CmoCh06G002170.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G002170.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	selT-like protein
Location	Cmo_Chr06: 1170352 .. 1176204 (-)
Sequence length	2284
RNA-Seq Expression	CmoCh06G002170.1
Synteny	CmoCh06G002170.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAATGGGAATCGGACACGGAGTCTTTGATTTAGTCCTATTTTGATTATTGGTCGTAGCACGTGCCGTTGTTGTTGACTTAATGGCATTCCTGTCTGAAGACCCATGCAGAATATTGTTTGACCTGCCGACTTTGTTGACTTTCCGTCTTCCTTAATTGGGCCTTTTCTCATTTACATTTTGGGCCTGCGAAAACTTGGGCTACCAAATAAATTGTTAGAGGCTTCGGCCCATTTGGCCCATCTATATGACTCGTGAACGTGCAGTTGGACGGGGTATAAATAACGCGGCAAAATAATTACACGAGGACAATTGTAGCCTTCAATTGGCGTCATATTTTCGTTTGTAAATTTTCCTTTTTCCCCCAAATCCTTCTCGTGGAAGTGAGTATCTGGTTCTCGAGAGCTTTGCATTGTTGACTCCGATGGATCGAACACAGATAGATCTGTTAGGGCTGCCGATCTTTCTGCTTTTCACTGATATCGTGAATCTTTTTACTCCCCCGCCTCCTAAACCGGCCAATCACTCTCCACCTCGAGTTCACTATCAGCCTAAATCTGAATCAGTCATCCAGGAACCGATTCAATTTCCTACGGAGGTGAATGATTTTCATGTTTGATTGGATTCATCTTGATTTTTGTTCGTGTTTTGTGATATTCAGCAACTTGATTTGTTGTCTTGGTTTGGAATGCAGAAACAGAGCGGAATCGGAGGAATTGGCCATGGCAGCGTTATCAATATCAATTTCTACGTTTCTTGTTCTTCAGGTAGTTCATCTTCATTATTATAAAAGTTTGTGTCTATCTGTCTCATTTTGGGCGGAAAGTAAGTGAATCAAACGCTTATGTGGTTTTCCTTCCGGTGTTTCTTCTTAACATCCTTGATGGAAGCGAACATTTTATTTTCTATCTCACTTGTGGTTGTTGAGAGTCCCTATGATGAAAAGCTGGTTGTACGCTGGAATGTTCGCTGTTGTTGTTCCTTTAAATTCGATTTCGTTGTTTTTTGTTTTTTTTTCTTTATTTTCCACAACGCAGGCCTCTTTTATTATCTTTGACTTTAATTTCATTCCTCGATTTAACAGACGTTTCGATTTCTATACTCTCTTGTGGTTGTTTTTGTGAGAATATTACTCTCTAGTGGTTGAGATTCGTTATGATGAATAGTTGGTTGTACTTCGGAATTTTCTCTGTTGTTGTTCCTCTAAACTTGATTTTTTTTTTTTTACTTCTTTAAGCTAAGGTTTCTGTTATTATGTTTATATTCGTCTATTGATCAAACAAACATTTCGATTTCTCTGCTATGAACTATCTAGTGGTTGCTGAGAGTCCTTATGATGAAAAATTAGTGGTACTTTGGAACAACATGATTTCTTTGTTTTTTTTTTTCATTTGATTAGCACAGGTTTCTTTTATTTCTGTAACATCCTCGATTGAACCAGTATTTCAATTTCTCCACTCTTTCCTGGTTGTTGAGAATCATCATTATGAAAAACTGGCCGTACTCTGCTGCACTGTTGTCGTTCGGTTAAACATTGTCTTAAGTTTTTTTATCATCGTCAACTTCCTCAGTTGAACAAGTATTTCAATTTCTCCTCTCTAGCGGCTATTGAGAGTCATTATAATAGAAAACTGGTTGTACACTTCTTCACTGTTCTTGTTAAAGAATCCGAGTTTGAGTGAACATAGGTGCAGACCTCAACTCAGAAATACAATTTGTAATATTCCATTCGGAGCCAACTTCACATCGTTTGGTACTTAGGTTACCTGATTTGGAGCAAGACAGAAATGGAAGTTTCAATTAACCTCCCCTTTTTGAGACTGTAATTAAATGAACTTCTCGTGCTTTAGCGTGTCTTGTGCTTTAGCGTGTCCATTGATAAGCAACTTCATTAGAGTAAGTTTGCAAGCTTAATTTAATTAGGTATAAGAACAGGTTAATGTGCAGACTACTCAATGTTTAGGTTTAGGATAAAAAGTGAACTGGATTCACGATGATAGAATTTTGGTCTCTGCTCATAGAGCATAAGAATTGAACACAAGTGGGCCAAAAGTGAACTGGATTTACAATTGTTATTACACGAGATAGTTTTAAAAAGAATTTCACTCGTGAACCCAAGTGGGCCAATAGATCGTCCCATTGTTATTCACAGATAGGAGATGTTATGAACCCGTGGCCATGCATTTGATCCATACGGTTTTGGAATGTTTTCATTAAAATGTTGTTGTACCATCATCTTATCTCAATTTGTGGCAGTGCTTATGATTTTACACTTTTTGCAGAGGAACTGCAATAACGATGAAAAATATGCTGGAGTAATCATTTCCTGGACTTGAAGTTATTTTGGCGAATTATCCCCCACCCATCCCAAAGCGTCCTCTCAGTAAAGTAGTACCCGTCGTTCAATTTGGAATCGTTGCAACAATAATGGCGGGGGAACAGATTTTTCCTAGGTTGGGGATGGCACCACCACCTTGGTACTATTCCTTGCGTGCTAATAGGTTTGGAAGCATCGCAAGCACGTGGCTGTTTGCAAATTTTATCCGGTCGTTCTTGTTAGACGAACACGACTCTCCACAATAGTATGATATTGTCCCCTTTGAGTATAAGCTCTCGTGGCTTTGCTTTGGGCTTTCCCAAAATGCCTCATATCAATGAAGACAGTATTCTTTGATTAAAAACCCATGATCATTTTCTAAATTAGCCGATGTGGGACTTTCATCATCCAACAATTCTTACAGAGTTCTGGAGCCTTCGAAGTATATTGCAATGGTGAAATGGTAAGATTCTTTTGAAATCTCATTCGGGTCATTTTTAGTGAGATGCTATTTACTGATCGTATCCATTTTCTGAAGGTCTTTTCGAAGTTGAAGGAGCAGTGATTTCCTAGTGAGATCGAGTTGAGAGATGTTATTGGTAGGAAACTTTCTGGGTCGAGATTTGTCGACAACTCGGGAGGATTTTGGTCATAGGTATGTGACTTCTTGTGATCAATACTATGAAATTAACAACTGGTGATGTCATGACAAATCTAATCCTAGTTCATAATAGCCAAGCAGGAGCATGTGGGAGAGATAGATCCAGTTTCAATATGCCTATCCTAAACATAATCCCTGTAACGTTTCTTTCCTACGAAATCAAACTTTTAAACTTTCAAATTTCAAAATAACTTGATTTATACTAATTAATTACCTCCTGTTTCATTAATATTTGCTTCTTATAAGGGCTAGCGAAACAGTTTGAAGCCTGCTGCGCTACCCAAAGTAAGCCGCCGATAACCTTTTTGGCTGCCTATCAACAGGTACTAGACTTTGCTGGTGAGCAGACCATTGGTATCATTTACTAGTAATTTCGGAAATGTTTGCTTAAAAATGATCTAATGAGTAGTGCAGTAGAGATTATAATAACAACATCTAGGTTTTTAAACTAAAAAAATTTAAATTTCAACTTTATTTAGAATTCACAAATCTATGAAAAAAAATTAAAAAATTTAATCTTTTATTAGACACAATATTTAGTTTTATGTATAATTAATTCGTGGAGGACTCATTTGACAATCTCTATATACAAAATTATCTAATATTTTTTTATAAGTACATCAAACTTTAGTGATTAATTTATAATATAACTAAGAAAATTCTCACCATGTACAATATTTTGATGATGAATATAGAGTTAGGCGTGTTTAATTCTTGTTCATTATATTTTTTCCCATCATCACCTACTGAAACGAATAAACTGAGATACAAAATTCAAATTATTGGCCAAAATGATTATGTTGAAGCTTTTCTATTTGAGAAAGTATATGAAAAGTTCTTGTTTTCGTTACCAAATAAATTATATGCATGCATGTACGTATATATGCATGAAAAGATAAACGGTATGTGCAAAACTGGGATACTGATGAAAAAATAAACACAAAATTTAAAAAAGAACAAAAATATGTATTTTTAACAAGCGTCATGAAATCCATTCCAAGGCCTAACTTTCCGTTTCTAAGCAAACACATCAAAATCCAAACGAATCTAACCTTAAAAATCTCGCAGCCAAAAAGAAAAAAAACAAAACAAATAAACACACCACCAAAACTATATGATTTTTTTAATTAAGTTTTAAACGTTACATTCAAATTTTGTTGGTGAAATCTCACCTCAGAAATTATCCGTGTTTAAGAAATGGCCAGAAAACACCCGTAGCTTTTTAAAAACGCAACTTTTTTTTTTTTTTTTTTTTTTAAAATTTTTTTTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTAAAATTTTATTTTAACGGAAAAACTAAAAAGCTCTTATTGCACACCCCCACACCCGGGGTCTCGTCTCTCAGCATCCTTCTGCAACCCGTAAGCTCTGATTCTAAGATGAAGCTGAGCCACGGCGGCCAAAAATCTTACGGTTTGCGCTGGCGTAAGAATCTCCGCCACTTTCAACGCCGTTTCTCTTCTAAAAAAATCAGCACTCGCCAGCACCGACTGAAACGCCGCTTTCAACGCCTCCATTTCGGTCCCACCAGTAACGCCGTCGTGGCCCTGCCTCCGGAAAAACTCCAGCAACGGCGGCGCCGCCACTTTTTCTTGAATCTTCGCTAAGTCATTGTTTAGCATCCGCTCTTCGACCTTCACGTCTTCCCTCAGCCGCCCAATTCTCAACACTTGATCGTCCCACAAGTCGTTTATGGACTCGTTGACGAGCCGGAAAATCAGGCCCGGCCGGAATCCGCCGATCCACAACAGACTCTGCTCGTAGGTGGTGAACCAAGTGGGGGAAAAAACGAGAAAAATATCCCTTTGGGCAATTCTAGATTTTTTCTCGTAATATTCCTCGTAGTGGCTGAGGGTTCGAGAAATTAAATCATCGAGATCGCCGTTGTCCGCAGCGTCGTCGGGATGGCGGCGCGTGGCTGTCAGAAGCTCGTCGAGATATTGTTGTTGGCGGAGAAGCCAGCCTTCAAAAAATGCTGTGAATGAGTCAACATTGTAATCGTCCCCTGGCATTTACAGAGAAATACAGAGAGACAAAAGGAGGTGTGGCGAACTCAAGGCTGATTCAAGAGAGACAGAAACAGAGAATTTTATGGGATTTTTTTTTTTTTTCTTTTTGTTTTTTTTTTGGGTGTCAAGATTTTGAGATTTATGTCTCTATATGTTACAGTTATGAAAGGAAACTTTGGGAGAACACTTTGCTTA

mRNA sequence

CAATGGGAATCGGACACGGAGTCTTTGATTTAGTCCTATTTTGATTATTGGTCGTAGCACGTGCCGTTGTTGTTGACTTAATGGCATTCCTGTCTGAAGACCCATGCAGAATATTGTTTGACCTGCCGACTTTGTTGACTTTCCGTCTTCCTTAATTGGGCCTTTTCTCATTTACATTTTGGGCCTGCGAAAACTTGGGCTACCAAATAAATTGTTAGAGGCTTCGGCCCATTTGGCCCATCTATATGACTCGTGAACGTGCAGTTGGACGGGGTATAAATAACGCGGCAAAATAATTACACGAGGACAATTGTAGCCTTCAATTGGCGTCATATTTTCGTTTGTAAATTTTCCTTTTTCCCCCAAATCCTTCTCGTGGAAGTGAGTATCTGGTTCTCGAGAGCTTTGCATTGTTGACTCCGATGGATCGAACACAGATAGATCTGTTAGGGCTGCCGATCTTTCTGCTTTTCACTGATATCGTGAATCTTTTTACTCCCCCGCCTCCTAAACCGGCCAATCACTCTCCACCTCGAGTTCACTATCAGCCTAAATCTGAATCAGTCATCCAGGAACCGATTCAATTTCCTACGGAGAAACAGAGCGGAATCGGAGGAATTGGCCATGGCAGCGTTATCAATATCAATTTCTACGTTTCTTGTTCTTCAGAGGAACTGCAATAACGATGAAAAATATGCTGGAGTAATCATTTCCTGGACTTGAAGTTATTTTGGCGAATTATCCCCCACCCATCCCAAAGCGTCCTCTCAGTAAAGTAGTACCCGTCGTTCAATTTGGAATCGTTGCAACAATAATGGCGGGGGAACAGATTTTTCCTAGGTTGGGGATGGCACCACCACCTTGGTACTATTCCTTGCGTGCTAATAGGTTTGGAAGCATCGCAAGCACGTGGCTGTTTGCAAATTTTATCCGGTCGTTCTTGTTAGACGAACACGACTCTCCACAATAGTATGATATTGTCCCCTTTGAGTATAAGCTCTCGTGGCTTTGCTTTGGGCTTTCCCAAAATGCCTCATATCAATGAAGACAGTATTCTTTGATTAAAAACCCATGATCATTTTCTAAATTAGCCGATGTGGGACTTTCATCATCCAACAATTCTTACAGAGTTCTGGAGCCTTCGAAGTATATTGCAATGGTGAAATGGTCTTTTCGAAGTTGAAGGAGCAGTGATTTCCTAGTGAGATCGAGTTGAGAGATGTTATTGGTAGGAAACTTTCTGGGTCGAGATTTGTCGACAACTCGGGAGGATTTTGGTCATAGCCAAGCAGGAGCATGTGGGAGAGATAGATCCAGTTTCAATATGCCTATCCTAAACATAATCCCTGGCTAGCGAAACAGTTTGAAGCCTGCTGCGCTACCCAAAGTAAGCCGCCGATAACCTTTTTGGCTGCCTATCAACAGCATCCTTCTGCAACCCGTAAGCTCTGATTCTAAGATGAAGCTGAGCCACGGCGGCCAAAAATCTTACGGTTTGCGCTGGCGTAAGAATCTCCGCCACTTTCAACGCCGTTTCTCTTCTAAAAAAATCAGCACTCGCCAGCACCGACTGAAACGCCGCTTTCAACGCCTCCATTTCGGTCCCACCAGTAACGCCGTCGTGGCCCTGCCTCCGGAAAAACTCCAGCAACGGCGGCGCCGCCACTTTTTCTTGAATCTTCGCTAAGTCATTGTTTAGCATCCGCTCTTCGACCTTCACGTCTTCCCTCAGCCGCCCAATTCTCAACACTTGATCGTCCCACAAGTCGTTTATGGACTCGTTGACGAGCCGGAAAATCAGGCCCGGCCGGAATCCGCCGATCCACAACAGACTCTGCTCGTAGGTGGTGAACCAAGTGGGGGAAAAAACGAGAAAAATATCCCTTTGGGCAATTCTAGATTTTTTCTCGTAATATTCCTCGTAGTGGCTGAGGGTTCGAGAAATTAAATCATCGAGATCGCCGTTGTCCGCAGCGTCGTCGGGATGGCGGCGCGTGGCTGTCAGAAGCTCGTCGAGATATTGTTGTTGGCGGAGAAGCCAGCCTTCAAAAAATGCTGTGAATGAGTCAACATTGTAATCGTCCCCTGGCATTTACAGAGAAATACAGAGAGACAAAAGGAGGTGTGGCGAACTCAAGGCTGATTCAAGAGAGACAGAAACAGAGAATTTTATGGGATTTTTTTTTTTTTTCTTTTTGTTTTTTTTTTGGGTGTCAAGATTTTGAGATTTATGTCTCTATATGTTACAGTTATGAAAGGAAACTTTGGGAGAACACTTTGCTTA

Coding sequence (CDS)

ATGGATCGAACACAGATAGATCTGTTAGGGCTGCCGATCTTTCTGCTTTTCACTGATATCGTGAATCTTTTTACTCCCCCGCCTCCTAAACCGGCCAATCACTCTCCACCTCGAGTTCACTATCAGCCTAAATCTGAATCAGTCATCCAGGAACCGATTCAATTTCCTACGGAGAAACAGAGCGGAATCGGAGGAATTGGCCATGGCAGCGTTATCAATATCAATTTCTACGTTTCTTGTTCTTCAGAGGAACTGCAATAA

Protein sequence

MDRTQIDLLGLPIFLLFTDIVNLFTPPPPKPANHSPPRVHYQPKSESVIQEPIQFPTEKQSGIGGIGHGSVININFYVSCSSEELQ

Homology

[Close]

BLAST of CmoCh06G002170.1 vs. ExPASy Swiss-Prot
Match: Q9STZ2 (SelT-like protein OS=Arabidopsis thaliana OX=3702 GN=At3g47300 PE=2 SV=2)

HSP 1 Score: 79.3 bits (194), Expect = 2.3e-14
Identity = 40/81 (49.38%), Postives = 53/81 (65.43%), Query Frame = 0


Query: 1  MDRTQIDLLGLPIFLLFTDIVNLFTPPPPKPANHSPPRVHYQPKSESVIQEPIQFPTEKQ 60
          MD+TQ+ LLGLPIFLL +D+ NLFTPPPPK  + SPP           I E + FP +K 
Sbjct: 1  MDKTQLILLGLPIFLLCSDLFNLFTPPPPKSQHQSPPS----------ISETLDFPAQKS 60

Query: 61 SGIGGIGHGSVININFYVSCS 82
          +   G+G+G+ + INF +SCS
Sbjct: 61 T---GVGYGNTVEINFCISCS 68

[Close]

BLAST of CmoCh06G002170.1 vs. ExPASy TrEMBL
Match: A0A6J1F6D5 (selT-like protein OS=Cucurbita moschata OX=3662 GN=LOC111429630 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 6.0e-42
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MDRTQIDLLGLPIFLLFTDIVNLFTPPPPKPANHSPPRVHYQPKSESVIQEPIQFPTEKQ 60
          MDRTQIDLLGLPIFLLFTDIVNLFTPPPPKPANHSPPRVHYQPKSESVIQEPIQFPTEKQ
Sbjct: 1  MDRTQIDLLGLPIFLLFTDIVNLFTPPPPKPANHSPPRVHYQPKSESVIQEPIQFPTEKQ 60

Query: 61 SGIGGIGHGSVININFYVSCSSEELQ 87
          SGIGGIGHGSVININFYVSCSSEELQ
Sbjct: 61 SGIGGIGHGSVININFYVSCSSEELQ 86

[Close]

BLAST of CmoCh06G002170.1 vs. ExPASy TrEMBL
Match: A0A6J1F5S6 (selT-like protein OS=Cucurbita moschata OX=3662 GN=LOC111442401 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 5.1e-33
Identity = 71/81 (87.65%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MDRTQIDLLGLPIFLLFTDIVNLFTPPPPKPANHSPPRVHYQPKSESVIQEPIQFPTEKQ 60
          MDRTQI LLGLPIFLLFTDIVNLFTPPPPKP NH PPRVHYQPKS+ VIQEP++FPTEK+
Sbjct: 1  MDRTQIVLLGLPIFLLFTDIVNLFTPPPPKPVNHPPPRVHYQPKSQPVIQEPLEFPTEKR 60

Query: 61 SGIGGIGHGSVININFYVSCS 82
          SGIGGIG GSVININF VSCS
Sbjct: 61 SGIGGIGQGSVININFCVSCS 81

[Close]

BLAST of CmoCh06G002170.1 vs. ExPASy TrEMBL
Match: A0A6J1IZR1 (selT-like protein OS=Cucurbita maxima OX=3661 GN=LOC111482133 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 4.3e-32
Identity = 70/81 (86.42%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 1  MDRTQIDLLGLPIFLLFTDIVNLFTPPPPKPANHSPPRVHYQPKSESVIQEPIQFPTEKQ 60
          MDRTQI LLGLPIFLLFTDIVNLFTPPPPKP NH PPRVHYQPKS+ VIQEP++FPTEK+
Sbjct: 1  MDRTQIVLLGLPIFLLFTDIVNLFTPPPPKPVNHPPPRVHYQPKSQPVIQEPLEFPTEKR 60

Query: 61 SGIGGIGHGSVININFYVSCS 82
          SGIG IG GSVININF VSCS
Sbjct: 61 SGIGEIGQGSVININFCVSCS 81

[Close]

BLAST of CmoCh06G002170.1 vs. ExPASy TrEMBL
Match: E5GBE6 (Selenoprotein t OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.7e-31
Identity = 71/82 (86.59%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 1  MDRTQIDLLGLPIFLLFTDIVNLFTPPPPKP-ANHSPPRVHYQPKSESVIQEPIQFPTEK 60
          MDRT+I LLGLPIFLLFTDIVNLFTPPPPKP ANH PPRVHYQPKS+SVIQEP++FPTEK
Sbjct: 1  MDRTRIVLLGLPIFLLFTDIVNLFTPPPPKPAANHPPPRVHYQPKSQSVIQEPLEFPTEK 60

Query: 61 QSGIGGIGHGSVININFYVSCS 82
          +S IGGIG GSVININF VSCS
Sbjct: 61 RSVIGGIGQGSVININFCVSCS 82

[Close]

BLAST of CmoCh06G002170.1 vs. ExPASy TrEMBL
Match: A0A5D3DMW2 (SelT-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00710 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.7e-31
Identity = 71/82 (86.59%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 1  MDRTQIDLLGLPIFLLFTDIVNLFTPPPPKP-ANHSPPRVHYQPKSESVIQEPIQFPTEK 60
          MDRT+I LLGLPIFLLFTDIVNLFTPPPPKP ANH PPRVHYQPKS+SVIQEP++FPTEK
Sbjct: 1  MDRTRIVLLGLPIFLLFTDIVNLFTPPPPKPAANHPPPRVHYQPKSQSVIQEPLEFPTEK 60

Query: 61 QSGIGGIGHGSVININFYVSCS 82
          +S IGGIG GSVININF VSCS
Sbjct: 61 RSVIGGIGQGSVININFCVSCS 82

[Close]

BLAST of CmoCh06G002170.1 vs. TAIR 10
Match: AT5G58640.1 (Selenoprotein, Rdx type )

HSP 1 Score: 95.1 bits (235), Expect = 2.9e-20
Identity = 46/85 (54.12%), Postives = 61/85 (71.76%), Query Frame = 0


Query: 1  MDRTQIDLLGLPIFLLFTDIVNLFTPPPPKP---ANHSPPRVHYQPKSESVIQEPIQFPT 60
          MDR Q+ LLGLPIFL  +D+ NLFTPPPPKP     H PP + +Q +  ++I E + FP+
Sbjct: 1  MDRAQLILLGLPIFLFCSDLFNLFTPPPPKPQPHRPHQPPHIPHQHRPNAIIPETLDFPS 60

Query: 61 EKQSGIGG-IGHGSVININFYVSCS 82
          +K SG+GG IG+G+ + INF VSCS
Sbjct: 61 QKTSGLGGAIGYGNTVEINFCVSCS 85

[Close]

BLAST of CmoCh06G002170.1 vs. TAIR 10
Match: AT5G58640.2 (Selenoprotein, Rdx type )

HSP 1 Score: 88.2 bits (217), Expect = 3.5e-18
Identity = 45/85 (52.94%), Postives = 60/85 (70.59%), Query Frame = 0


Query: 1  MDRTQIDLLGLPIFLLFTDIVNLFTPPPPKP---ANHSPPRVHYQPKSESVIQEPIQFPT 60
          MDR Q+ LLGLPIFL  +D+ NLFTPPPPKP     H PP + +Q +  ++I E + FP+
Sbjct: 1  MDRAQLILLGLPIFLFCSDLFNLFTPPPPKPQPHRPHQPPHIPHQHRPNAIIPETLDFPS 60

Query: 61 EKQSGIGG-IGHGSVININFYVSCS 82
          +  SG+GG IG+G+ + INF VSCS
Sbjct: 61 Q-TSGLGGAIGYGNTVEINFCVSCS 84

[Close]

BLAST of CmoCh06G002170.1 vs. TAIR 10
Match: AT3G47300.1 (SELT-like protein precursor )

HSP 1 Score: 79.3 bits (194), Expect = 1.6e-15
Identity = 40/81 (49.38%), Postives = 53/81 (65.43%), Query Frame = 0


Query: 1  MDRTQIDLLGLPIFLLFTDIVNLFTPPPPKPANHSPPRVHYQPKSESVIQEPIQFPTEKQ 60
          MD+TQ+ LLGLPIFLL +D+ NLFTPPPPK  + SPP           I E + FP +K 
Sbjct: 1  MDKTQLILLGLPIFLLCSDLFNLFTPPPPKSQHQSPPS----------ISETLDFPAQKS 60

Query: 61 SGIGGIGHGSVININFYVSCS 82
          +   G+G+G+ + INF +SCS
Sbjct: 61 T---GVGYGNTVEINFCISCS 68

The following BLAST results are available for this feature:

BLAST of CmoCh06G002170.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STZ2	2.3e-14	49.38	SelT-like protein OS=Arabidopsis thaliana OX=3702 GN=At3g47300 PE=2 SV=2	[more]

BLAST of CmoCh06G002170.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F6D5	6.0e-42	100.00	selT-like protein OS=Cucurbita moschata OX=3662 GN=LOC111429630 PE=4 SV=1	[more]
A0A6J1F5S6	5.1e-33	87.65	selT-like protein OS=Cucurbita moschata OX=3662 GN=LOC111442401 PE=4 SV=1	[more]
A0A6J1IZR1	4.3e-32	86.42	selT-like protein OS=Cucurbita maxima OX=3661 GN=LOC111482133 PE=4 SV=1	[more]
E5GBE6	3.7e-31	86.59	Selenoprotein t OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A5D3DMW2	3.7e-31	86.59	SelT-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00...	[more]

BLAST of CmoCh06G002170.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58640.1	2.9e-20	54.12	Selenoprotein, Rdx type	[more]
AT5G58640.2	3.5e-18	52.94	Selenoprotein, Rdx type	[more]
AT3G47300.1	1.6e-15	49.38	SELT-like protein precursor	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..47
None	No IPR available	PANTHER	PTHR13544:SF12	SELT-LIKE PROTEIN	coord: 1..81
IPR019389	Selenoprotein T	PANTHER	PTHR13544	SELENOPROTEIN T	coord: 1..81

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh06G002170	CmoCh06G002170	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G002170.1:exon:8051	CmoCh06G002170.1:exon:8051	exon
CmoCh06G002170.1:exon:8050	CmoCh06G002170.1:exon:8050	exon
CmoCh06G002170.1:exon:8049	CmoCh06G002170.1:exon:8049	exon
CmoCh06G002170.1:exon:8048	CmoCh06G002170.1:exon:8048	exon
CmoCh06G002170.1:exon:8047	CmoCh06G002170.1:exon:8047	exon
CmoCh06G002170.1:exon:8046	CmoCh06G002170.1:exon:8046	exon
CmoCh06G002170.1:exon:8045	CmoCh06G002170.1:exon:8045	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G002170.1:three_prime_utr	CmoCh06G002170.1:three_prime_utr_5	three_prime_UTR
CmoCh06G002170.1:three_prime_utr	CmoCh06G002170.1:three_prime_utr_4	three_prime_UTR
CmoCh06G002170.1:three_prime_utr	CmoCh06G002170.1:three_prime_utr_3	three_prime_UTR
CmoCh06G002170.1:three_prime_utr	CmoCh06G002170.1:three_prime_utr_2	three_prime_UTR
CmoCh06G002170.1:three_prime_utr	CmoCh06G002170.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G002170.1:cds	CmoCh06G002170.1:cds_3	CDS
CmoCh06G002170.1:cds	CmoCh06G002170.1:cds_2	CDS
CmoCh06G002170.1:cds	CmoCh06G002170.1:cds	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G002170.1:five_prime_utr	CmoCh06G002170.1:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh06G002170.1	CmoCh06G002170.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0098869	cellular oxidant detoxification
cellular_component	GO:0005789	endoplasmic reticulum membrane
molecular_function	GO:0004791	thioredoxin-disulfide reductase activity