CmoCh06G002980.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G002980.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	metallothionein-like protein type 2
Location	Cmo_Chr06: 1485885 .. 1487442 (-)
Sequence length	1144
RNA-Seq Expression	CmoCh06G002980.1
Synteny	CmoCh06G002980.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCGGGACTAAACGCGAGAATTCCTATCCGTTACGATTTTGACACGTGGACGGTGGTTATGGTACGCTCTTCTTTCCCCGCCCCTATATATAGACTCATCCGTCACCTCTACATCTCGTTCAATAACGAGAAGTTTTAGTTTGATTTCGAAAACAAGTTTCATTATCTCGTTGTTCTTAGTTCTTCATCGTCGAAAATGTCGTGCTGTGGTGGAAACTGTGGATGCGGCTCTGCCTGCAAGTGCGGAAACGGCTGCGGAGGGTGAGTAATCGCTAATTTTCTCCTTTAGATTTTGATTGTGTGAACTGATTTCTCAATTTCCTTCTGTGGAGAATGATTTCTAGAGATTTTGACCTTCCGTTTTATTGTTATTTTTTTCGATTTCCTTTTCGACTCTGTACCTTAGTTCCTCGATCGACTGCGATCTGATCATGTGTTGTTTCTGTTTATTGAATTCTGAATATGAGAAAACATCACGCGATCACTGCCTATAATATTCTGAATTATCTGAGAAGGACTCTGATAATAGTTTTTTAGAGGATAATTACGATGATTCTGACGTTTCGTTTTGATATTTCGTTATGCAGTTGCAAGATGTTCCCTGACATGAGCTTCTCTGAGACAACCGCAACCATCGAGACCTTCGTCGTCGGCCTCGCTCCTCAGAAGATGTAAGTTTGTTTGAATGAGCCTAATTTTTCAAGAGAAATTCGGTCATGAGTCATAATTTTAATTAACTGTACTTATTTTCCATATTAGGTCCTTCGAGGTTGCAGAGATGGGAGCCGAGAACGGCTGCAAATGCGGTGACAACTGCACCTGCGATCCATGCAACTGTAAATGAGCAATTGCTCAAATCCTTGCGACCTGAGATGTCTTCGAGTACTTAAGTATGATCATAATAACAATTATCAAATCTTCCAGTGTTTTCCTTCCGTCGTTGCGTCTTTAAGAGTCGATTGAAGTGTTCCTTTCAAATAATAGCAGTTGTTAAGTTGTGGAAAAACTGATATGCTGTTATGGCGCACGGATCTTGTTATCCATAGATGCCTGTGTTTATCCATGTCTGTTTAACGTTTGCTTTTCTCTGTGTAAAGAAGCGGTATGTGCTAATTTATGTGTAACAGAGTTTGTTCTTGTTATCCATATCTATTGTTGAAAATCCAGAACCGAGTTTGAGTGCTCTAAAGGATCTGACTATGAAAAGTAAAATTCAACAATTTCGATGGGGCCGGTCGAATAGCTAACACCTTTCATTCTCAATCGATGTCCAAAATTAAATGCATACTTACGCGTGCCAGTTATCTTTCGCGACTGATAAGCCGAACAATCTGAGTTTACATGGTAAACAGTTCTGAAAATTGAATACATCCCCGTTCTCCATCCTTTAATTTATTTATTTTAAGGATGGTAAGTTGTTTTTTCTTTTTGCATCTTTTCTGGAAATCCTCCTTATCCTTTCATCCCTAAGTCGGCGAGTTTAAATTTTATTTTTTCTGTATTCTGTTGTTTGAGTTTATATTACAGATATTTTCAATAATAGTCAAATGATCTCTCT

mRNA sequence

TTCGGGACTAAACGCGAGAATTCCTATCCGTTACGATTTTGACACGTGGACGGTGGTTATGGTACGCTCTTCTTTCCCCGCCCCTATATATAGACTCATCCGTCACCTCTACATCTCGTTCAATAACGAGAAGTTTTAGTTTGATTTCGAAAACAAGTTTCATTATCTCGTTGTTCTTAGTTCTTCATCGTCGAAAATGTCGTGCTGTGGTGGAAACTGTGGATGCGGCTCTGCCTGCAAGTGCGGAAACGGCTGCGGAGGTTGCAAGATGTTCCCTGACATGAGCTTCTCTGAGACAACCGCAACCATCGAGACCTTCGTCGTCGGCCTCGCTCCTCAGAAGATGTCCTTCGAGGTTGCAGAGATGGGAGCCGAGAACGGCTGCAAATGCGGTGACAACTGCACCTGCGATCCATGCAACTGTAAATGAGCAATTGCTCAAATCCTTGCGACCTGAGATGTCTTCGAGTACTTAAGTATGATCATAATAACAATTATCAAATCTTCCAGTGTTTTCCTTCCGTCGTTGCGTCTTTAAGAGTCGATTGAAGTGTTCCTTTCAAATAATAGCAGTTGTTAAGTTGTGGAAAAACTGATATGCTGTTATGGCGCACGGATCTTGTTATCCATAGATGCCTGTGTTTATCCATGTCTGTTTAACGTTTGCTTTTCTCTGTGTAAAGAAGCGGTATGTGCTAATTTATGTGTAACAGAGTTTGTTCTTGTTATCCATATCTATTGTTGAAAATCCAGAACCGAGTTTGAGTGCTCTAAAGGATCTGACTATGAAAAGTAAAATTCAACAATTTCGATGGGGCCGGTCGAATAGCTAACACCTTTCATTCTCAATCGATGTCCAAAATTAAATGCATACTTACGCGTGCCAGTTATCTTTCGCGACTGATAAGCCGAACAATCTGAGTTTACATGGTAAACAGTTCTGAAAATTGAATACATCCCCGTTCTCCATCCTTTAATTTATTTATTTTAAGGATGGTAAGTTGTTTTTTCTTTTTGCATCTTTTCTGGAAATCCTCCTTATCCTTTCATCCCTAAGTCGGCGAGTTTAAATTTTATTTTTTCTGTATTCTGTTGTTTGAGTTTATATTACAGATATTTTCAATAATAGTCAAATGATCTCTCT

Coding sequence (CDS)

ATGTCGTGCTGTGGTGGAAACTGTGGATGCGGCTCTGCCTGCAAGTGCGGAAACGGCTGCGGAGGTTGCAAGATGTTCCCTGACATGAGCTTCTCTGAGACAACCGCAACCATCGAGACCTTCGTCGTCGGCCTCGCTCCTCAGAAGATGTCCTTCGAGGTTGCAGAGATGGGAGCCGAGAACGGCTGCAAATGCGGTGACAACTGCACCTGCGATCCATGCAACTGTAAATGA

Protein sequence

MSCCGGNCGCGSACKCGNGCGGCKMFPDMSFSETTATIETFVVGLAPQKMSFEVAEMGAENGCKCGDNCTCDPCNCK

Homology

[Close]

BLAST of CmoCh06G002980.1 vs. ExPASy Swiss-Prot
Match: Q40158 (Metallothionein-like protein type 2 B OS=Solanum lycopersicum OX=4081 GN=MTB PE=2 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.2e-27
Identity = 54/80 (67.50%), Postives = 65/80 (81.25%), Query Frame = 0


Query: 1  MSCCGGNCGCGSACKCGNGCGGCKMFPDMSFSETTATIETFVVGLAPQKMSFEVAEMG-- 60
          MSCCGGNCGCGS+CKCGNGCGGCKM+PDMS++E++ T ET V+G+ P+K SF   EMG  
Sbjct: 1  MSCCGGNCGCGSSCKCGNGCGGCKMYPDMSYTESSTTTETLVLGVGPEKTSFGAMEMGES 60

Query: 61 --AENGCKCGDNCTCDPCNC 77
            AENGCKCG +C C+PC C
Sbjct: 61 PVAENGCKCGSDCKCNPCTC 80

[Close]

BLAST of CmoCh06G002980.1 vs. ExPASy Swiss-Prot
Match: P30564 (Metallothionein-like protein type 2 OS=Ricinus communis OX=3988 GN=MTI PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.2e-27
Identity = 58/81 (71.60%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 1  MSCCGGNCGCGSACKCGNGCGGCKMFPDMSFSETTATIETFVVGLAPQKMSFEVAEMGA- 60
          MSCCGGNCGCGS CKCGNGCGGCKM+PDMSFSE T T ET V+G+  +K  FE  EMG  
Sbjct: 1  MSCCGGNCGCGSGCKCGNGCGGCKMYPDMSFSEKTTT-ETLVLGVGAEKAHFEGGEMGVV 60

Query: 61 ---ENGCKCGDNCTCDPCNCK 78
             E GCKCGDNCTC+PC CK
Sbjct: 61 GAEEGGCKCGDNCTCNPCTCK 80

[Close]

BLAST of CmoCh06G002980.1 vs. ExPASy Swiss-Prot
Match: P43398 (Metallothionein-like protein 2 OS=Trifolium repens OX=3899 GN=MT1A PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.8e-26
Identity = 57/78 (73.08%), Postives = 64/78 (82.05%), Query Frame = 0


Query: 1  MSCCGGNCGCGSACKCGNGCGGCKMFPDMSFSETTATIETFVVGLAPQKMSFEVAEMGAE 60
          MSCCGGNCGCGSACKCGNGCGGCKM  D+S++E+T T ET V+G+   K  FE AEMGAE
Sbjct: 1  MSCCGGNCGCGSACKCGNGCGGCKMNADLSYTESTTT-ETIVMGVGSAKAQFEGAEMGAE 60

Query: 61 N-GCKCGDNCTCDPCNCK 78
          + GCKCG NCTCDPC CK
Sbjct: 61 SGGCKCGANCTCDPCTCK 77

[Close]

BLAST of CmoCh06G002980.1 vs. ExPASy Swiss-Prot
Match: P43390 (Metallothionein-like protein type 2 OS=Actinidia deliciosa OX=3627 GN=pKIWI504 PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.3e-26
Identity = 55/79 (69.62%), Postives = 64/79 (81.01%), Query Frame = 0


Query: 1  MSCCGGNCGCGSACKCGNGCGGCKMFPDMSFSETTATIETFVVGLAPQKMSFEVAEMG-- 60
          MSCCGG CGCGS+C CG+GCGGC M+PD+S+SE T T ET +VG+APQK  FE +EMG  
Sbjct: 1  MSCCGGKCGCGSSCSCGSGCGGCGMYPDLSYSEMTTT-ETLIVGVAPQKTYFEGSEMGVA 60

Query: 61 AENGCKCGDNCTCDPCNCK 78
          AENGCKCG +C CDPC CK
Sbjct: 61 AENGCKCGSDCKCDPCTCK 78

[Close]

BLAST of CmoCh06G002980.1 vs. ExPASy Swiss-Prot
Match: Q39459 (Metallothionein-like protein 2 OS=Cicer arietinum OX=3827 PE=3 SV=2)

HSP 1 Score: 118.6 bits (296), Expect = 3.1e-26
Identity = 58/80 (72.50%), Postives = 66/80 (82.50%), Query Frame = 0


Query: 1  MSCCGGNCGCGSACKCGNGCGGCKMFPDMSFSETTATIETFVVGLAPQKMSFEVAEM--G 60
          MSCCGGNCGCGS+CKCG+GCGGCKM+PDMS++E T T ET V+G+A  K  FE AEM  G
Sbjct: 1  MSCCGGNCGCGSSCKCGSGCGGCKMYPDMSYTEQT-TSETLVMGVASGKTQFEGAEMGFG 60

Query: 61 AEN-GCKCGDNCTCDPCNCK 78
          AEN GCKCG NCTC+PC CK
Sbjct: 61 AENDGCKCGSNCTCNPCTCK 79

[Close]

BLAST of CmoCh06G002980.1 vs. ExPASy TrEMBL
Match: A0A6J1I8Z4 (metallothionein-like protein type 2 OS=Cucurbita maxima OX=3661 GN=LOC111470252 PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 7.3e-39
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MSCCGGNCGCGSACKCGNGCGGCKMFPDMSFSETTATIETFVVGLAPQKMSFEVAEMGAE 60
          MSCCGGNCGCGSACKCGNGCGGCKMFPDMSFSETTATIETFVVGLAPQKMSFEVAEMGAE
Sbjct: 1  MSCCGGNCGCGSACKCGNGCGGCKMFPDMSFSETTATIETFVVGLAPQKMSFEVAEMGAE 60

Query: 61 NGCKCGDNCTCDPCNCK 78
          NGCKCGDNCTCDPCNCK
Sbjct: 61 NGCKCGDNCTCDPCNCK 77

[Close]

BLAST of CmoCh06G002980.1 vs. ExPASy TrEMBL
Match: A0A6J1GBI9 (metallothionein-like protein type 2 OS=Cucurbita moschata OX=3662 GN=LOC111452655 PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 7.3e-39
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MSCCGGNCGCGSACKCGNGCGGCKMFPDMSFSETTATIETFVVGLAPQKMSFEVAEMGAE 60
          MSCCGGNCGCGSACKCGNGCGGCKMFPDMSFSETTATIETFVVGLAPQKMSFEVAEMGAE
Sbjct: 1  MSCCGGNCGCGSACKCGNGCGGCKMFPDMSFSETTATIETFVVGLAPQKMSFEVAEMGAE 60

Query: 61 NGCKCGDNCTCDPCNCK 78
          NGCKCGDNCTCDPCNCK
Sbjct: 61 NGCKCGDNCTCDPCNCK 77

[Close]

BLAST of CmoCh06G002980.1 vs. ExPASy TrEMBL
Match: A0A6J1F8X2 (metallothionein-like protein type 2 B OS=Cucurbita moschata OX=3662 GN=LOC111441898 PE=3 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 4.7e-38
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1  MSCCGGNCGCGSACKCGNGCGGCKMFPDMSFSETTATIETFVVGLAPQKMSFEVAEMGAE 60
          MSCCGGNCGCGSACKCGNGCGGCKMFPDMSFSETTATIETFVVGLAPQKMSFE +EMGAE
Sbjct: 1  MSCCGGNCGCGSACKCGNGCGGCKMFPDMSFSETTATIETFVVGLAPQKMSFEASEMGAE 60

Query: 61 NGCKCGDNCTCDPCNCK 78
          NGCKCGDNCTCDPCNCK
Sbjct: 61 NGCKCGDNCTCDPCNCK 77

[Close]

BLAST of CmoCh06G002980.1 vs. ExPASy TrEMBL
Match: A0A6J1J2S1 (metallothionein-like protein type 2 B OS=Cucurbita maxima OX=3661 GN=LOC111482153 PE=3 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.3e-37
Identity = 74/77 (96.10%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MSCCGGNCGCGSACKCGNGCGGCKMFPDMSFSETTATIETFVVGLAPQKMSFEVAEMGAE 60
          MSCCGGNCGCGSACKCGNGCGGCKMFPDMSFSETTATIE FVVGLAPQKMSFE +EMGAE
Sbjct: 1  MSCCGGNCGCGSACKCGNGCGGCKMFPDMSFSETTATIEIFVVGLAPQKMSFEASEMGAE 60

Query: 61 NGCKCGDNCTCDPCNCK 78
          NGCKCGDNCTCDPCNCK
Sbjct: 61 NGCKCGDNCTCDPCNCK 77

[Close]

BLAST of CmoCh06G002980.1 vs. ExPASy TrEMBL
Match: A0A1S3B6L7 (metallothionein-like protein type 2 OS=Cucumis melo OX=3656 GN=LOC103486389 PE=3 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.6e-36
Identity = 72/77 (93.51%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MSCCGGNCGCGSACKCGNGCGGCKMFPDMSFSETTATIETFVVGLAPQKMSFEVAEMGAE 60
          MSCCGGNCGCGSACKCGNGCGGCK FPD+SFSETTATIETFVVG APQKMS+EVAEMGAE
Sbjct: 1  MSCCGGNCGCGSACKCGNGCGGCKSFPDLSFSETTATIETFVVGFAPQKMSYEVAEMGAE 60

Query: 61 NGCKCGDNCTCDPCNCK 78
          NGCKCGDNCTCDPC CK
Sbjct: 61 NGCKCGDNCTCDPCTCK 77

[Close]

BLAST of CmoCh06G002980.1 vs. TAIR 10
Match: AT3G09390.1 (metallothionein 2A )

HSP 1 Score: 110.5 bits (275), Expect = 5.9e-25
Identity = 53/81 (65.43%), Postives = 60/81 (74.07%), Query Frame = 0


Query: 1  MSCCGGNCGCGSACKCGNGCGGCKMFPDMSFSETTATIETFVVGLAP-QKMSFEVA--EM 60
          MSCCGGNCGCGS CKCGNGCGGCKM+PD+ FS  T T ETFV+G+AP  K  +E +    
Sbjct: 1  MSCCGGNCGCGSGCKCGNGCGGCKMYPDLGFSGETTTTETFVLGVAPAMKNQYEASGESN 60

Query: 61 GAEN-GCKCGDNCTCDPCNCK 78
           AEN  CKCG +C CDPC CK
Sbjct: 61 NAENDACKCGSDCKCDPCTCK 81

[Close]

BLAST of CmoCh06G002980.1 vs. TAIR 10
Match: AT5G02380.1 (metallothionein 2B )

HSP 1 Score: 92.4 bits (228), Expect = 1.7e-19
Identity = 47/81 (58.02%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 1  MSCCGGNCGCGSACKCGNGCGGCKMFPDMSFSETTATIETFVVGLAPQKMSFEVAE---- 60
          MSCCGG+CGCGSACKCGNGCGGCK +PD+   E TAT ET V+G+AP   S   A     
Sbjct: 1  MSCCGGSCGCGSACKCGNGCGGCKRYPDL---ENTAT-ETLVLGVAPAMNSQYEASGETF 60

Query: 61 MGAENGCKCGDNCTCDPCNCK 78
          +   + CKCG +C C+PC CK
Sbjct: 61 VAENDACKCGSDCKCNPCTCK 77

The following BLAST results are available for this feature:

BLAST of CmoCh06G002980.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q40158	1.2e-27	67.50	Metallothionein-like protein type 2 B OS=Solanum lycopersicum OX=4081 GN=MTB PE=...	[more]
P30564	1.2e-27	71.60	Metallothionein-like protein type 2 OS=Ricinus communis OX=3988 GN=MTI PE=3 SV=1	[more]
P43398	1.8e-26	73.08	Metallothionein-like protein 2 OS=Trifolium repens OX=3899 GN=MT1A PE=3 SV=1	[more]
P43390	2.3e-26	69.62	Metallothionein-like protein type 2 OS=Actinidia deliciosa OX=3627 GN=pKIWI504 P...	[more]
Q39459	3.1e-26	72.50	Metallothionein-like protein 2 OS=Cicer arietinum OX=3827 PE=3 SV=2	[more]

BLAST of CmoCh06G002980.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I8Z4	7.3e-39	100.00	metallothionein-like protein type 2 OS=Cucurbita maxima OX=3661 GN=LOC111470252 ...	[more]
A0A6J1GBI9	7.3e-39	100.00	metallothionein-like protein type 2 OS=Cucurbita moschata OX=3662 GN=LOC11145265...	[more]
A0A6J1F8X2	4.7e-38	97.40	metallothionein-like protein type 2 B OS=Cucurbita moschata OX=3662 GN=LOC111441...	[more]
A0A6J1J2S1	2.3e-37	96.10	metallothionein-like protein type 2 B OS=Cucurbita maxima OX=3661 GN=LOC11148215...	[more]
A0A1S3B6L7	2.6e-36	93.51	metallothionein-like protein type 2 OS=Cucumis melo OX=3656 GN=LOC103486389 PE=3...	[more]

BLAST of CmoCh06G002980.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09390.1	5.9e-25	65.43	metallothionein 2A	[more]
AT5G02380.1	1.7e-19	58.02	metallothionein 2B	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000347	Metallothionein, family 15, plant	PFAM	PF01439	Metallothio_2	coord: 1..76 e-value: 2.2E-29 score: 102.2
IPR000347	Metallothionein, family 15, plant	PANTHER	PTHR33543	METALLOTHIONEIN-LIKE PROTEIN 2A	coord: 1..76
None	No IPR available	PANTHER	PTHR33543:SF1	METALLOTHIONEIN-LIKE PROTEIN 2A	coord: 1..76

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh06G002980	CmoCh06G002980	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G002980.1:exon:7311	CmoCh06G002980.1:exon:7311	exon
CmoCh06G002980.1:exon:7310	CmoCh06G002980.1:exon:7310	exon
CmoCh06G002980.1:exon:7309	CmoCh06G002980.1:exon:7309	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G002980.1:three_prime_utr	CmoCh06G002980.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G002980.1:cds	CmoCh06G002980.1:cds_3	CDS
CmoCh06G002980.1:cds	CmoCh06G002980.1:cds_2	CDS
CmoCh06G002980.1:cds	CmoCh06G002980.1:cds	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G002980.1:five_prime_utr	CmoCh06G002980.1:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh06G002980.1	CmoCh06G002980.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding