CmoCh06G004540.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G004540.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	ethylene-responsive transcription factor ERF024-like
Location	Cmo_Chr06: 2168177 .. 2168689 (+)
Sequence length	513
RNA-Seq Expression	CmoCh06G004540.1
Synteny	CmoCh06G004540.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACTTCCGGCCGCCACCCCATTTACCGAGGCGTACGACGCCGCAACACAGGCAAATGGGTGTCGGAAATTCGGGAGCCCCGGAAGCCAAATCGGATTTGGTTGGGAACCTTCCCGACAGCTGAAATGGCGGCTGTGGCTTATGACGTTGCTGCCCTTGCTCTCAAGGGCCACGACACTCACCTCAATTTCCCCAATTCTGCGTCCTCTCTCCCTGTTCCTGCTTCACGTTCACCCTCTGATATTCAGGCTGCAGCCGCCTCTGCCGCCGCTGCGCTTGGTGCCGCAGCAGCCGCCATCGAGGCAAGGAGTGGTTTTCACGGTGGCCGTAGTAATGATCCAGGGGAAGTGGGAAATCATTTCATGGACGAGGACTTGATTTTTGATATGCCTAATGTTCTAATGAATATGGCGGAAGGAATGCTTCTTAGCCCTCCCCGTTTCAATAATCATGGTGGCGATGACGACGGAGCCGATCATGGTACCGGAAACCTTTGGAATTTTTCCTAA

mRNA sequence

ATGGCTACTTCCGGCCGCCACCCCATTTACCGAGGCGTACGACGCCGCAACACAGGCAAATGGGTGTCGGAAATTCGGGAGCCCCGGAAGCCAAATCGGATTTGGTTGGGAACCTTCCCGACAGCTGAAATGGCGGCTGTGGCTTATGACGTTGCTGCCCTTGCTCTCAAGGGCCACGACACTCACCTCAATTTCCCCAATTCTGCGTCCTCTCTCCCTGTTCCTGCTTCACGTTCACCCTCTGATATTCAGGCTGCAGCCGCCTCTGCCGCCGCTGCGCTTGGTGCCGCAGCAGCCGCCATCGAGGCAAGGAGTGGTTTTCACGGTGGCCGTAGTAATGATCCAGGGGAAGTGGGAAATCATTTCATGGACGAGGACTTGATTTTTGATATGCCTAATGTTCTAATGAATATGGCGGAAGGAATGCTTCTTAGCCCTCCCCGTTTCAATAATCATGGTGGCGATGACGACGGAGCCGATCATGGTACCGGAAACCTTTGGAATTTTTCCTAA

Coding sequence (CDS)

ATGGCTACTTCCGGCCGCCACCCCATTTACCGAGGCGTACGACGCCGCAACACAGGCAAATGGGTGTCGGAAATTCGGGAGCCCCGGAAGCCAAATCGGATTTGGTTGGGAACCTTCCCGACAGCTGAAATGGCGGCTGTGGCTTATGACGTTGCTGCCCTTGCTCTCAAGGGCCACGACACTCACCTCAATTTCCCCAATTCTGCGTCCTCTCTCCCTGTTCCTGCTTCACGTTCACCCTCTGATATTCAGGCTGCAGCCGCCTCTGCCGCCGCTGCGCTTGGTGCCGCAGCAGCCGCCATCGAGGCAAGGAGTGGTTTTCACGGTGGCCGTAGTAATGATCCAGGGGAAGTGGGAAATCATTTCATGGACGAGGACTTGATTTTTGATATGCCTAATGTTCTAATGAATATGGCGGAAGGAATGCTTCTTAGCCCTCCCCGTTTCAATAATCATGGTGGCGATGACGACGGAGCCGATCATGGTACCGGAAACCTTTGGAATTTTTCCTAA

Protein sequence

MATSGRHPIYRGVRRRNTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALALKGHDTHLNFPNSASSLPVPASRSPSDIQAAAASAAAALGAAAAAIEARSGFHGGRSNDPGEVGNHFMDEDLIFDMPNVLMNMAEGMLLSPPRFNNHGGDDDGADHGTGNLWNFS

Homology

[Close]

BLAST of CmoCh06G004540.1 vs. ExPASy Swiss-Prot
Match: Q9SJR0 (Ethylene-responsive transcription factor ERF024 OS=Arabidopsis thaliana OX=3702 GN=ERF024 PE=2 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 9.7e-49
Identity = 116/174 (66.67%), Postives = 124/174 (71.26%), Query Frame = 0


Query: 5   GRHPIYRGVR-RRNTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALALKGHDTHL 64
           GRHP+YRGVR R+N+ KWVSEIREPRKPNRIWLGTF T EMAA+AYDVAALALKG    L
Sbjct: 10  GRHPLYRGVRQRKNSNKWVSEIREPRKPNRIWLGTFSTPEMAAIAYDVAALALKGSQAEL 69

Query: 65  NFPNSASSLPVPASRSPSDIQAAAASAAAALGAAAAAI------EARSGFHGGRSNDPGE 124
           NFPNS SSLP P S SP+DIQAAAASAAAA GAA  AI         SG     S+    
Sbjct: 70  NFPNSVSSLPAPTSMSPADIQAAAASAAAAFGAARDAIVMANNNSQTSGVACMNSSYDNT 129

Query: 125 VGNHFMDEDLIFDMPNVLMNMAEGMLLSPPR--FNNHGGDDDGADHGTGNLWNF 170
             N FMDEDL+FDMPNVLMNMAEGMLLSPPR    +   D DG   G   LWNF
Sbjct: 130 NMNGFMDEDLVFDMPNVLMNMAEGMLLSPPRPTVFDAAYDADGFPGGDDYLWNF 183

[Close]

BLAST of CmoCh06G004540.1 vs. ExPASy Swiss-Prot
Match: Q38Q39 (Ethylene-responsive transcription factor ERF027 OS=Arabidopsis thaliana OX=3702 GN=ERF027 PE=2 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 6.7e-34
Identity = 92/189 (48.68%), Postives = 118/189 (62.43%), Query Frame = 0


Query: 1   MATSG-----RHPIYRGVRRRNTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALA 60
           MA++G     + P+YRG+R R +GKWVSEIREPRK  RIWLGT+P AEMAA AYDVAA+A
Sbjct: 5   MASAGLGSRRKDPVYRGIRCR-SGKWVSEIREPRKTTRIWLGTYPMAEMAAAAYDVAAMA 64

Query: 61  LKGHDTHLNFPNSASSLPVPASRSPSDIQAAAASAAAALGAAAA-----AIEARSGFHGG 120
           LKG +  LNFP S  S PVP S S +DI+AAAA+AAA  G         A E +S     
Sbjct: 65  LKGREAVLNFPGSVGSYPVPESTSAADIRAAAAAAAAMKGCEEGEEEKKAKEKKSSSSKS 124

Query: 121 RS------NDPGE---VGNHFMDEDLIFDMPNVLMNMAEGMLLSPPRFNNHGGDDDGADH 170
           R+      ND G     G  FMDE+ + +MPN+L NMAEGM+++PP +      DD  ++
Sbjct: 125 RARECHVDNDVGSSSWCGTEFMDEEEVLNMPNLLANMAEGMMVAPPSWMGSRPSDDSPEN 184

[Close]

BLAST of CmoCh06G004540.1 vs. ExPASy Swiss-Prot
Match: Q9CAN9 (Ethylene-responsive transcription factor ERF026 OS=Arabidopsis thaliana OX=3702 GN=ERF026 PE=2 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 9.7e-33
Identity = 79/164 (48.17%), Postives = 110/164 (67.07%), Query Frame = 0


Query: 6   RHPIYRGVRRRNTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALALKGHDTHLNF 65
           ++P+YRG+R R +GKWVSEIREP+K  R+WLGT+PT EMAA AYDVAALALKG DT LNF
Sbjct: 86  KNPVYRGIRCR-SGKWVSEIREPKKTTRVWLGTYPTPEMAAAAYDVAALALKGGDTLLNF 145

Query: 66  PNSASSLPVPASRSPSDIQAAAASAAAALGAAAAAIEARSGFHGGRSNDPGEVGNHFMDE 125
           P+S  S P+P S S + I+ AAA+AAA  GAA AA++          +        F+DE
Sbjct: 146 PDSLGSYPIPLSSSAAHIRCAAAAAAATRGAAGAAVKVGQKKEDKVYDTAESSTMGFVDE 205

Query: 126 DLIFDMPNVLMNMAEGMLLSPPRFNNHGGDDDGADHGTGNLWNF 170
           + + +MP +L +MA+GM+++PP   +   DD   +    +LW++
Sbjct: 206 EELLNMPGLLADMAKGMMVAPPWMGSPPSDDSPENSDGESLWSY 248

[Close]

BLAST of CmoCh06G004540.1 vs. ExPASy Swiss-Prot
Match: Q9FJ93 (Dehydration-responsive element-binding protein 1D OS=Arabidopsis thaliana OX=3702 GN=DREB1D PE=2 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 4.8e-32
Identity = 86/175 (49.14%), Postives = 106/175 (60.57%), Query Frame = 0


Query: 6   RHPIYRGVRRRNTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALALKGHDTHLNF 65
           RHPIYRGVR+RN+GKWV E+REP K +RIWLGTFPT EMAA A+DVAALAL+G    LNF
Sbjct: 50  RHPIYRGVRQRNSGKWVCEVREPNKKSRIWLGTFPTVEMAARAHDVAALALRGRSACLNF 109

Query: 66  PNSASSLPVPASRSPSDIQAAAASAAAAL--------GAAAAAIEARSG---FHGGRSND 125
            +SA  L +P +  P +IQ AA+ AA A            AA  E  +G     G R  +
Sbjct: 110 ADSAWRLRIPETTCPKEIQKAASEAAMAFQNETTTEGSKTAAEAEEAAGEGVREGERRAE 169

Query: 126 PGEVGNHFMDEDLIFDMPNVLMNMAEGMLLSPPRFNNHGGDDDGADHGTGNLWNF 170
               G  +MD++ +  MPN   NMAEGMLL PP    +  D DG   G  +LW+F
Sbjct: 170 EQNGGVFYMDDEALLGMPNFFENMAEGMLLPPPEVGWNHNDFDGV--GDVSLWSF 222

[Close]

BLAST of CmoCh06G004540.1 vs. ExPASy Swiss-Prot
Match: Q9FJ90 (Ethylene-responsive transcription factor ERF025 OS=Arabidopsis thaliana OX=3702 GN=ERF025 PE=2 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.1e-31
Identity = 87/174 (50.00%), Postives = 106/174 (60.92%), Query Frame = 0


Query: 4   SGRHPIYRGVRRRNTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALALKGHDTHL 63
           SG+H I+RG+R RN GKWVSEIREPRK  RIWLGT+P  EMAA AYDVAALALKG D  L
Sbjct: 59  SGKHSIFRGIRLRN-GKWVSEIREPRKTTRIWLGTYPVPEMAAAAYDVAALALKGPDAVL 118

Query: 64  NFPNSASSLPVPASRSPSDIQAAAASAAAALGAAAAAIE-ARSGFHGGRSNDPGEVGNH- 123
           NFP  A +   P S S +DI+AAA+ AA          E        G+  +  EV  + 
Sbjct: 119 NFPGLALTYVAPVSNSAADIRAAASRAAEMKQPDQGGDEKVLEPVQPGKEEELEEVSCNS 178

Query: 124 ----FMDEDLIFDMPNVLMNMAEGMLLSPPRFNNHG--GDDDGADHGTGNLWNF 170
               FMDE+ + +MP +L  MAEGML+SPPR   H    DD   +H   NLW++
Sbjct: 179 CSLEFMDEEAMLNMPTLLTEMAEGMLMSPPRMMIHPTMEDDSPENHEGDNLWSY 231

[Close]

BLAST of CmoCh06G004540.1 vs. ExPASy TrEMBL
Match: A0A6J1G3I4 (ethylene-responsive transcription factor ERF024-like OS=Cucurbita moschata OX=3662 GN=LOC111450440 PE=4 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 1.5e-89
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 1   MATSGRHPIYRGVRRRNTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALALKGHD 60
           MATSGRHPIYRGVRRRNTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALALKGHD
Sbjct: 1   MATSGRHPIYRGVRRRNTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALALKGHD 60

Query: 61  THLNFPNSASSLPVPASRSPSDIQAAAASAAAALGAAAAAIEARSGFHGGRSNDPGEVGN 120
           THLNFPNSASSLPVPASRSPSDIQAAAASAAAALGAAAAAIEARSGFHGGRSNDPGEVGN
Sbjct: 61  THLNFPNSASSLPVPASRSPSDIQAAAASAAAALGAAAAAIEARSGFHGGRSNDPGEVGN 120

Query: 121 HFMDEDLIFDMPNVLMNMAEGMLLSPPRFNNHGGDDDGADHGTGNLWNFS 171
           HFMDEDLIFDMPNVLMNMAEGMLLSPPRFNNHGGDDDGADHGTGNLWNFS
Sbjct: 121 HFMDEDLIFDMPNVLMNMAEGMLLSPPRFNNHGGDDDGADHGTGNLWNFS 170

[Close]

BLAST of CmoCh06G004540.1 vs. ExPASy TrEMBL
Match: A0A6J1L0H2 (ethylene-responsive transcription factor ERF024-like OS=Cucurbita maxima OX=3661 GN=LOC111498736 PE=4 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 6.4e-88
Identity = 166/169 (98.22%), Postives = 168/169 (99.41%), Query Frame = 0


Query: 1   MATSGRHPIYRGVRRRNTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALALKGHD 60
           MATSGRHP+YRGVRRRNTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALALKGHD
Sbjct: 1   MATSGRHPVYRGVRRRNTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALALKGHD 60

Query: 61  THLNFPNSASSLPVPASRSPSDIQAAAASAAAALGAAAAAIEARSGFHGGRSNDPGEVGN 120
           THLNFPNSASSLPVPASRSPSDIQAAAASAAAALGAAAAAIEARSGFHGGRSNDPGEV N
Sbjct: 61  THLNFPNSASSLPVPASRSPSDIQAAAASAAAALGAAAAAIEARSGFHGGRSNDPGEVRN 120

Query: 121 HFMDEDLIFDMPNVLMNMAEGMLLSPPRFNNHGGDDDGADHGTGNLWNF 170
           HFMDEDLIFDMPN+LMNMAEGMLLSPPRFNNHGGDDDGADHGTGNLWNF
Sbjct: 121 HFMDEDLIFDMPNILMNMAEGMLLSPPRFNNHGGDDDGADHGTGNLWNF 169

[Close]

BLAST of CmoCh06G004540.1 vs. ExPASy TrEMBL
Match: A0A0A0LBA2 (AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G751430 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 4.8e-67
Identity = 143/181 (79.01%), Postives = 152/181 (83.98%), Query Frame = 0


Query: 2   ATSGRHPIYRGVRRRNTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALALKGHDT 61
           ++SGRHP+YRGVRRRNTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALALKG D 
Sbjct: 3   SSSGRHPVYRGVRRRNTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALALKGQDA 62

Query: 62  HLNFPNSASSLPVPASRSPSDIQAAAASAAAALGAAAAAIEARSG------------FHG 121
            LNFPNSASSLP+PASRSPSDIQAAAASAAAALGAAAAA+EAR+              +G
Sbjct: 63  ELNFPNSASSLPIPASRSPSDIQAAAASAAAALGAAAAAMEARNNISSRRGSHSEDVMYG 122

Query: 122 GRSNDPGEVGNHFMDEDLIFDMPNVLMNMAEGMLLSPPRFNNHGGDDDGADHGTG-NLWN 170
            R     E+GN FMDEDLIFDMPNVLMNMAEGMLLSPPRFNNHGGDD+  D GT  NLWN
Sbjct: 123 ARYGQEYELGNQFMDEDLIFDMPNVLMNMAEGMLLSPPRFNNHGGDDN-RDFGTDQNLWN 182

[Close]

BLAST of CmoCh06G004540.1 vs. ExPASy TrEMBL
Match: A0A6J1CUD0 (ethylene-responsive transcription factor ERF024 OS=Momordica charantia OX=3673 GN=LOC111014369 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 3.1e-66
Identity = 145/183 (79.23%), Postives = 150/183 (81.97%), Query Frame = 0


Query: 1   MATSGRHPIYRGVRRRNTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALALKGHD 60
           MA+SGRHP+YRGVRRRNT KWVSEIREPRKPNRIWLGTFPT EMAAVAYDVAALALKG D
Sbjct: 1   MASSGRHPVYRGVRRRNTSKWVSEIREPRKPNRIWLGTFPTPEMAAVAYDVAALALKGQD 60

Query: 61  THLNFPNSASSLPVPASRSPSDIQAAAASAAAALGAAAAAIEA---------RSGFH--- 120
             LNFPNSASSLPVPASRSPSDIQAAAASAAAALGAAAAA+EA          SG H   
Sbjct: 61  AELNFPNSASSLPVPASRSPSDIQAAAASAAAALGAAAAAMEAGNSHPRNYSSSGTHYGD 120

Query: 121 -GGRSNDPGEVGNHFMDEDLIFDMPNVLMNMAEGMLLSPPRFNNHGGD-DDGADHGTGNL 170
             G   D GE G+ F+DEDLIFDMPNVLMNMAEGMLLSPPRFN HGGD DDG D G  NL
Sbjct: 121 VRGARYDQGESGSEFIDEDLIFDMPNVLMNMAEGMLLSPPRFNVHGGDNDDGDDDGDQNL 180

[Close]

BLAST of CmoCh06G004540.1 vs. ExPASy TrEMBL
Match: A0A5A7TQS0 (Ethylene-responsive transcription factor ERF024-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G003560 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.5e-65
Identity = 144/181 (79.56%), Postives = 153/181 (84.53%), Query Frame = 0


Query: 2   ATSGRHPIYRGVRRRNTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALALKGHDT 61
           ++SGRHP+YRGVRRRNTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALALKG DT
Sbjct: 3   SSSGRHPVYRGVRRRNTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALALKGQDT 62

Query: 62  HLNFPNSASSLPVPASRSPSDIQAAAASAAAALGAAAAAIEAR--SGFHGGRSND----- 121
            LNFPNSASSLP+PASRSPSDIQAAAASAAAALGAAAAA+EAR  SG   G  +D     
Sbjct: 63  ELNFPNSASSLPIPASRSPSDIQAAAASAAAALGAAAAAMEARNNSGSRRGSHSDDVVYE 122

Query: 122 -----PGEVGNHFMDEDLIFDMPNVLMNMAEGMLLSPPRFNNHGGDDDGADHGTG-NLWN 170
                  E+ + FMDEDLIFDMPNVLMNMAEGMLLSPPRFNNHGGD+D  D GT  NLWN
Sbjct: 123 ARYGQEYELESQFMDEDLIFDMPNVLMNMAEGMLLSPPRFNNHGGDED-RDFGTDQNLWN 182

[Close]

BLAST of CmoCh06G004540.1 vs. TAIR 10
Match: AT2G36450.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 194.5 bits (493), Expect = 6.9e-50
Identity = 116/174 (66.67%), Postives = 124/174 (71.26%), Query Frame = 0


Query: 5   GRHPIYRGVR-RRNTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALALKGHDTHL 64
           GRHP+YRGVR R+N+ KWVSEIREPRKPNRIWLGTF T EMAA+AYDVAALALKG    L
Sbjct: 10  GRHPLYRGVRQRKNSNKWVSEIREPRKPNRIWLGTFSTPEMAAIAYDVAALALKGSQAEL 69

Query: 65  NFPNSASSLPVPASRSPSDIQAAAASAAAALGAAAAAI------EARSGFHGGRSNDPGE 124
           NFPNS SSLP P S SP+DIQAAAASAAAA GAA  AI         SG     S+    
Sbjct: 70  NFPNSVSSLPAPTSMSPADIQAAAASAAAAFGAARDAIVMANNNSQTSGVACMNSSYDNT 129

Query: 125 VGNHFMDEDLIFDMPNVLMNMAEGMLLSPPR--FNNHGGDDDGADHGTGNLWNF 170
             N FMDEDL+FDMPNVLMNMAEGMLLSPPR    +   D DG   G   LWNF
Sbjct: 130 NMNGFMDEDLVFDMPNVLMNMAEGMLLSPPRPTVFDAAYDADGFPGGDDYLWNF 183

[Close]

BLAST of CmoCh06G004540.1 vs. TAIR 10
Match: AT1G12630.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 145.2 bits (365), Expect = 4.8e-35
Identity = 92/189 (48.68%), Postives = 118/189 (62.43%), Query Frame = 0


Query: 1   MATSG-----RHPIYRGVRRRNTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALA 60
           MA++G     + P+YRG+R R +GKWVSEIREPRK  RIWLGT+P AEMAA AYDVAA+A
Sbjct: 5   MASAGLGSRRKDPVYRGIRCR-SGKWVSEIREPRKTTRIWLGTYPMAEMAAAAYDVAAMA 64

Query: 61  LKGHDTHLNFPNSASSLPVPASRSPSDIQAAAASAAAALGAAAA-----AIEARSGFHGG 120
           LKG +  LNFP S  S PVP S S +DI+AAAA+AAA  G         A E +S     
Sbjct: 65  LKGREAVLNFPGSVGSYPVPESTSAADIRAAAAAAAAMKGCEEGEEEKKAKEKKSSSSKS 124

Query: 121 RS------NDPGE---VGNHFMDEDLIFDMPNVLMNMAEGMLLSPPRFNNHGGDDDGADH 170
           R+      ND G     G  FMDE+ + +MPN+L NMAEGM+++PP +      DD  ++
Sbjct: 125 RARECHVDNDVGSSSWCGTEFMDEEEVLNMPNLLANMAEGMMVAPPSWMGSRPSDDSPEN 184

[Close]

BLAST of CmoCh06G004540.1 vs. TAIR 10
Match: AT5G51990.1 (C-repeat-binding factor 4 )

HSP 1 Score: 139.0 bits (349), Expect = 3.4e-33
Identity = 86/175 (49.14%), Postives = 106/175 (60.57%), Query Frame = 0


Query: 6   RHPIYRGVRRRNTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALALKGHDTHLNF 65
           RHPIYRGVR+RN+GKWV E+REP K +RIWLGTFPT EMAA A+DVAALAL+G    LNF
Sbjct: 50  RHPIYRGVRQRNSGKWVCEVREPNKKSRIWLGTFPTVEMAARAHDVAALALRGRSACLNF 109

Query: 66  PNSASSLPVPASRSPSDIQAAAASAAAAL--------GAAAAAIEARSG---FHGGRSND 125
            +SA  L +P +  P +IQ AA+ AA A            AA  E  +G     G R  +
Sbjct: 110 ADSAWRLRIPETTCPKEIQKAASEAAMAFQNETTTEGSKTAAEAEEAAGEGVREGERRAE 169

Query: 126 PGEVGNHFMDEDLIFDMPNVLMNMAEGMLLSPPRFNNHGGDDDGADHGTGNLWNF 170
               G  +MD++ +  MPN   NMAEGMLL PP    +  D DG   G  +LW+F
Sbjct: 170 EQNGGVFYMDDEALLGMPNFFENMAEGMLLPPPEVGWNHNDFDGV--GDVSLWSF 222

[Close]

BLAST of CmoCh06G004540.1 vs. TAIR 10
Match: AT5G52020.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 136.3 bits (342), Expect = 2.2e-32
Identity = 87/174 (50.00%), Postives = 106/174 (60.92%), Query Frame = 0


Query: 4   SGRHPIYRGVRRRNTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALALKGHDTHL 63
           SG+H I+RG+R RN GKWVSEIREPRK  RIWLGT+P  EMAA AYDVAALALKG D  L
Sbjct: 59  SGKHSIFRGIRLRN-GKWVSEIREPRKTTRIWLGTYPVPEMAAAAYDVAALALKGPDAVL 118

Query: 64  NFPNSASSLPVPASRSPSDIQAAAASAAAALGAAAAAIE-ARSGFHGGRSNDPGEVGNH- 123
           NFP  A +   P S S +DI+AAA+ AA          E        G+  +  EV  + 
Sbjct: 119 NFPGLALTYVAPVSNSAADIRAAASRAAEMKQPDQGGDEKVLEPVQPGKEEELEEVSCNS 178

Query: 124 ----FMDEDLIFDMPNVLMNMAEGMLLSPPRFNNHG--GDDDGADHGTGNLWNF 170
               FMDE+ + +MP +L  MAEGML+SPPR   H    DD   +H   NLW++
Sbjct: 179 CSLEFMDEEAMLNMPTLLTEMAEGMLMSPPRMMIHPTMEDDSPENHEGDNLWSY 231

[Close]

BLAST of CmoCh06G004540.1 vs. TAIR 10
Match: AT4G25490.1 (C-repeat/DRE binding factor 1 )

HSP 1 Score: 135.6 bits (340), Expect = 3.8e-32
Identity = 87/174 (50.00%), Postives = 105/174 (60.34%), Query Frame = 0


Query: 6   RHPIYRGVRRRNTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALALKGHDTHLNF 65
           RHPIYRGVR+RN+GKWVSE+REP K  RIWLGTF TAEMAA A+DVAALAL+G    LNF
Sbjct: 44  RHPIYRGVRQRNSGKWVSEVREPNKKTRIWLGTFQTAEMAARAHDVAALALRGRSACLNF 103

Query: 66  PNSASSLPVPASRSPSDIQAAAASAAAALGAAAAAIEARSGFHGGRSND---------PG 125
            +SA  L +P S    DIQ AAA AA A        +  +  HG    +           
Sbjct: 104 ADSAWRLRIPESTCAKDIQKAAAEAALAF--QDETCDTTTTNHGLDMEETMVEAIYTPEQ 163

Query: 126 EVGNHFMDEDLIFDMPNVLMNMAEGMLLSPPRFN-NHGGDDDGADHGTGNLWNF 170
             G  +MDE+ +F MP +L NMAEGMLL PP    NH  D +G   G  +LW++
Sbjct: 164 SEGAFYMDEETMFGMPTLLDNMAEGMLLPPPSVQWNHNYDGEG--DGDVSLWSY 213

The following BLAST results are available for this feature:

BLAST of CmoCh06G004540.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SJR0	9.7e-49	66.67	Ethylene-responsive transcription factor ERF024 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q38Q39	6.7e-34	48.68	Ethylene-responsive transcription factor ERF027 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9CAN9	9.7e-33	48.17	Ethylene-responsive transcription factor ERF026 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9FJ93	4.8e-32	49.14	Dehydration-responsive element-binding protein 1D OS=Arabidopsis thaliana OX=370...	[more]
Q9FJ90	3.1e-31	50.00	Ethylene-responsive transcription factor ERF025 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of CmoCh06G004540.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G3I4	1.5e-89	100.00	ethylene-responsive transcription factor ERF024-like OS=Cucurbita moschata OX=36...	[more]
A0A6J1L0H2	6.4e-88	98.22	ethylene-responsive transcription factor ERF024-like OS=Cucurbita maxima OX=3661...	[more]
A0A0A0LBA2	4.8e-67	79.01	AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G751430 PE=...	[more]
A0A6J1CUD0	3.1e-66	79.23	ethylene-responsive transcription factor ERF024 OS=Momordica charantia OX=3673 G...	[more]
A0A5A7TQS0	1.5e-65	79.56	Ethylene-responsive transcription factor ERF024-like protein OS=Cucumis melo var...	[more]

BLAST of CmoCh06G004540.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G36450.1	6.9e-50	66.67	Integrase-type DNA-binding superfamily protein	[more]
AT1G12630.1	4.8e-35	48.68	Integrase-type DNA-binding superfamily protein	[more]
AT5G51990.1	3.4e-33	49.14	C-repeat-binding factor 4	[more]
AT5G52020.1	2.2e-32	50.00	Integrase-type DNA-binding superfamily protein	[more]
AT4G25490.1	3.8e-32	50.00	C-repeat/DRE binding factor 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 10..21 score: 65.15 coord: 32..48 score: 66.42
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 9..72 e-value: 1.1E-33 score: 127.9
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 8..59 e-value: 8.1E-13 score: 48.4
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 9..66 score: 22.629026
IPR001471	AP2/ERF domain	CDD	cd00018	AP2	coord: 8..68 e-value: 2.38545E-31 score: 105.817
IPR036955	AP2/ERF domain superfamily	GENE3D	3.30.730.10	AP2/ERF domain	coord: 9..68 e-value: 2.0E-24 score: 87.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..170
None	No IPR available	PANTHER	PTHR31985	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED	coord: 3..169
None	No IPR available	PANTHER	PTHR31985:SF121	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024	coord: 3..169
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 9..68

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh06G004540	CmoCh06G004540	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G004540.1:exon:7460	CmoCh06G004540.1:exon:7460	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G004540.1:cds	CmoCh06G004540.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh06G004540.1	CmoCh06G004540.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity