGCACTGTCGATCACCCCACCTGAAAATAAGCCGCACCCACCAAGAATTGACGCTGAAACATCAAGAAAAGGGCATGATCAAATCAAAATGTCTCCGGATTCACAGAAACTAGAAACTGGGTGTAATTTGTAA

mRNA sequence

ATGCTGATATTGAATTACATGAGCAAGAACGAAGTAAAGACAATGTTGTCACGAAATGAGAATCAAAAGACCAAAGAGATAGACATACAAAGGCTATTTTCAAGTGATCCAAACAAGATTCCTCGACTTCTGCGCGCCTCCATTTCTCGTAGAACAAAGTGGGGGATCTTCCAGTTGAGAAAACAAGCAGAGAATCGTGACGTAACCAAACAATCGATGAAGATCGCACCAATCGCGACAACTCAAAACGAGAAGGAAAAACAAAATAACAAAACACTTACCCCCGCACTGTCGATCACCCCACCTGAAAATAAGCCGCACCCACCAAGAATTGACGCTGAAACATCAAGAAAAGGGCATGATCAAATCAAAATGTCTCCGGATTCACAGAAACTAGAAACTGGGTGTAATTTGTAA

Coding sequence (CDS)

ATGCTGATATTGAATTACATGAGCAAGAACGAAGTAAAGACAATGTTGTCACGAAATGAGAATCAAAAGACCAAAGAGATAGACATACAAAGGCTATTTTCAAGTGATCCAAACAAGATTCCTCGACTTCTGCGCGCCTCCATTTCTCGTAGAACAAAGTGGGGGATCTTCCAGTTGAGAAAACAAGCAGAGAATCGTGACGTAACCAAACAATCGATGAAGATCGCACCAATCGCGACAACTCAAAACGAGAAGGAAAAACAAAATAACAAAACACTTACCCCCGCACTGTCGATCACCCCACCTGAAAATAAGCCGCACCCACCAAGAATTGACGCTGAAACATCAAGAAAAGGGCATGATCAAATCAAAATGTCTCCGGATTCACAGAAACTAGAAACTGGGTGTAATTTGTAA

Protein sequence

MLILNYMSKNEVKTMLSRNENQKTKEIDIQRLFSSDPNKIPRLLRASISRRTKWGIFQLRKQAENRDVTKQSMKIAPIATTQNEKEKQNNKTLTPALSITPPENKPHPPRIDAETSRKGHDQIKMSPDSQKLETGCNL

Homology

The following BLAST results are available for this feature:

BLAST of CmoCh06G005520.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh06G005520.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh06G005520.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..127
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..138
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..99

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh06G005520	CmoCh06G005520	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G005520.1:exon:6568	CmoCh06G005520.1:exon:6568	exon
CmoCh06G005520.1:exon:6567	CmoCh06G005520.1:exon:6567	exon
CmoCh06G005520.1:exon:6566	CmoCh06G005520.1:exon:6566	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G005520.1:cds	CmoCh06G005520.1:cds	CDS
CmoCh06G005520.1:cds	CmoCh06G005520.1:cds_2	CDS
CmoCh06G005520.1:cds	CmoCh06G005520.1:cds_3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh06G005520.1	CmoCh06G005520.1-protein	polypeptide