CmoCh06G001070.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G001070.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Calcium load-activated calcium channel
Location	Cmo_Chr06: 607844 .. 608419 (+)
Sequence length	576
RNA-Seq Expression	CmoCh06G001070.1
Synteny	CmoCh06G001070.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCACGATCCCCCTTTTCTCCTCCTTCCGATACTCCGACAGCCTCACGGTGGTCGGAATCTCCGTCTGCACCGCCATCGTGTGCGAGGCCATCTCATGGCTTCTCATCTACCGCACCAACTCCTACAAAACCCTACGATCCTCCATCGACAAGGCTGCCAAAAAGCTCGAGACCATGAAGACCGACAGCTCCAAAATCACCGTCAAGAAGTCCAAAACCAAGAAGATCGATCGCGTCGAGACCAGTCTCAAGGAATCCAGCCGCGACCTCTCACTCTTTAAGTTCAAATCCGGTGCCGTTGTTGCCCTCGTTCTGTTCGTCGTCTTTGGATTGCTCAATTCGCTCTTCGAAGGCAAGGTTGTTGCCAAATTGCCGTTTAAGCCTTTCGGACTGGTGATGAAGATGAGCCACCGAGGGTTACAGGGCGATGATCCTACCGATTGCGCTATGGCGTTTCTGTACTTCCTCTGTTCGATTAGCATTAGGACCAATTTGCAGAAGTTCTTGGGATTCTCGCCGCCAAGGGGCGCCGGCGCCGGCTTGTTCCCGATGCCAGATCCTAAGACGAACTGA

mRNA sequence

ATGGCCACGATCCCCCTTTTCTCCTCCTTCCGATACTCCGACAGCCTCACGGTGGTCGGAATCTCCGTCTGCACCGCCATCGTGTGCGAGGCCATCTCATGGCTTCTCATCTACCGCACCAACTCCTACAAAACCCTACGATCCTCCATCGACAAGGCTGCCAAAAAGCTCGAGACCATGAAGACCGACAGCTCCAAAATCACCGTCAAGAAGTCCAAAACCAAGAAGATCGATCGCGTCGAGACCAGTCTCAAGGAATCCAGCCGCGACCTCTCACTCTTTAAGTTCAAATCCGGTGCCGTTGTTGCCCTCGTTCTGTTCGTCGTCTTTGGATTGCTCAATTCGCTCTTCGAAGGCAAGGTTGTTGCCAAATTGCCGTTTAAGCCTTTCGGACTGGTGATGAAGATGAGCCACCGAGGGTTACAGGGCGATGATCCTACCGATTGCGCTATGGCGTTTCTGTACTTCCTCTGTTCGATTAGCATTAGGACCAATTTGCAGAAGTTCTTGGGATTCTCGCCGCCAAGGGGCGCCGGCGCCGGCTTGTTCCCGATGCCAGATCCTAAGACGAACTGA

Coding sequence (CDS)

ATGGCCACGATCCCCCTTTTCTCCTCCTTCCGATACTCCGACAGCCTCACGGTGGTCGGAATCTCCGTCTGCACCGCCATCGTGTGCGAGGCCATCTCATGGCTTCTCATCTACCGCACCAACTCCTACAAAACCCTACGATCCTCCATCGACAAGGCTGCCAAAAAGCTCGAGACCATGAAGACCGACAGCTCCAAAATCACCGTCAAGAAGTCCAAAACCAAGAAGATCGATCGCGTCGAGACCAGTCTCAAGGAATCCAGCCGCGACCTCTCACTCTTTAAGTTCAAATCCGGTGCCGTTGTTGCCCTCGTTCTGTTCGTCGTCTTTGGATTGCTCAATTCGCTCTTCGAAGGCAAGGTTGTTGCCAAATTGCCGTTTAAGCCTTTCGGACTGGTGATGAAGATGAGCCACCGAGGGTTACAGGGCGATGATCCTACCGATTGCGCTATGGCGTTTCTGTACTTCCTCTGTTCGATTAGCATTAGGACCAATTTGCAGAAGTTCTTGGGATTCTCGCCGCCAAGGGGCGCCGGCGCCGGCTTGTTCCCGATGCCAGATCCTAAGACGAACTGA

Protein sequence

MATIPLFSSFRYSDSLTVVGISVCTAIVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETMKTDSSKITVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGAGLFPMPDPKTN

Homology

[Close]

BLAST of CmoCh06G001070.1 vs. ExPASy Swiss-Prot
Match: Q3T0N3 (Calcium load-activated calcium channel OS=Bos taurus OX=9913 GN=TMCO1 PE=2 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 5.1e-38
Identity = 84/182 (46.15%), Postives = 121/182 (66.48%), Query Frame = 0


Query: 9   SFRYSDSLTVVGISVCTAIVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETMKTDSSKIT 68
           S  ++D+L +V ISVCTA++ E I+W+L+YRT+ YK L++ ++K +KKLE  K   ++  
Sbjct: 2   STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITESA 61

Query: 69  VKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFK 128
            ++ K KKI+R E  LK ++RDLS+ + KS   +      + G+ NS+F+G+VVAKLPF 
Sbjct: 62  GRQQK-KKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFT 121

Query: 129 PFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGA--GAGLFPMP 188
           P   +  +SHR L GDD TDC+  FLY LC++SIR N+QK LG +P R A   AG F  P
Sbjct: 122 PLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGP 181

[Close]

BLAST of CmoCh06G001070.1 vs. ExPASy Swiss-Prot
Match: Q9UM00 (Calcium load-activated calcium channel OS=Homo sapiens OX=9606 GN=TMCO1 PE=1 SV=2)

HSP 1 Score: 159.1 bits (401), Expect = 5.1e-38
Identity = 84/182 (46.15%), Postives = 121/182 (66.48%), Query Frame = 0


Query: 9   SFRYSDSLTVVGISVCTAIVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETMKTDSSKIT 68
           S  ++D+L +V ISVCTA++ E I+W+L+YRT+ YK L++ ++K +KKLE  K   ++  
Sbjct: 53  STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITESA 112

Query: 69  VKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFK 128
            ++ K KKI+R E  LK ++RDLS+ + KS   +      + G+ NS+F+G+VVAKLPF 
Sbjct: 113 GRQQK-KKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFT 172

Query: 129 PFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGA--GAGLFPMP 188
           P   +  +SHR L GDD TDC+  FLY LC++SIR N+QK LG +P R A   AG F  P
Sbjct: 173 PLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGP 232

[Close]

BLAST of CmoCh06G001070.1 vs. ExPASy Swiss-Prot
Match: Q921L3 (Calcium load-activated calcium channel OS=Mus musculus OX=10090 GN=Tmco1 PE=1 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 5.1e-38
Identity = 84/182 (46.15%), Postives = 121/182 (66.48%), Query Frame = 0


Query: 9   SFRYSDSLTVVGISVCTAIVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETMKTDSSKIT 68
           S  ++D+L +V ISVCTA++ E I+W+L+YRT+ YK L++ ++K +KKLE  K   ++  
Sbjct: 2   STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITESA 61

Query: 69  VKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFK 128
            ++ K KKI+R E  LK ++RDLS+ + KS   +      + G+ NS+F+G+VVAKLPF 
Sbjct: 62  GRQQK-KKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFT 121

Query: 129 PFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGA--GAGLFPMP 188
           P   +  +SHR L GDD TDC+  FLY LC++SIR N+QK LG +P R A   AG F  P
Sbjct: 122 PLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGP 181

[Close]

BLAST of CmoCh06G001070.1 vs. ExPASy Swiss-Prot
Match: C5HGF3 (Calcium load-activated calcium channel OS=Sus scrofa OX=9823 GN=TMCO1 PE=2 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 5.1e-38
Identity = 84/182 (46.15%), Postives = 121/182 (66.48%), Query Frame = 0


Query: 9   SFRYSDSLTVVGISVCTAIVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETMKTDSSKIT 68
           S  ++D+L +V ISVCTA++ E I+W+L+YRT+ YK L++ ++K +KKLE  K   ++  
Sbjct: 2   STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITESA 61

Query: 69  VKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFK 128
            ++ K KKI+R E  LK ++RDLS+ + KS   +      + G+ NS+F+G+VVAKLPF 
Sbjct: 62  GRQQK-KKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFT 121

Query: 129 PFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGA--GAGLFPMP 188
           P   +  +SHR L GDD TDC+  FLY LC++SIR N+QK LG +P R A   AG F  P
Sbjct: 122 PLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGP 181

[Close]

BLAST of CmoCh06G001070.1 vs. ExPASy Swiss-Prot
Match: Q5R9B0 (Calcium load-activated calcium channel OS=Pongo abelii OX=9601 GN=TMCO1 PE=2 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 5.1e-38
Identity = 84/182 (46.15%), Postives = 121/182 (66.48%), Query Frame = 0


Query: 9   SFRYSDSLTVVGISVCTAIVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETMKTDSSKIT 68
           S  ++D+L +V ISVCTA++ E I+W+L+YRT+ YK L++ ++K +KKLE  K   ++  
Sbjct: 2   STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITESA 61

Query: 69  VKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFK 128
            ++ K KKI+R E  LK ++RDLS+ + KS   +      + G+ NS+F+G+VVAKLPF 
Sbjct: 62  GRQQK-KKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFT 121

Query: 129 PFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGA--GAGLFPMP 188
           P   +  +SHR L GDD TDC+  FLY LC++SIR N+QK LG +P R A   AG F  P
Sbjct: 122 PLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGP 181

[Close]

BLAST of CmoCh06G001070.1 vs. ExPASy TrEMBL
Match: A0A6J1DAX6 (Calcium load-activated calcium channel OS=Momordica charantia OX=3673 GN=LOC111019313 PE=3 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 6.5e-97
Identity = 188/191 (98.43%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 1   MATIPLFSSFRYSDSLTVVGISVCTAIVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETM 60
           MATIPLFSSFRYSDSLTVVGISVCTA+VCEAISWLLIYRTNSYKTLRSSIDKAAKKLETM
Sbjct: 1   MATIPLFSSFRYSDSLTVVGISVCTAVVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETM 60

Query: 61  KTDSSKITVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120
           KTDSSKI+VKKSKTKKIDRVETSLKES+RDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK
Sbjct: 61  KTDSSKISVKKSKTKKIDRVETSLKESNRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120

Query: 121 VVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA 180
           VVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA
Sbjct: 121 VVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA 180

Query: 181 GLFPMPDPKTN 192
           GLFPMPDPKTN
Sbjct: 181 GLFPMPDPKTN 191

[Close]

BLAST of CmoCh06G001070.1 vs. ExPASy TrEMBL
Match: A0A0A0LGX0 (Calcium load-activated calcium channel OS=Cucumis sativus OX=3659 GN=Csa_3G799650 PE=3 SV=1)

HSP 1 Score: 362.5 bits (929), Expect = 1.1e-96
Identity = 186/191 (97.38%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 1   MATIPLFSSFRYSDSLTVVGISVCTAIVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETM 60
           MATIPLFSSFRYSDSL+VVGISVCTA++CEAISW+LIYRTNSYKTLRSSIDKAAKKLETM
Sbjct: 1   MATIPLFSSFRYSDSLSVVGISVCTAVICEAISWVLIYRTNSYKTLRSSIDKAAKKLETM 60

Query: 61  KTDSSKITVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120
           KTDSSKITVKKSKTKKIDR+ETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK
Sbjct: 61  KTDSSKITVKKSKTKKIDRIETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120

Query: 121 VVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA 180
           VVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA
Sbjct: 121 VVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA 180

Query: 181 GLFPMPDPKTN 192
           GLFPMPDPKTN
Sbjct: 181 GLFPMPDPKTN 191

[Close]

BLAST of CmoCh06G001070.1 vs. ExPASy TrEMBL
Match: A0A5A7TQC2 (Calcium load-activated calcium channel OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005230 PE=3 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 2.5e-96
Identity = 185/191 (96.86%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 1   MATIPLFSSFRYSDSLTVVGISVCTAIVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETM 60
           MATIPLFSSFRYSDSLTV+GISVCTA++CEAISW+LIYRTNSYKTLRSSIDKAAKKLETM
Sbjct: 1   MATIPLFSSFRYSDSLTVLGISVCTAVICEAISWVLIYRTNSYKTLRSSIDKAAKKLETM 60

Query: 61  KTDSSKITVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120
           KTDSSKITVKKSKTKKIDR+ETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK
Sbjct: 61  KTDSSKITVKKSKTKKIDRIETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120

Query: 121 VVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA 180
           VVAKLPFKPFGLVMKMSHRGLQG+DPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA
Sbjct: 121 VVAKLPFKPFGLVMKMSHRGLQGEDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA 180

Query: 181 GLFPMPDPKTN 192
           GLFPMPDPKTN
Sbjct: 181 GLFPMPDPKTN 191

[Close]

BLAST of CmoCh06G001070.1 vs. ExPASy TrEMBL
Match: A0A1S3B750 (Calcium load-activated calcium channel OS=Cucumis melo OX=3656 GN=LOC103486745 PE=3 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 2.5e-96
Identity = 185/191 (96.86%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 1   MATIPLFSSFRYSDSLTVVGISVCTAIVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETM 60
           MATIPLFSSFRYSDSLTV+GISVCTA++CEAISW+LIYRTNSYKTLRSSIDKAAKKLETM
Sbjct: 1   MATIPLFSSFRYSDSLTVLGISVCTAVICEAISWVLIYRTNSYKTLRSSIDKAAKKLETM 60

Query: 61  KTDSSKITVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120
           KTDSSKITVKKSKTKKIDR+ETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK
Sbjct: 61  KTDSSKITVKKSKTKKIDRIETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120

Query: 121 VVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA 180
           VVAKLPFKPFGLVMKMSHRGLQG+DPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA
Sbjct: 121 VVAKLPFKPFGLVMKMSHRGLQGEDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA 180

Query: 181 GLFPMPDPKTN 192
           GLFPMPDPKTN
Sbjct: 181 GLFPMPDPKTN 191

[Close]

BLAST of CmoCh06G001070.1 vs. ExPASy TrEMBL
Match: A0A6J1J172 (Calcium load-activated calcium channel OS=Cucurbita maxima OX=3661 GN=LOC111481756 PE=3 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 4.0e-94
Identity = 185/193 (95.85%), Postives = 189/193 (97.93%), Query Frame = 0


Query: 1   MATIPLFSSFRYSDSLTVVGISVCTAIVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETM 60
           MATIPLFSSFRYSDSLTVVGISVCTA++CEAISW+LIYRTNSYKTLRSSIDKAAKKLETM
Sbjct: 1   MATIPLFSSFRYSDSLTVVGISVCTAVICEAISWILIYRTNSYKTLRSSIDKAAKKLETM 60

Query: 61  KTDSSKITVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120
           KTD+SKI VKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK
Sbjct: 61  KTDTSKINVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120

Query: 121 VVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAG- 180
           VVAKLPFKPFGLVMKMSHRGL GDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAG 
Sbjct: 121 VVAKLPFKPFGLVMKMSHRGLLGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA 180

Query: 181 -AGLFPMPDPKTN 192
            AGLFPMPDPKTN
Sbjct: 181 AAGLFPMPDPKTN 193

[Close]

BLAST of CmoCh06G001070.1 vs. TAIR 10
Match: AT3G12030.1 (Protein of unknown function DUF106, transmembrane )

HSP 1 Score: 313.9 bits (803), Expect = 8.7e-86
Identity = 164/193 (84.97%), Postives = 179/193 (92.75%), Query Frame = 0


Query: 3   TIPLFSSFRYSDSLTVVGISVCTAIVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETMKT 62
           TIPLF+SF+Y+DSLTVVGIS CTA+VCEAISW+LIYRT+SYK+L+ SIDKA KKLETMKT
Sbjct: 4   TIPLFASFKYADSLTVVGISFCTALVCEAISWILIYRTSSYKSLKYSIDKATKKLETMKT 63

Query: 63  D--SSKITVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 122
           +  SSK+++KKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK
Sbjct: 64  ENPSSKLSIKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 123

Query: 123 VVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGA-- 182
           VVAKLPF P  +V KMSHRGL+GDDPTDC+MAFLY LCSISIRTNLQKFLGFSPPRGA  
Sbjct: 124 VVAKLPFHPITIVKKMSHRGLKGDDPTDCSMAFLYLLCSISIRTNLQKFLGFSPPRGAAG 183

Query: 183 GAGLFPMPDPKTN 192
             GLFPMPDPKTN
Sbjct: 184 AGGLFPMPDPKTN 196

[Close]

BLAST of CmoCh06G001070.1 vs. TAIR 10
Match: AT5G06660.1 (Protein of unknown function DUF106, transmembrane )

HSP 1 Score: 311.2 bits (796), Expect = 5.7e-85
Identity = 167/196 (85.20%), Postives = 181/196 (92.35%), Query Frame = 0


Query: 1   MAT-IPLFSSFRYSDSLTVVGISVCTAIVCEAISWLLIYRTNSYKTLRSSIDKAAKKLET 60
           MAT IPLF+SF+Y+DSLTVVGIS CTA+VCEAISW+LIYRT+SYK+L+SSIDKA+KKLET
Sbjct: 1   MATAIPLFASFKYADSLTVVGISFCTALVCEAISWILIYRTSSYKSLKSSIDKASKKLET 60

Query: 61  MKTD--SSKITVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLF 120
           MKTD  SSK+T KKSKTKKIDRVE+SLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLF
Sbjct: 61  MKTDNPSSKLTNKKSKTKKIDRVESSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLF 120

Query: 121 EGKVVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRG 180
           EGKVVAKLPF P  +V KMSHRGL+GDD TDC+MAFLY LCSISIRTNLQKFLGFSPPRG
Sbjct: 121 EGKVVAKLPFHPITIVRKMSHRGLKGDDSTDCSMAFLYLLCSISIRTNLQKFLGFSPPRG 180

Query: 181 A--GAGLFPMPDPKTN 192
           A    GLFPMPDPKTN
Sbjct: 181 AAGAGGLFPMPDPKTN 196

The following BLAST results are available for this feature:

BLAST of CmoCh06G001070.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3T0N3	5.1e-38	46.15	Calcium load-activated calcium channel OS=Bos taurus OX=9913 GN=TMCO1 PE=2 SV=1	[more]
Q9UM00	5.1e-38	46.15	Calcium load-activated calcium channel OS=Homo sapiens OX=9606 GN=TMCO1 PE=1 SV=...	[more]
Q921L3	5.1e-38	46.15	Calcium load-activated calcium channel OS=Mus musculus OX=10090 GN=Tmco1 PE=1 SV...	[more]
C5HGF3	5.1e-38	46.15	Calcium load-activated calcium channel OS=Sus scrofa OX=9823 GN=TMCO1 PE=2 SV=1	[more]
Q5R9B0	5.1e-38	46.15	Calcium load-activated calcium channel OS=Pongo abelii OX=9601 GN=TMCO1 PE=2 SV=...	[more]

BLAST of CmoCh06G001070.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DAX6	6.5e-97	98.43	Calcium load-activated calcium channel OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A0A0LGX0	1.1e-96	97.38	Calcium load-activated calcium channel OS=Cucumis sativus OX=3659 GN=Csa_3G79965...	[more]
A0A5A7TQC2	2.5e-96	96.86	Calcium load-activated calcium channel OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3B750	2.5e-96	96.86	Calcium load-activated calcium channel OS=Cucumis melo OX=3656 GN=LOC103486745 P...	[more]
A0A6J1J172	4.0e-94	95.85	Calcium load-activated calcium channel OS=Cucurbita maxima OX=3661 GN=LOC1114817...	[more]

BLAST of CmoCh06G001070.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G12030.1	8.7e-86	84.97	Protein of unknown function DUF106, transmembrane	[more]
AT5G06660.1	5.7e-85	85.20	Protein of unknown function DUF106, transmembrane	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 43..63
IPR002809	Integral membrane protein EMC3/TMCO1-like	SMART	SM01415	DUF106_2	coord: 14..174 e-value: 2.6E-38 score: 143.3
IPR002809	Integral membrane protein EMC3/TMCO1-like	PFAM	PF01956	EMC3_TMCO1	coord: 16..173 e-value: 3.8E-31 score: 108.1
IPR008559	Calcium load-activated calcium channel	PIRSF	PIRSF023322	UCP023322_TM_coiled-coil	coord: 5..191 e-value: 7.9E-76 score: 251.8
IPR008559	Calcium load-activated calcium channel	PANTHER	PTHR20917	PNAS-RELATED	coord: 1..189

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh06G001070	CmoCh06G001070	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G001070.1:exon:9198	CmoCh06G001070.1:exon:9198	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G001070.1:cds	CmoCh06G001070.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh06G001070.1	CmoCh06G001070.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032469	endoplasmic reticulum calcium ion homeostasis
biological_process	GO:0070588	calcium ion transmembrane transport
cellular_component	GO:0030176	integral component of endoplasmic reticulum membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0005262	calcium channel activity