CmoCh06G005000.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G005000.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	B3 domain-containing protein At5g06250-like
Location	Cmo_Chr06: 2406026 .. 2407883 (+)
Sequence length	805
RNA-Seq Expression	CmoCh06G005000.1
Synteny	CmoCh06G005000.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCCAAAATGTCCTTAAACCACTTCTCTTCAGACTGCCATCTCCACCACCCCAAATCCTCCGCCTCCGCCGTCGACCACCACCTCATCCACCACCACCACAAGCACCCCATGTTCGAAAAGCCCTTGACTCCCAGCGACGTTGGCAAGCTCAACCGCCTCGTCATCCCCAAGCAATATGCTGAAAAATATTTCCCACTTTCCCCCGGCGGCGACACGGCGGACAAGGGCTTGCTTCTTAGCTTCGAAGATGAGTCCGGTAAGATGTGGCGCTTCCGTTACTCGTATTGGAATAGTAGCCAGAGCTATGTGCTCACTAAAGGGTGGACCCGCTTTGTCAAAGAGAAGCGCCTTGACGCCGGTGATGTCGTCGTCTTTGAACGCCACCGCCGTGATGGGGATAGGTTGTTCATTGGGTGGAAGCGGCGCTCGCCAGTGTCCACGGCGGAGACGGCGGCGGCGACTAGAATCTTCTGTTCTTCAAACCCATATCCTTCTCATCATCATCATCATAATCATAATCATCTTCCTTCACCGCCATACCAATCTTATGATTGTCCTCATGCAGGTATTTTTGTCAAATTTTCACCCTTTTATTTATCCATTAATTACCCAGAAATTAATGTAATATCTTTTATATTAATTTCTTTATTCCATAAAAAAAGGATTTAAAAAATGAAAGCTTGATGTACGTGCATTGTTTTCAGAGTCCTCTGTTCAGAGTCAAACAGTGTCGGTTGGGAATTCAAAGATACTGCGTCTGTTCGGGGTGGACTTGGAGTGCCAAACCGACGTGTCGGAACCCGAACAGCCCTCGACGCTCGGTGGCGGATCGGGTCTATCGGGTCAAGATCCAACCCGTCACAGCTTCTACACACACTGACACTACGCTCCTTCTCTTCCTCATCACATGGTATGACAACTCAACTCCATATTATCACTATTATTATTTTTCCCCACCTTTGAATTTGTTTCATCTAATCAGACAGATTAGAGTCAAAGTGAGATAGGAAAGGAAGAGAACAAAAAAAGAAAAAAGAAAAAAGAAAAAAAGGGAGTGCCATGGGTTATTGTTGCATTTATTAAATGGAATGGTCTCCTCTTTTGGCAACAAAAATCTGTGAATTAATTTAGAAATGTACCTGCAAAGATTGCTCATTTTAATGATATGATTCAATGTCATATGCTCACCCATTTTAAGGACAAAACTATAATTAAATGAAAAGAAATAACATGCGAGTCACATATTGGCTAAAATAAAATGAATATAAACCCACAAAAGATGATTTAGGCTTCTAACCTTGTAGCAATCTGGGATCAATACAAGGTCAACCAGTTCACTATTTTGTAGTCTGTGGCTATAATAAAGAAAACCCAAATCAATGAATAAGAAAGATAATACAAATTTAGTTTTTTTTTTTTTTTTTTTTTTTGGAGAGAGAGAGAGAGAGAGAGTTGAAGAAGAAAAGGAGAAAGGGAATGGAAGGTTTCCAGATTGTAAGGGGAACATCGTACAAGGACAGAAGCACCAGAGAAATGATATCGGACCAAAAACTCTGGCACAAATGATATCACACTCTTCCTTTCTTCACTTTCAGAAATCATATGCACAAAAAGTTCAAAGCCAACTCTTCTTATTAGCAGAGCATTACACACTATGGACCAACCAACCCCTTCCAGTTTTTATTTCTACAACACCTCTCTCTCTCTCGAGTCTAACAAATCACAGGAAAATCTGCTTGATTATCTACACAAACACACACATATTTGTATTTTACTGTAACAGGTGTGTCATTTTATGGGAGTTCTAAGATGAGGTTGTAACAGAATTCCACTTTCCCACAAGATGTGAAGCAGGC

mRNA sequence

CTTCCAAAATGTCCTTAAACCACTTCTCTTCAGACTGCCATCTCCACCACCCCAAATCCTCCGCCTCCGCCGTCGACCACCACCTCATCCACCACCACCACAAGCACCCCATGTTCGAAAAGCCCTTGACTCCCAGCGACGTTGGCAAGCTCAACCGCCTCGTCATCCCCAAGCAATATGCTGAAAAATATTTCCCACTTTCCCCCGGCGGCGACACGGCGGACAAGGGCTTGCTTCTTAGCTTCGAAGATGAGTCCGGTAAGATGTGGCGCTTCCGTTACTCGTATTGGAATAGTAGCCAGAGCTATGTGCTCACTAAAGGGTGGACCCGCTTTGTCAAAGAGAAGCGCCTTGACGCCGGTGATGTCGTCGTCTTTGAACGCCACCGCCGTGATGGGGATAGGTTGTTCATTGGGTGGAAGCGGCGCTCGCCAGTGTCCACGGCGGAGACGGCGGCGGCGACTAGAATCTTCTGTTCTTCAAACCCATATCCTTCTCATCATCATCATCATAATCATAATCATCTTCCTTCACCGCCATACCAATCTTATGATTGTCCTCATGCAGAGTCCTCTGTTCAGAGTCAAACAGTGTCGGTTGGGAATTCAAAGATACTGCGTCTGTTCGGGGTGGACTTGGAGTGCCAAACCGACGTGTCGGAACCCGAACAGCCCTCGACGCTCGGTGGCGGATCGGGTCTATCGGGTCAAGATCCAACCCGTCACAGCTTCTACACACACTGACACTACGCTCCTTCTCTTCCTCATCACATGAATTCCACTTTCCCACAAGATGTGAAGCAGGC

Coding sequence (CDS)

ATGTCCTTAAACCACTTCTCTTCAGACTGCCATCTCCACCACCCCAAATCCTCCGCCTCCGCCGTCGACCACCACCTCATCCACCACCACCACAAGCACCCCATGTTCGAAAAGCCCTTGACTCCCAGCGACGTTGGCAAGCTCAACCGCCTCGTCATCCCCAAGCAATATGCTGAAAAATATTTCCCACTTTCCCCCGGCGGCGACACGGCGGACAAGGGCTTGCTTCTTAGCTTCGAAGATGAGTCCGGTAAGATGTGGCGCTTCCGTTACTCGTATTGGAATAGTAGCCAGAGCTATGTGCTCACTAAAGGGTGGACCCGCTTTGTCAAAGAGAAGCGCCTTGACGCCGGTGATGTCGTCGTCTTTGAACGCCACCGCCGTGATGGGGATAGGTTGTTCATTGGGTGGAAGCGGCGCTCGCCAGTGTCCACGGCGGAGACGGCGGCGGCGACTAGAATCTTCTGTTCTTCAAACCCATATCCTTCTCATCATCATCATCATAATCATAATCATCTTCCTTCACCGCCATACCAATCTTATGATTGTCCTCATGCAGAGTCCTCTGTTCAGAGTCAAACAGTGTCGGTTGGGAATTCAAAGATACTGCGTCTGTTCGGGGTGGACTTGGAGTGCCAAACCGACGTGTCGGAACCCGAACAGCCCTCGACGCTCGGTGGCGGATCGGGTCTATCGGGTCAAGATCCAACCCGTCACAGCTTCTACACACACTGA

Protein sequence

MSLNHFSSDCHLHHPKSSASAVDHHLIHHHHKHPMFEKPLTPSDVGKLNRLVIPKQYAEKYFPLSPGGDTADKGLLLSFEDESGKMWRFRYSYWNSSQSYVLTKGWTRFVKEKRLDAGDVVVFERHRRDGDRLFIGWKRRSPVSTAETAAATRIFCSSNPYPSHHHHHNHNHLPSPPYQSYDCPHAESSVQSQTVSVGNSKILRLFGVDLECQTDVSEPEQPSTLGGGSGLSGQDPTRHSFYTH

Homology

[Close]

BLAST of CmoCh06G005000.1 vs. ExPASy Swiss-Prot
Match: Q9FNI3 (B3 domain-containing protein At5g06250 OS=Arabidopsis thaliana OX=3702 GN=At5g06250 PE=3 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 3.8e-54
Identity = 131/274 (47.81%), Postives = 170/274 (62.04%), Query Frame = 0


Query: 1   MSLNHFSSD----------CHLHHPKSSASAVDHHLIHHHHKHPMFEKPLTPSDVGKLNR 60
           MS+NH+S+D           H H   +S +      +H   K  +FEK LTPSDVGKLNR
Sbjct: 1   MSVNHYSTDHHHTLLWQQQQHRHTTDTSETTTTATWLHDDLKESLFEKSLTPSDVGKLNR 60

Query: 61  LVIPKQYAEKYFPL------SPGGDT--ADKGLLLSFEDESGKMWRFRYSYWNSSQSYVL 120
           LVIPKQ+AEKYFPL      S   DT  ++KG+LLSFEDESGK WRFRYSYWNSSQSYVL
Sbjct: 61  LVIPKQHAEKYFPLNAVLVSSAAADTSSSEKGMLLSFEDESGKSWRFRYSYWNSSQSYVL 120

Query: 121 TKGWTRFVKEKRLDAGDVVVFERHRRDGDRLFIGWKRRSPVSTAETAAA-TRIFCSSNPY 180
           TKGW+RFVK+K+LD GDVV F+RHR D  RLFIGW+RR   S++  AA  + +  SS   
Sbjct: 121 TKGWSRFVKDKQLDPGDVVFFQRHRSDSRRLFIGWRRRGQGSSSSVAATNSAVNTSSMGA 180

Query: 181 PSHHHHHNHNHLPSPP----YQSYDCPHAESSVQSQTVS---VGNSKILRLFGVDLECQT 240
            S+H  H  ++  +PP    Y  Y    A ++    T S   VG+S+ +RLFGV+LECQ 
Sbjct: 181 LSYHQIHATSNYSNPPSHSEYSHYGAAVATAAETHSTPSSSVVGSSRTVRLFGVNLECQM 240

Query: 241 DVSEPEQ----PSTLGGGSGLSGQDPTRHSFYTH 245
           D ++ +      +T+    G  GQ+   + +Y+H
Sbjct: 241 DENDGDDSVAVATTVESPDGYYGQN--MYYYYSH 272

[Close]

BLAST of CmoCh06G005000.1 vs. ExPASy Swiss-Prot
Match: Q8GYJ2 (B3 domain-containing protein At2g36080 OS=Arabidopsis thaliana OX=3702 GN=ARF31 PE=2 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 2.1e-52
Identity = 126/233 (54.08%), Postives = 149/233 (63.95%), Query Frame = 0


Query: 1   MSLNHFSSDCHLHHP--KSSASAVDHHLIHHHHKHPMFEKPLTPSDVGKLNRLVIPKQYA 60
           MS+N +SSD H H    +       H       K  +FEKPLTPSDVGKLNRLVIPKQ+A
Sbjct: 1   MSINQYSSDFHYHSLMWQQQQQQQQHQNDVVEEKEALFEKPLTPSDVGKLNRLVIPKQHA 60

Query: 61  EKYFPL-SPGGDTADKGLLLSFEDESGKMWRFRYSYWNSSQSYVLTKGWTRFVKEKRLDA 120
           E+YFPL +   D  +KGLLL FEDE GK WRFRYSYWNSSQSYVLTKGW+R+VKEK LDA
Sbjct: 61  ERYFPLAAAAADAVEKGLLLCFEDEEGKPWRFRYSYWNSSQSYVLTKGWSRYVKEKHLDA 120

Query: 121 GDVVVFERHRRDGDRLFIGWKRRSPVSTAETAAATRIFCSSNPYPSHHHHHNHNHLPSPP 180
           GDVV+F RHR DG R FIGW+RR                SS+   S+ H  ++  L    
Sbjct: 121 GDVVLFHRHRSDGGRFFIGWRRRGD--------------SSSSSDSYRHVQSNASL---- 180

Query: 181 YQSYDCPHA-ESSVQSQTVSVGNSKILRLFGVDLECQTDVSEPEQPSTLGGGS 230
            Q Y  PHA   +V+SQ    GNSK LRLFGV++ECQ D S+  +PST  G +
Sbjct: 181 -QYY--PHAGAQAVESQR---GNSKTLRLFGVNMECQLD-SDWSEPSTPDGSN 208

[Close]

BLAST of CmoCh06G005000.1 vs. ExPASy Swiss-Prot
Match: Q8RYD3 (B3 domain-containing protein At3g11580 OS=Arabidopsis thaliana OX=3702 GN=ARF32 PE=2 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 2.1e-49
Identity = 119/240 (49.58%), Postives = 148/240 (61.67%), Query Frame = 0


Query: 1   MSLNHFSSDCHLHHPKSSASAVDHHLIHHHHKHPMFEKPLTPSDVGKLNRLVIPKQYAEK 60
           MS+NH+ +   LHH   +  A+         +  +FEK LTPSDVGKLNRLVIPKQ+AEK
Sbjct: 1   MSVNHYHNTLSLHHHHQNDVAI-------AQRESLFEKSLTPSDVGKLNRLVIPKQHAEK 60

Query: 61  YFPLS-------PGGD--TADKGLLLSFEDESGKMWRFRYSYWNSSQSYVLTKGWTRFVK 120
           YFPL+        G D  T +KG+LLSFEDESGK W+FRYSYWNSSQSYVLTKGW+R+VK
Sbjct: 61  YFPLNNNNNNGGSGDDVATTEKGMLLSFEDESGKCWKFRYSYWNSSQSYVLTKGWSRYVK 120

Query: 121 EKRLDAGDVVVFERHRRDGDRLFIGWKRRSPVSTA--------ETAAATRIFCS--SNPY 180
           +K LDAGDVV F+RHR D  RLFIGW+RR   S++        E    T  + S  + PY
Sbjct: 121 DKHLDAGDVVFFQRHRFDLHRLFIGWRRRGEASSSPAVSVVSQEALVNTTAYWSGLTTPY 180

Query: 181 PSHHHHHNHNHLPSPPYQSYDC--PHAESSVQSQTVSVGNSKILRLFGVDLECQTDVSEP 220
              H    + ++    Y  Y     HA+S      V  G+S+ +RLFGV+LEC  D  EP
Sbjct: 181 RQVHASTTYPNI-HQEYSHYGAVVDHAQS---IPPVVAGSSRTVRLFGVNLECHGDAVEP 229

[Close]

BLAST of CmoCh06G005000.1 vs. ExPASy Swiss-Prot
Match: Q53QI0 (B3 domain-containing protein Os11g0156000 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0156000 PE=2 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 2.8e-49
Identity = 129/255 (50.59%), Postives = 156/255 (61.18%), Query Frame = 0


Query: 1   MSLNH--FSSDCHLHHPKSSASAVDHHLIHHHHKHPMFEKPLTPSDVGKLNRLVIPKQYA 60
           M++NH  FS +     P   A   + H  HH+ K  MFEKPLTPSDVGKLNRLVIPKQ+A
Sbjct: 1   MAMNHPLFSQEQPQSWPWGVAMYANFHYHHHYEKEHMFEKPLTPSDVGKLNRLVIPKQHA 60

Query: 61  EKYFPLSPGGDTADKGLLLSFEDESGKMWRFRYSYWNSSQSYVLTKGWTRFVKEKRLDAG 120
           E+YFPL   GD ADKGL+LSFEDE+G  WRFRYSYW SSQSYVLTKGW+R+VKEKRLDAG
Sbjct: 61  ERYFPLG-AGDAADKGLILSFEDEAGAPWRFRYSYWTSSQSYVLTKGWSRYVKEKRLDAG 120

Query: 121 DVVVFERHRRD---GDRLFIGWKRRSPVSTAETAA---ATRIFCSS------NPY-PSHH 180
           DVV FER R     GDRLFIG +RR   + A+T A   A R+  ++       P+ P  +
Sbjct: 121 DVVHFERVRGSFGVGDRLFIGCRRRGDAAAAQTPAPPPAVRVAPAAQNAGEQQPWSPMCY 180

Query: 181 HHHNHNHLPSPPYQSY-----------DCPHAESS---VQSQTVSVGN--SKILRLFGVD 225
                   P+ P  SY           D  HA+ S     S + S G+  S+ LRLFGV+
Sbjct: 181 STSGGGSYPTSPANSYAYRRAADHDHGDMHHADESPRDTDSPSFSAGSAPSRRLRLFGVN 240

[Close]

BLAST of CmoCh06G005000.1 vs. ExPASy Swiss-Prot
Match: Q9M268 (B3 domain-containing transcription factor NGA2 OS=Arabidopsis thaliana OX=3702 GN=NGA2 PE=2 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 8.2e-41
Identity = 103/223 (46.19%), Postives = 139/223 (62.33%), Query Frame = 0


Query: 35  MFEKPLTPSDVGKLNRLVIPKQYAEKYFPL-SPGGDTADKGLLLSFEDESGKMWRFRYSY 94
           MF+K +TPSDVGKLNRLVIPKQ+AE+YFPL +   + ++KGLLL+FED SG  WRFRYSY
Sbjct: 22  MFDKVVTPSDVGKLNRLVIPKQHAERYFPLDNSTTNDSNKGLLLNFEDRSGNSWRFRYSY 81

Query: 95  WNSSQSYVLTKGWTRFVKEKRLDAGDVVVFERHRRDGDRLFIGWKRRSPV-----STAET 154
           WNSSQSYV+TKGW+RFVK+K+LDAGD+V F+R   + D+L+I W+RR  +          
Sbjct: 82  WNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRDSCNKDKLYIDWRRRPKIPDHHHQQFAG 141

Query: 155 AAATRIFCSSNP-YPSHHHHHNHNH------LPSPPY-QSYDCPHAESSVQS-------- 214
           A   R +   +P  P+++  HN  H      L    Y +S +  H  + ++S        
Sbjct: 142 AMFPRFYTFPHPQMPTNYETHNLYHRFHQRDLGIGYYVRSMERSHPTAVIESVPVMMQRR 201

Query: 215 -QTVSVGN--SKILRLFGVDLEC---QTDVSEPEQPSTLGGGS 230
            Q  S+ +   K LRLFGVD+EC      V+  E+ S+  GGS
Sbjct: 202 AQVASMASRGEKRLRLFGVDMECGGGGGSVNSTEEESSSSGGS 244

[Close]

BLAST of CmoCh06G005000.1 vs. ExPASy TrEMBL
Match: A0A6J1FHX6 (B3 domain-containing protein At5g06250-like OS=Cucurbita moschata OX=3662 GN=LOC111444287 PE=4 SV=1)

HSP 1 Score: 512.7 bits (1319), Expect = 8.5e-142
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 0


Query: 1   MSLNHFSSDCHLHHPKSSASAVDHHLIHHHHKHPMFEKPLTPSDVGKLNRLVIPKQYAEK 60
           MSLNHFSSDCHLHHPKSSASAVDHHLIHHHHKHPMFEKPLTPSDVGKLNRLVIPKQYAEK
Sbjct: 1   MSLNHFSSDCHLHHPKSSASAVDHHLIHHHHKHPMFEKPLTPSDVGKLNRLVIPKQYAEK 60

Query: 61  YFPLSPGGDTADKGLLLSFEDESGKMWRFRYSYWNSSQSYVLTKGWTRFVKEKRLDAGDV 120
           YFPLSPGGDTADKGLLLSFEDESGKMWRFRYSYWNSSQSYVLTKGWTRFVKEKRLDAGDV
Sbjct: 61  YFPLSPGGDTADKGLLLSFEDESGKMWRFRYSYWNSSQSYVLTKGWTRFVKEKRLDAGDV 120

Query: 121 VVFERHRRDGDRLFIGWKRRSPVSTAETAAATRIFCSSNPYPSHHHHHNHNHLPSPPYQS 180
           VVFERHRRDGDRLFIGWKRRSPVSTAETAAATRIFCSSNPYPSHHHHHNHNHLPSPPYQS
Sbjct: 121 VVFERHRRDGDRLFIGWKRRSPVSTAETAAATRIFCSSNPYPSHHHHHNHNHLPSPPYQS 180

Query: 181 YDCPHAESSVQSQTVSVGNSKILRLFGVDLECQTDVSEPEQPSTLGGGSGLSGQDPTRHS 240
           YDCPHAESSVQSQTVSVGNSKILRLFGVDLECQTDVSEPEQPSTLGGGSGLSGQDPTRHS
Sbjct: 181 YDCPHAESSVQSQTVSVGNSKILRLFGVDLECQTDVSEPEQPSTLGGGSGLSGQDPTRHS 240

Query: 241 FYTH 245
           FYTH
Sbjct: 241 FYTH 244

[Close]

BLAST of CmoCh06G005000.1 vs. ExPASy TrEMBL
Match: A0A6J1L1C4 (B3 domain-containing protein At5g06250-like OS=Cucurbita maxima OX=3661 GN=LOC111498261 PE=4 SV=1)

HSP 1 Score: 491.9 bits (1265), Expect = 1.6e-135
Identity = 237/244 (97.13%), Postives = 239/244 (97.95%), Query Frame = 0


Query: 1   MSLNHFSSDCHLHHPKSSASAVDHHLIHHHHKHPMFEKPLTPSDVGKLNRLVIPKQYAEK 60
           MSLNHFSSDCHLHHPKSSASAVDHHLIHHHHKHPMFEKPLTPSDVGKLNRLVIPKQYAEK
Sbjct: 1   MSLNHFSSDCHLHHPKSSASAVDHHLIHHHHKHPMFEKPLTPSDVGKLNRLVIPKQYAEK 60

Query: 61  YFPLSPGGDTADKGLLLSFEDESGKMWRFRYSYWNSSQSYVLTKGWTRFVKEKRLDAGDV 120
           YFPLSPGGDTADKGLLLSFEDESGKMWRFRYSYWNSSQSYVLTKGWTRFVKEKRLDAGDV
Sbjct: 61  YFPLSPGGDTADKGLLLSFEDESGKMWRFRYSYWNSSQSYVLTKGWTRFVKEKRLDAGDV 120

Query: 121 VVFERHRRDGDRLFIGWKRRSPVSTAETAAATRIFCSSNPYPSHHHHHNHNHLPSPPYQS 180
           VVFERHRRDGDRLFIGWKRRSPVSTAETAAATRIFCSSNPYPSHHH   HNHLPSPPYQS
Sbjct: 121 VVFERHRRDGDRLFIGWKRRSPVSTAETAAATRIFCSSNPYPSHHH---HNHLPSPPYQS 180

Query: 181 YDCPHAESSVQSQTVSVGNSKILRLFGVDLECQTDVSEPEQPSTLGGGSGLSGQDPTRHS 240
            DCP AESSVQSQTVSVGNSKI+RLFGVDLECQTDVSEPEQPST+GGGSGLSGQDPTRHS
Sbjct: 181 SDCPRAESSVQSQTVSVGNSKIVRLFGVDLECQTDVSEPEQPSTIGGGSGLSGQDPTRHS 240

Query: 241 FYTH 245
           FYTH
Sbjct: 241 FYTH 241

[Close]

BLAST of CmoCh06G005000.1 vs. ExPASy TrEMBL
Match: A0A1S3B6T3 (B3 domain-containing protein At2g36080-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486642 PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 1.1e-93
Identity = 195/283 (68.90%), Postives = 210/283 (74.20%), Query Frame = 0


Query: 1   MSLNHFSSDCH-----------LHHPKSSAS---AVDHHLIHHHHKHPMFEKPLTPSDVG 60
           MS+N+FS D H           + +PKSS S     DH         PMFEKPLTPSDVG
Sbjct: 1   MSINNFSPDFHQPLFSTSQLPIMLNPKSSLSLAVTADH--------LPMFEKPLTPSDVG 60

Query: 61  KLNRLVIPKQYAEKYFPLSP----------GGDTADKGLLLSFEDESGKMWRFRYSYWNS 120
           KLNRLVIPKQYAEKYFPLSP           GD+ADKGLLLSFEDESGK+WRFRYSYWNS
Sbjct: 61  KLNRLVIPKQYAEKYFPLSPSAAVATAAAAAGDSADKGLLLSFEDESGKIWRFRYSYWNS 120

Query: 121 SQSYVLTKGWTRFVKEKRLDAGDVVVFERHRRDGDRLFIGWKRRSPVSTAETAAA----- 180
           SQSYVLTKGW+RFVKEKRLDAGDVVVFERHRRDGDRLFIGWKRRS  S A++A A     
Sbjct: 121 SQSYVLTKGWSRFVKEKRLDAGDVVVFERHRRDGDRLFIGWKRRSAPSPADSAVATGSGG 180

Query: 181 -------TRIFCSSNPYPSHHHHHNHNHLPSPPYQ-SYDCPHAESSVQSQTVSVGNSKIL 240
                  TR+FCS+N YPS   HH H HLPSPPYQ S D PHAESSVQSQTVS+GNSKIL
Sbjct: 181 VGGGGGWTRMFCSANSYPS---HHQHRHLPSPPYQSSSDTPHAESSVQSQTVSIGNSKIL 240

Query: 241 RLFGVDLECQTDVSEPEQPSTLGGGS--GLSGQDPTRHSFYTH 245
           RLFGVDLECQTD+SEPE PS L  GS   LSG+DPTRH+FY H
Sbjct: 241 RLFGVDLECQTDMSEPEPPSLLNVGSSLSLSGRDPTRHTFYPH 272

[Close]

BLAST of CmoCh06G005000.1 vs. ExPASy TrEMBL
Match: A0A1S3B7G9 (B3 domain-containing protein At2g36080-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486642 PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 1.1e-93
Identity = 195/283 (68.90%), Postives = 210/283 (74.20%), Query Frame = 0


Query: 1   MSLNHFSSDCH-----------LHHPKSSAS---AVDHHLIHHHHKHPMFEKPLTPSDVG 60
           MS+N+FS D H           + +PKSS S     DH         PMFEKPLTPSDVG
Sbjct: 1   MSINNFSPDFHQPLFSTSQLPIMLNPKSSLSLAVTADH--------LPMFEKPLTPSDVG 60

Query: 61  KLNRLVIPKQYAEKYFPLSP----------GGDTADKGLLLSFEDESGKMWRFRYSYWNS 120
           KLNRLVIPKQYAEKYFPLSP           GD+ADKGLLLSFEDESGK+WRFRYSYWNS
Sbjct: 61  KLNRLVIPKQYAEKYFPLSPSAAVATAAAAAGDSADKGLLLSFEDESGKIWRFRYSYWNS 120

Query: 121 SQSYVLTKGWTRFVKEKRLDAGDVVVFERHRRDGDRLFIGWKRRSPVSTAETAAA----- 180
           SQSYVLTKGW+RFVKEKRLDAGDVVVFERHRRDGDRLFIGWKRRS  S A++A A     
Sbjct: 121 SQSYVLTKGWSRFVKEKRLDAGDVVVFERHRRDGDRLFIGWKRRSAPSPADSAVATGSGG 180

Query: 181 -------TRIFCSSNPYPSHHHHHNHNHLPSPPYQ-SYDCPHAESSVQSQTVSVGNSKIL 240
                  TR+FCS+N YPS   HH H HLPSPPYQ S D PHAESSVQSQTVS+GNSKIL
Sbjct: 181 VGGGGGWTRMFCSANSYPS---HHQHRHLPSPPYQSSSDTPHAESSVQSQTVSIGNSKIL 240

Query: 241 RLFGVDLECQTDVSEPEQPSTLGGGS--GLSGQDPTRHSFYTH 245
           RLFGVDLECQTD+SEPE PS L  GS   LSG+DPTRH+FY H
Sbjct: 241 RLFGVDLECQTDMSEPEPPSLLNVGSSLSLSGRDPTRHTFYPH 272

[Close]

BLAST of CmoCh06G005000.1 vs. ExPASy TrEMBL
Match: A0A6J1IY80 (B3 domain-containing protein At2g36080-like OS=Cucurbita maxima OX=3661 GN=LOC111481716 PE=4 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 1.2e-90
Identity = 186/274 (67.88%), Postives = 202/274 (73.72%), Query Frame = 0


Query: 1   MSLNHFSSDCH-------------LHHPKSSASAVDHHLIHHHHKHPMFEKPLTPSDVGK 60
           MS+NHFS D H              ++PKSS S         + K PMFEKPLTPSDVGK
Sbjct: 1   MSINHFSQDFHQPLFSSPHLPIMLSNNPKSSLS--------DNLKQPMFEKPLTPSDVGK 60

Query: 61  LNRLVIPKQYAEKYFPLSPGGD--------TADKGLLLSFEDESGKMWRFRYSYWNSSQS 120
           LNRLVIPKQYAE+YFPLSP           +ADK LLL+FEDESGK+WRFRYSYWNSSQS
Sbjct: 61  LNRLVIPKQYAERYFPLSPSSSAAAAATAHSADKALLLTFEDESGKLWRFRYSYWNSSQS 120

Query: 121 YVLTKGWTRFVKEKRLDAGDVVVFERHRRDGDRLFIGWKRRSPVSTAETAAA-------- 180
           YVLTKGW+RFVKEKRLDAGD VVFERHR DGDRLFIGWKRRS  S AETA A        
Sbjct: 121 YVLTKGWSRFVKEKRLDAGDCVVFERHRSDGDRLFIGWKRRSAPSPAETAVAPSGSGGGC 180

Query: 181 -TRIFCSSNPYPSHHHHHNHNHLPSPPYQSYDCPHAESSVQSQTVSVGNSKILRLFGVDL 240
            TR+F S+NPYPSHH      HLPSPPYQS      ESSVQSQTVSVGNSKILRLFGVDL
Sbjct: 181 WTRMFYSANPYPSHH------HLPSPPYQSSGSTLQESSVQSQTVSVGNSKILRLFGVDL 240

Query: 241 ECQTDVSEPEQPSTLGGGSGLSGQDPTRHSFYTH 245
           ECQTD+SEPE PST+GG S +SG+DPTRH FY+H
Sbjct: 241 ECQTDMSEPEPPSTVGGVSSMSGRDPTRHIFYSH 260

[Close]

BLAST of CmoCh06G005000.1 vs. TAIR 10
Match: AT5G06250.2 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 213.0 bits (541), Expect = 2.7e-55
Identity = 131/274 (47.81%), Postives = 170/274 (62.04%), Query Frame = 0


Query: 1   MSLNHFSSD----------CHLHHPKSSASAVDHHLIHHHHKHPMFEKPLTPSDVGKLNR 60
           MS+NH+S+D           H H   +S +      +H   K  +FEK LTPSDVGKLNR
Sbjct: 1   MSVNHYSTDHHHTLLWQQQQHRHTTDTSETTTTATWLHDDLKESLFEKSLTPSDVGKLNR 60

Query: 61  LVIPKQYAEKYFPL------SPGGDT--ADKGLLLSFEDESGKMWRFRYSYWNSSQSYVL 120
           LVIPKQ+AEKYFPL      S   DT  ++KG+LLSFEDESGK WRFRYSYWNSSQSYVL
Sbjct: 61  LVIPKQHAEKYFPLNAVLVSSAAADTSSSEKGMLLSFEDESGKSWRFRYSYWNSSQSYVL 120

Query: 121 TKGWTRFVKEKRLDAGDVVVFERHRRDGDRLFIGWKRRSPVSTAETAAA-TRIFCSSNPY 180
           TKGW+RFVK+K+LD GDVV F+RHR D  RLFIGW+RR   S++  AA  + +  SS   
Sbjct: 121 TKGWSRFVKDKQLDPGDVVFFQRHRSDSRRLFIGWRRRGQGSSSSVAATNSAVNTSSMGA 180

Query: 181 PSHHHHHNHNHLPSPP----YQSYDCPHAESSVQSQTVS---VGNSKILRLFGVDLECQT 240
            S+H  H  ++  +PP    Y  Y    A ++    T S   VG+S+ +RLFGV+LECQ 
Sbjct: 181 LSYHQIHATSNYSNPPSHSEYSHYGAAVATAAETHSTPSSSVVGSSRTVRLFGVNLECQM 240

Query: 241 DVSEPEQ----PSTLGGGSGLSGQDPTRHSFYTH 245
           D ++ +      +T+    G  GQ+   + +Y+H
Sbjct: 241 DENDGDDSVAVATTVESPDGYYGQN--MYYYYSH 272

[Close]

BLAST of CmoCh06G005000.1 vs. TAIR 10
Match: AT2G36080.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 207.2 bits (526), Expect = 1.5e-53
Identity = 126/233 (54.08%), Postives = 149/233 (63.95%), Query Frame = 0


Query: 1   MSLNHFSSDCHLHHP--KSSASAVDHHLIHHHHKHPMFEKPLTPSDVGKLNRLVIPKQYA 60
           MS+N +SSD H H    +       H       K  +FEKPLTPSDVGKLNRLVIPKQ+A
Sbjct: 1   MSINQYSSDFHYHSLMWQQQQQQQQHQNDVVEEKEALFEKPLTPSDVGKLNRLVIPKQHA 60

Query: 61  EKYFPL-SPGGDTADKGLLLSFEDESGKMWRFRYSYWNSSQSYVLTKGWTRFVKEKRLDA 120
           E+YFPL +   D  +KGLLL FEDE GK WRFRYSYWNSSQSYVLTKGW+R+VKEK LDA
Sbjct: 61  ERYFPLAAAAADAVEKGLLLCFEDEEGKPWRFRYSYWNSSQSYVLTKGWSRYVKEKHLDA 120

Query: 121 GDVVVFERHRRDGDRLFIGWKRRSPVSTAETAAATRIFCSSNPYPSHHHHHNHNHLPSPP 180
           GDVV+F RHR DG R FIGW+RR                SS+   S+ H  ++  L    
Sbjct: 121 GDVVLFHRHRSDGGRFFIGWRRRGD--------------SSSSSDSYRHVQSNASL---- 180

Query: 181 YQSYDCPHA-ESSVQSQTVSVGNSKILRLFGVDLECQTDVSEPEQPSTLGGGS 230
            Q Y  PHA   +V+SQ    GNSK LRLFGV++ECQ D S+  +PST  G +
Sbjct: 181 -QYY--PHAGAQAVESQR---GNSKTLRLFGVNMECQLD-SDWSEPSTPDGSN 208

[Close]

BLAST of CmoCh06G005000.1 vs. TAIR 10
Match: AT5G06250.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 206.8 bits (525), Expect = 1.9e-53
Identity = 128/267 (47.94%), Postives = 166/267 (62.17%), Query Frame = 0


Query: 1   MSLNHFSSD----------CHLHHPKSSASAVDHHLIHHHHKHPMFEKPLTPSDVGKLNR 60
           MS+NH+S+D           H H   +S +      +H   K  +FEK LTPSDVGKLNR
Sbjct: 1   MSVNHYSTDHHHTLLWQQQQHRHTTDTSETTTTATWLHDDLKESLFEKSLTPSDVGKLNR 60

Query: 61  LVIPKQYAEKYFPL------SPGGDT--ADKGLLLSFEDESGKMWRFRYSYWNSSQSYVL 120
           LVIPKQ+AEKYFPL      S   DT  ++KG+LLSFEDESGK WRFRYSYWNSSQSYVL
Sbjct: 61  LVIPKQHAEKYFPLNAVLVSSAAADTSSSEKGMLLSFEDESGKSWRFRYSYWNSSQSYVL 120

Query: 121 TKGWTRFVKEKRLDAGDVVVFERHRRDGDRLFIGWKRRSPVSTAETAAA-TRIFCSSNPY 180
           TKGW+RFVK+K+LD GDVV F+RHR D  RLFIGW+RR   S++  AA  + +  SS   
Sbjct: 121 TKGWSRFVKDKQLDPGDVVFFQRHRSDSRRLFIGWRRRGQGSSSSVAATNSAVNTSSMGA 180

Query: 181 PSHHHHHNHNHLPSPPYQSYDCPHAESSVQSQTVSVGNSKILRLFGVDLECQTDVSEPEQ 240
            S+H  H      +   +++  P   SSV      VG+S+ +RLFGV+LECQ D ++ + 
Sbjct: 181 LSYHQIHATRAAVATAAETHSTP--SSSV------VGSSRTVRLFGVNLECQMDENDGDD 240

Query: 241 ----PSTLGGGSGLSGQDPTRHSFYTH 245
                +T+    G  GQ+   + +Y+H
Sbjct: 241 SVAVATTVESPDGYYGQN--MYYYYSH 257

[Close]

BLAST of CmoCh06G005000.1 vs. TAIR 10
Match: AT3G11580.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 197.2 bits (500), Expect = 1.5e-50
Identity = 119/240 (49.58%), Postives = 148/240 (61.67%), Query Frame = 0


Query: 1   MSLNHFSSDCHLHHPKSSASAVDHHLIHHHHKHPMFEKPLTPSDVGKLNRLVIPKQYAEK 60
           MS+NH+ +   LHH   +  A+         +  +FEK LTPSDVGKLNRLVIPKQ+AEK
Sbjct: 1   MSVNHYHNTLSLHHHHQNDVAI-------AQRESLFEKSLTPSDVGKLNRLVIPKQHAEK 60

Query: 61  YFPLS-------PGGD--TADKGLLLSFEDESGKMWRFRYSYWNSSQSYVLTKGWTRFVK 120
           YFPL+        G D  T +KG+LLSFEDESGK W+FRYSYWNSSQSYVLTKGW+R+VK
Sbjct: 61  YFPLNNNNNNGGSGDDVATTEKGMLLSFEDESGKCWKFRYSYWNSSQSYVLTKGWSRYVK 120

Query: 121 EKRLDAGDVVVFERHRRDGDRLFIGWKRRSPVSTA--------ETAAATRIFCS--SNPY 180
           +K LDAGDVV F+RHR D  RLFIGW+RR   S++        E    T  + S  + PY
Sbjct: 121 DKHLDAGDVVFFQRHRFDLHRLFIGWRRRGEASSSPAVSVVSQEALVNTTAYWSGLTTPY 180

Query: 181 PSHHHHHNHNHLPSPPYQSYDC--PHAESSVQSQTVSVGNSKILRLFGVDLECQTDVSEP 220
              H    + ++    Y  Y     HA+S      V  G+S+ +RLFGV+LEC  D  EP
Sbjct: 181 RQVHASTTYPNI-HQEYSHYGAVVDHAQS---IPPVVAGSSRTVRLFGVNLECHGDAVEP 229

[Close]

BLAST of CmoCh06G005000.1 vs. TAIR 10
Match: AT2G36080.2 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 189.1 bits (479), Expect = 4.1e-48
Identity = 95/149 (63.76%), Postives = 109/149 (73.15%), Query Frame = 0


Query: 1   MSLNHFSSDCHLHHP--KSSASAVDHHLIHHHHKHPMFEKPLTPSDVGKLNRLVIPKQYA 60
           MS+N +SSD H H    +       H       K  +FEKPLTPSDVGKLNRLVIPKQ+A
Sbjct: 1   MSINQYSSDFHYHSLMWQQQQQQQQHQNDVVEEKEALFEKPLTPSDVGKLNRLVIPKQHA 60

Query: 61  EKYFPL-SPGGDTADKGLLLSFEDESGKMWRFRYSYWNSSQSYVLTKGWTRFVKEKRLDA 120
           E+YFPL +   D  +KGLLL FEDE GK WRFRYSYWNSSQSYVLTKGW+R+VKEK LDA
Sbjct: 61  ERYFPLAAAAADAVEKGLLLCFEDEEGKPWRFRYSYWNSSQSYVLTKGWSRYVKEKHLDA 120

Query: 121 GDVVVFERHRRDGDRLFIGWKRRSPVSTA 147
           GDVV+F RHR DG R FIGW+RR   S++
Sbjct: 121 GDVVLFHRHRSDGGRFFIGWRRRGDSSSS 149

The following BLAST results are available for this feature:

BLAST of CmoCh06G005000.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FNI3	3.8e-54	47.81	B3 domain-containing protein At5g06250 OS=Arabidopsis thaliana OX=3702 GN=At5g06...	[more]
Q8GYJ2	2.1e-52	54.08	B3 domain-containing protein At2g36080 OS=Arabidopsis thaliana OX=3702 GN=ARF31 ...	[more]
Q8RYD3	2.1e-49	49.58	B3 domain-containing protein At3g11580 OS=Arabidopsis thaliana OX=3702 GN=ARF32 ...	[more]
Q53QI0	2.8e-49	50.59	B3 domain-containing protein Os11g0156000 OS=Oryza sativa subsp. japonica OX=399...	[more]
Q9M268	8.2e-41	46.19	B3 domain-containing transcription factor NGA2 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of CmoCh06G005000.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FHX6	8.5e-142	100.00	B3 domain-containing protein At5g06250-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1L1C4	1.6e-135	97.13	B3 domain-containing protein At5g06250-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A1S3B6T3	1.1e-93	68.90	B3 domain-containing protein At2g36080-like isoform X1 OS=Cucumis melo OX=3656 G...	[more]
A0A1S3B7G9	1.1e-93	68.90	B3 domain-containing protein At2g36080-like isoform X2 OS=Cucumis melo OX=3656 G...	[more]
A0A6J1IY80	1.2e-90	67.88	B3 domain-containing protein At2g36080-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]

BLAST of CmoCh06G005000.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06250.2	2.7e-55	47.81	AP2/B3-like transcriptional factor family protein	[more]
AT2G36080.1	1.5e-53	54.08	AP2/B3-like transcriptional factor family protein	[more]
AT5G06250.1	1.9e-53	47.94	AP2/B3-like transcriptional factor family protein	[more]
AT3G11580.1	1.5e-50	49.58	AP2/B3-like transcriptional factor family protein	[more]
AT2G36080.2	4.1e-48	63.76	AP2/B3-like transcriptional factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003340	B3 DNA binding domain	SMART	SM01019	B3_2	coord: 36..141 e-value: 1.7E-28 score: 110.7
IPR003340	B3 DNA binding domain	PFAM	PF02362	B3	coord: 36..140 e-value: 7.9E-31 score: 105.9
IPR003340	B3 DNA binding domain	PROSITE	PS50863	B3	coord: 36..141 score: 15.481276
IPR003340	B3 DNA binding domain	CDD	cd10017	B3_DNA	coord: 34..130 e-value: 1.12238E-33 score: 115.503
IPR015300	DNA-binding pseudobarrel domain superfamily	GENE3D	2.40.330.10		coord: 27..151 e-value: 2.7E-47 score: 161.4
IPR015300	DNA-binding pseudobarrel domain superfamily	SUPERFAMILY	101936	DNA-binding pseudobarrel domain	coord: 31..141
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 216..244
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 165..186
None	No IPR available	PANTHER	PTHR31140:SF70	B3 DOMAIN-CONTAINING PROTEIN OS11G0156000	coord: 20..222
IPR044800	B3 domain-containing transcription factor LEC2-like	PANTHER	PTHR31140	B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3	coord: 20..222

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh06G005000	CmoCh06G005000	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G005000.1:exon:6717	CmoCh06G005000.1:exon:6717	exon
CmoCh06G005000.1:exon:6718	CmoCh06G005000.1:exon:6718	exon
CmoCh06G005000.1:exon:6719	CmoCh06G005000.1:exon:6719	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G005000.1:five_prime_utr	CmoCh06G005000.1:five_prime_utr	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G005000.1:cds	CmoCh06G005000.1:cds	CDS
CmoCh06G005000.1:cds	CmoCh06G005000.1:cds_2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G005000.1:three_prime_utr	CmoCh06G005000.1:three_prime_utr	three_prime_UTR
CmoCh06G005000.1:three_prime_utr	CmoCh06G005000.1:three_prime_utr_2	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh06G005000.1	CmoCh06G005000.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity