CmoCh06G000800.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G000800.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	outer envelope pore protein 16-3, chloroplastic/mitochondrial-like
Location	Cmo_Chr06: 482992 .. 486969 (-)
Sequence length	1341
RNA-Seq Expression	CmoCh06G000800.1
Synteny	CmoCh06G000800.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTTTCTGATCTACAATGCTTTTGGAGCTACGATGATCGCACTCGATGTAGTTGTCAATGCAATTCGTCTAGGTTTAGCCTCTGCGGTTCGGTCTGCATGTCATTTTGTCGCGGAAATTCATTTTCATGCTTCTATTTTTGAGGATATAGAGAAATTAGATTGTATTCTGCAGGTGCACGAGTTAGGGGTAGTCGTTTGGGGTTTCCGGCTTGATCTGAACGGTTAAATTTACGAATTGTTCATTATCTAGCGGGTTATTAGTACGTTTGGATCTAGCTGTTCGTAATTCTCTGGATATTAGAAATTCTGCTGAGATAACGTAAAGGAATGGGATGAATACGTAGGAGGGGGGCTATATAATCTAATTAATTTCCATTTAATACAAATGATTTCATTATGAGATAGTCAGAAAAATTTAGATCTTCTTTGGTCGTGGTTATTGAGGTTTGCGTCTTGTTTCTTTTCTTTCTGCAGCTTTGGCCATTGTCAGCAACTTCAAAAATACCCATGGATGCTTCAGAGCGTAGGTACTTGGAGGATGATGATACGTCAATAATGAAAATGATTAAAGGAGCAACTACAGGATTTGTTTCTGGCACCATTTTTGGGACAATTGCTGCCACTTGGTATGATGTACCCCGTGTTGAGAGAAATGTTGCTTTGCCTGGGCTTGTGAGAACCTTGAAAATGATGGGAAACTATGGGATGACGTTTGCTGCTATTGGAGGGGTATACATTGGCGTTGAGCAGCTTGTGCAGAATTATAGAATGAAGAGAGACTTCGTTAATGGAGCTGTAGGTGGTTTTGCAGCTGGAGCATCTGTTCTCGGATACAAAGGTGAAACTTTCTACTCTTTCTAGATCTGGATGCAGTCGCAATTTCTATTCTTTCATTAACAAATGTGAAGAAAGTTTTTTGTATGATTTGTTTCTCTTTCTTTCCGCTTTCCTCTCTTGGAGAATGGGTTAGAATTTTATTTGGCATATTTATGTGAACATATTATAGAATGGGATAAATCCATACCATCCGCAATTTCTATTCTTTCATAAATTGACCCAATATGAACATATTTTCTAATTTTATAGAGGAAAGACTAATAGAGCTATTTTGTTTTACAAAAGTTAACAATAAACTAACAATAGGGATCAATTTTATGCTTTATTGAAAGTTTAAGTACTAAGTATGGATTTTTACAAGTATAGGGACCAAAATGGAACGAAGCCCAAATTATAGGACATAGTTGGTATTACCTTTTCTTTCTGCGTGGTTGGAAGTGTGTTGAGTAGGTTGATTGAACTTGATCTTCATGGGGCCTTCTTGAATATTTTTTCCTTGGCGAGAACAAGGGGCATATTTCACATACTCAATTTATGGATATTACTTCACTTCTATCAAAAGATGATAGGACAGGGTTATAGGATTTTTTCAAGCTACTTAGAATTTTTAAGATTTCTTCGGGCATAGAGATAAATTTGAAAAACATTAGGTTGGTGGTTTTTAATATTCCTTTTGCTGAAGTGAACTCTTGCAAAAAAAAAATGTGGTGCAAGCTTGTAGCTATCCAGTCTCTTACTCGAGGATGATGACCCTTGGGTGATAAATCCATGAAGGTTGGAGTCTTGGAAGCCTGTTATAGAGGTCCTGTATAAGTTGGAAAATGGGAATTTTACCTTTCTAATGGTGGGAGATTGACTCTTTTTGAGGCAGTTCTTACGAACTTACCTACCTATTTCATGTCGAGTTTTTCTATGCTTAGGAAAGGGGCGGTAGGTTTAGGGGAGAAAGTTCAGGAACTGCTTTCGGGATGGTAATTTGATAGTTTTTAAGAATCAAATCAGATTTGACAGGAAGTGTTCTCTAGCATTATAGAAGAATGGAAGATGAGCGGTTACTATCTAGACTAAATTGTCCACGCCTCTAAAGAAAAGGAAAAGGCATTCAACTTGGATACCTCTAGCCAATCATCCAATTCAGAATAATTAACAAAGATCTAACATTGAACACCTATTAAAAGCATTCCAGAATTGTCTAACCATGTTTACCATCACCTTACTGCTTTGGAGCATTGAGTCTCAGAAAAAAGGACAGGAGAGTAAATTATCCAGATGTCATCAAAAAACTTAACTCTATTGCCTTTTCCCACCTAGAATATGGAACCAAAGGCTGCAGGATCCACAATATACCTCAGCTAGGAAATATGGAATCAAGTGCTGCATGGCATTTCTACATGTGGTCATCCACCTGACTTATCCTTCCCACACTTGCTAGTGACATTTTTCTAGTGACATTTTTGTGCCATGGTGCACTGCTTTCTAGAAGGAACCTTCGTATGCATTTGGTTAAAGAAGTGCACTTCCACTTATGTACATTGGTGAAGCTACAATCACCATCCTCGAAAGAGCAAGAGGCTCAACTCTTTATTTCATCTATAGACGACCTCCATCCTAGTCTGCACCTCGCGAAAGAAGTCCCTCTCTTATTTTTATCAATGCTTCGATAAACTGGAGCCTTGAAGACACAAATAACTAGTCTGCATGTTAGCAACCACTCCTTAGTTAGGGCAGAACCATAAATTTGGAGGGCAAAAACTTTCTATGCGAACTTAATTATAGGAGACAAATTAGTGGAGAAGTGCTACATTTTTTTTCTATATATATATATATATATATCATCTGAGACGAACAAGGGAGAGTTTCCAGTCGTCCTATAGTACCTATATCAGCCCTCCGTCAACACTAGAAATTTCTCTATAATTACTTCTTTAATATTGTTGGACTTCATATCAGTAAAAAATAATGATGACGAAGCTCAATAAATGGAAGTAGTATCCAACCTCTACTGTATTACTAGAAATTTCCCTCCAAGAGGGGCGATTTCTCGATCTGGATGTAGTTTCTTGCCATTTCTTGTTAGTTATACTTATAACAAGACCTATCAGTATCACCATATGATTGTAAATTTGAAGTGCCATTCCGATCTTTCTGATCCATTGCTTAGGATGTGGTTCTAATGTGTTTTCTTTTCATGTCTCTAATAAGTTAACTCCCTGTGAAAGTGGTTAATTGATGCCGTTGTTTTGTTTCAGGAAAAAGCATTTCAACAGCCATTTCCGCTGGAGCTGCTTTGGCAGTTACATCTGCATTAATTGATGTTGGTGGTCAAACCACAAGAATTGACAATGGAAAGGAGTACTACCCTTACACCACCAAGAAAAGATCCCACATTGAGTAGCATTAGTAATCTTTGCAGCAATTGGGAAAGAAGATCTTGGCTGGCTTTCTCTTTTGGGTTTCCAGAGATGTAATTATACTCTCAGTTCTCTCGAGTAAGCTGAACAGGGAATGTTGTATGAATAAAGGTACCATCAATTTGTTCAACTCGTTTTTGGTTAGTTTTGGATTTACCACCATTGATCTTTGTTTGGAAGCTTTTCAATTTGGGATAACTGTGAAGGTGGTTGAGAGGAATTGTCAAATGACACTGTTTTTCTTTTCAGGGCAAATAATATGATCCCATCATAATTTTATATCTCACTTTAGAATCCACCTTGAAGTTATCATATGGTCAAGTATTTGGTTTCATCACTATTGTTGTGCTTTAGAAGCCCTCATTTCACCATTCTATTTTGTGAAGCATAAAAGGGCAAAGGAAACATTAAGGAGCAAGTAGTCATGGACTGTTGGAATCATGGACAACACACGTTTTGGACAAGCATAGCCGTGACAGGTCGTTGGTGTGGAATTTAGTGAGAGTGATTTGTTGTAAAGATAAATGTAGAAGAGGGGAGGGACAAGTTCGGGCGAGACACGAGGCTGGAGTCTGCCACTCAATGGGCACCATTTTTTTAATGGGCTTGATCATCTAGGCCCAATAAACTATAATATGTGGGCTTAAAATTTTCCTACTTTATAATGGGCTTAATCATCTAGGCCCAATAAACTCTCCCTCCTAACTATGCAAAGGGTCAACAAC

mRNA sequence

ATGAATTTTCTGATCTACAATGCTTTTGGAGCTACGATGATCGCACTCGATGTAGTTGTCAATGCAATTCGTCTAGGTTTAGCCTCTGCGCTTTGGCCATTGTCAGCAACTTCAAAAATACCCATGGATGCTTCAGAGCGTAGGTACTTGGAGGATGATGATACGTCAATAATGAAAATGATTAAAGGAGCAACTACAGGATTTGTTTCTGGCACCATTTTTGGGACAATTGCTGCCACTTGGTATGATGTACCCCGTGTTGAGAGAAATGTTGCTTTGCCTGGGCTTGTGAGAACCTTGAAAATGATGGGAAACTATGGGATGACGTTTGCTGCTATTGGAGGGGTATACATTGGCGTTGAGCAGCTTGTGCAGAATTATAGAATGAAGAGAGACTTCGTTAATGGAGCTGTAGGTGGTTTTGCAGCTGGAGCATCTGTTCTCGGATACAAAGGAAAAAGCATTTCAACAGCCATTTCCGCTGGAGCTGCTTTGGCAGTTACATCTGCATTAATTGATGTTGGTGGTCAAACCACAAGAATTGACAATGGAAAGGAGTACTACCCTTACACCACCAAGAAAAGATCCCACATTGAGTAGCATTAGTAATCTTTGCAGCAATTGGGAAAGAAGATCTTGGCTGGCTTTCTCTTTTGGGTTTCCAGAGATGTAATTATACTCTCAGTTCTCTCGAGTAAGCTGAACAGGGAATGTTGTATGAATAAAGGTACCATCAATTTGTTCAACTCGTTTTTGGTTAGTTTTGGATTTACCACCATTGATCTTTGTTTGGAAGCTTTTCAATTTGGGATAACTGTGAAGGTGGTTGAGAGGAATTGTCAAATGACACTGTTTTTCTTTTCAGGGCAAATAATATGATCCCATCATAATTTTATATCTCACTTTAGAATCCACCTTGAAGTTATCATATGGTCAAGTATTTGGTTTCATCACTATTGTTGTGCTTTAGAAGCCCTCATTTCACCATTCTATTTTGTGAAGCATAAAAGGGCAAAGGAAACATTAAGGAGCAAGTAGTCATGGACTGTTGGAATCATGGACAACACACGTTTTGGACAAGCATAGCCGTGACAGGTCGTTGGTGTGGAATTTAGTGAGAGTGATTTGTTGTAAAGATAAATGTAGAAGAGGGGAGGGACAAGTTCGGGCGAGACACGAGGCTGGAGTCTGCCACTCAATGGGCACCATTTTTTTAATGGGCTTGATCATCTAGGCCCAATAAACTATAATATGTGGGCTTAAAATTTTCCTACTTTATAATGGGCTTAATCATCTAGGCCCAATAAACTCTCCCTCCTAACTATGCAAAGGGTCAACAAC

Coding sequence (CDS)

ATGAATTTTCTGATCTACAATGCTTTTGGAGCTACGATGATCGCACTCGATGTAGTTGTCAATGCAATTCGTCTAGGTTTAGCCTCTGCGCTTTGGCCATTGTCAGCAACTTCAAAAATACCCATGGATGCTTCAGAGCGTAGGTACTTGGAGGATGATGATACGTCAATAATGAAAATGATTAAAGGAGCAACTACAGGATTTGTTTCTGGCACCATTTTTGGGACAATTGCTGCCACTTGGTATGATGTACCCCGTGTTGAGAGAAATGTTGCTTTGCCTGGGCTTGTGAGAACCTTGAAAATGATGGGAAACTATGGGATGACGTTTGCTGCTATTGGAGGGGTATACATTGGCGTTGAGCAGCTTGTGCAGAATTATAGAATGAAGAGAGACTTCGTTAATGGAGCTGTAGGTGGTTTTGCAGCTGGAGCATCTGTTCTCGGATACAAAGGAAAAAGCATTTCAACAGCCATTTCCGCTGGAGCTGCTTTGGCAGTTACATCTGCATTAATTGATGTTGGTGGTCAAACCACAAGAATTGACAATGGAAAGGAGTACTACCCTTACACCACCAAGAAAAGATCCCACATTGAGTAG

Protein sequence

MNFLIYNAFGATMIALDVVVNAIRLGLASALWPLSATSKIPMDASERRYLEDDDTSIMKMIKGATTGFVSGTIFGTIAATWYDVPRVERNVALPGLVRTLKMMGNYGMTFAAIGGVYIGVEQLVQNYRMKRDFVNGAVGGFAAGASVLGYKGKSISTAISAGAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE

Homology

[Close]

BLAST of CmoCh06G000800.1 vs. ExPASy Swiss-Prot
Match: O48528 (Outer envelope pore protein 16-3, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=OEP163 PE=1 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 2.1e-63
Identity = 118/158 (74.68%), Postives = 138/158 (87.34%), Query Frame = 0


Query: 42  MDASERRYLEDDDTSIMKMIKGATTGFVSGTIFGTIAATWYDVPRVERNVALPGLVRTLK 101
           MD +E RYLE++D  +MK IKG+ TGF +GTI+GTI ATW DVPRVERNVALPGL+RTLK
Sbjct: 1   MDPAEMRYLEEEDGPLMKTIKGSITGFGAGTIYGTILATWKDVPRVERNVALPGLIRTLK 60

Query: 102 MMGNYGMTFAAIGGVYIGVEQLVQNYRMKRDFVNGAVGGFAAGASVLGYKGKSISTAISA 161
           MMG +G+TFAAIGGVYIGVEQLVQN+R KRDF NGA+GGF AGASVLGY+ +SI TAI+A
Sbjct: 61  MMGTHGLTFAAIGGVYIGVEQLVQNFRSKRDFYNGAIGGFVAGASVLGYRARSIPTAIAA 120

Query: 162 GAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 200
           GA LAVTSALID GGQTTR+DNG+EYYPYT +KR+  +
Sbjct: 121 GATLAVTSALIDSGGQTTRVDNGREYYPYTVEKRAEAD 158

[Close]

BLAST of CmoCh06G000800.1 vs. ExPASy TrEMBL
Match: A0A6J1G9D0 (outer envelope pore protein 16-3, chloroplastic/mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111451994 PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 4.0e-81
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 42  MDASERRYLEDDDTSIMKMIKGATTGFVSGTIFGTIAATWYDVPRVERNVALPGLVRTLK 101
           MDASERRYLEDDDTSIMKMIKGATTGFVSGTIFGTIAATWYDVPRVERNVALPGLVRTLK
Sbjct: 1   MDASERRYLEDDDTSIMKMIKGATTGFVSGTIFGTIAATWYDVPRVERNVALPGLVRTLK 60

Query: 102 MMGNYGMTFAAIGGVYIGVEQLVQNYRMKRDFVNGAVGGFAAGASVLGYKGKSISTAISA 161
           MMGNYGMTFAAIGGVYIGVEQLVQNYRMKRDFVNGAVGGFAAGASVLGYKGKSISTAISA
Sbjct: 61  MMGNYGMTFAAIGGVYIGVEQLVQNYRMKRDFVNGAVGGFAAGASVLGYKGKSISTAISA 120

Query: 162 GAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 200
           GAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE
Sbjct: 121 GAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 158

[Close]

BLAST of CmoCh06G000800.1 vs. ExPASy TrEMBL
Match: A0A6J1I3G7 (outer envelope pore protein 16-3, chloroplastic/mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111470193 PE=4 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 5.8e-80
Identity = 156/158 (98.73%), Postives = 156/158 (98.73%), Query Frame = 0


Query: 42  MDASERRYLEDDDTSIMKMIKGATTGFVSGTIFGTIAATWYDVPRVERNVALPGLVRTLK 101
           MDASERRYLEDDDTSIMK IKGATTGFVSGTIFGTIAATWYDVPRVERNVALPGLVRTLK
Sbjct: 1   MDASERRYLEDDDTSIMKTIKGATTGFVSGTIFGTIAATWYDVPRVERNVALPGLVRTLK 60

Query: 102 MMGNYGMTFAAIGGVYIGVEQLVQNYRMKRDFVNGAVGGFAAGASVLGYKGKSISTAISA 161
           MMGNYGMTFAAIGGVYIGVEQLVQNYRMKRDFVNGAVGGFAAGASVLGYKGKSISTAISA
Sbjct: 61  MMGNYGMTFAAIGGVYIGVEQLVQNYRMKRDFVNGAVGGFAAGASVLGYKGKSISTAISA 120

Query: 162 GAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 200
           G ALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE
Sbjct: 121 GVALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 158

[Close]

BLAST of CmoCh06G000800.1 vs. ExPASy TrEMBL
Match: A0A6J1J6G7 (outer envelope pore protein 16-3, chloroplastic/mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111481780 PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 9.9e-80
Identity = 155/158 (98.10%), Postives = 156/158 (98.73%), Query Frame = 0


Query: 42  MDASERRYLEDDDTSIMKMIKGATTGFVSGTIFGTIAATWYDVPRVERNVALPGLVRTLK 101
           MDASERRYLEDDDTSIMK IKGATTGFVSGTIFGTIAATWYDVPRVERNVALPGLVRTLK
Sbjct: 1   MDASERRYLEDDDTSIMKTIKGATTGFVSGTIFGTIAATWYDVPRVERNVALPGLVRTLK 60

Query: 102 MMGNYGMTFAAIGGVYIGVEQLVQNYRMKRDFVNGAVGGFAAGASVLGYKGKSISTAISA 161
           MMGNYGMTFAAIGGVYIGVEQLVQNYRMKRDFVNGA+GGFAAGASVLGYKGKSI TAISA
Sbjct: 61  MMGNYGMTFAAIGGVYIGVEQLVQNYRMKRDFVNGAIGGFAAGASVLGYKGKSIPTAISA 120

Query: 162 GAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 200
           GAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE
Sbjct: 121 GAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 158

[Close]

BLAST of CmoCh06G000800.1 vs. ExPASy TrEMBL
Match: A0A6J1FAE0 (outer envelope pore protein 16-3, chloroplastic/mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111442280 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 3.7e-79
Identity = 154/158 (97.47%), Postives = 155/158 (98.10%), Query Frame = 0


Query: 42  MDASERRYLEDDDTSIMKMIKGATTGFVSGTIFGTIAATWYDVPRVERNVALPGLVRTLK 101
           MDASERRYLEDDDT IMK IKGATTGFVSGTIFGTIAATWYDVPRVERNVALPGLVRTLK
Sbjct: 1   MDASERRYLEDDDTPIMKTIKGATTGFVSGTIFGTIAATWYDVPRVERNVALPGLVRTLK 60

Query: 102 MMGNYGMTFAAIGGVYIGVEQLVQNYRMKRDFVNGAVGGFAAGASVLGYKGKSISTAISA 161
           MMGNYGMTFAAIGGVYIGVEQLVQNYRMKRDFVNGA+GGFAAGASVLGYKGKSI TAISA
Sbjct: 61  MMGNYGMTFAAIGGVYIGVEQLVQNYRMKRDFVNGAIGGFAAGASVLGYKGKSIPTAISA 120

Query: 162 GAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 200
           GAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE
Sbjct: 121 GAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 158

[Close]

BLAST of CmoCh06G000800.1 vs. ExPASy TrEMBL
Match: A0A6J1DN96 (outer envelope pore protein 16-3, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 GN=LOC111021571 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 1.9e-78
Identity = 152/158 (96.20%), Postives = 155/158 (98.10%), Query Frame = 0


Query: 42  MDASERRYLEDDDTSIMKMIKGATTGFVSGTIFGTIAATWYDVPRVERNVALPGLVRTLK 101
           MDASERRYLEDDDTS+MK IKGATTGFV+GTIFGTIAATWYDVPRVERNVALPG +RTLK
Sbjct: 1   MDASERRYLEDDDTSMMKTIKGATTGFVAGTIFGTIAATWYDVPRVERNVALPGFLRTLK 60

Query: 102 MMGNYGMTFAAIGGVYIGVEQLVQNYRMKRDFVNGAVGGFAAGASVLGYKGKSISTAISA 161
           MMGNYGMTFAAIGGVYIGVEQLVQNYRMKRDFVNGAVGGFAAGASVLGYKGKSISTAISA
Sbjct: 61  MMGNYGMTFAAIGGVYIGVEQLVQNYRMKRDFVNGAVGGFAAGASVLGYKGKSISTAISA 120

Query: 162 GAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 200
           GAALAVTS LIDVGGQTTRIDNGKEYYPYTTKKRSHIE
Sbjct: 121 GAALAVTSTLIDVGGQTTRIDNGKEYYPYTTKKRSHIE 158

[Close]

BLAST of CmoCh06G000800.1 vs. TAIR 10
Match: AT2G42210.2 (Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein )

HSP 1 Score: 244.2 bits (622), Expect = 8.9e-65
Identity = 121/169 (71.60%), Postives = 142/169 (84.02%), Query Frame = 0


Query: 31  LWPLSATSKIPMDASERRYLEDDDTSIMKMIKGATTGFVSGTIFGTIAATWYDVPRVERN 90
           L  L  T +  MD +E RYLE++D  +MK IKG+ TGF +GTI+GTI ATW DVPRVERN
Sbjct: 4   LCALGRTVEEIMDPAEMRYLEEEDGPLMKTIKGSITGFGAGTIYGTILATWKDVPRVERN 63

Query: 91  VALPGLVRTLKMMGNYGMTFAAIGGVYIGVEQLVQNYRMKRDFVNGAVGGFAAGASVLGY 150
           VALPGL+RTLKMMG +G+TFAAIGGVYIGVEQLVQN+R KRDF NGA+GGF AGASVLGY
Sbjct: 64  VALPGLIRTLKMMGTHGLTFAAIGGVYIGVEQLVQNFRSKRDFYNGAIGGFVAGASVLGY 123

Query: 151 KGKSISTAISAGAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 200
           + +SI TAI+AGA LAVTSALID GGQTTR+DNG+EYYPYT +KR+  +
Sbjct: 124 RARSIPTAIAAGATLAVTSALIDSGGQTTRVDNGREYYPYTVEKRAEAD 172

[Close]

BLAST of CmoCh06G000800.1 vs. TAIR 10
Match: AT2G42210.1 (Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein )

HSP 1 Score: 243.4 bits (620), Expect = 1.5e-64
Identity = 118/158 (74.68%), Postives = 138/158 (87.34%), Query Frame = 0


Query: 42  MDASERRYLEDDDTSIMKMIKGATTGFVSGTIFGTIAATWYDVPRVERNVALPGLVRTLK 101
           MD +E RYLE++D  +MK IKG+ TGF +GTI+GTI ATW DVPRVERNVALPGL+RTLK
Sbjct: 1   MDPAEMRYLEEEDGPLMKTIKGSITGFGAGTIYGTILATWKDVPRVERNVALPGLIRTLK 60

Query: 102 MMGNYGMTFAAIGGVYIGVEQLVQNYRMKRDFVNGAVGGFAAGASVLGYKGKSISTAISA 161
           MMG +G+TFAAIGGVYIGVEQLVQN+R KRDF NGA+GGF AGASVLGY+ +SI TAI+A
Sbjct: 61  MMGTHGLTFAAIGGVYIGVEQLVQNFRSKRDFYNGAIGGFVAGASVLGYRARSIPTAIAA 120

Query: 162 GAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 200
           GA LAVTSALID GGQTTR+DNG+EYYPYT +KR+  +
Sbjct: 121 GATLAVTSALIDSGGQTTRVDNGREYYPYTVEKRAEAD 158

[Close]

BLAST of CmoCh06G000800.1 vs. TAIR 10
Match: AT2G42210.3 (Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein )

HSP 1 Score: 243.4 bits (620), Expect = 1.5e-64
Identity = 118/158 (74.68%), Postives = 138/158 (87.34%), Query Frame = 0


Query: 42  MDASERRYLEDDDTSIMKMIKGATTGFVSGTIFGTIAATWYDVPRVERNVALPGLVRTLK 101
           MD +E RYLE++D  +MK IKG+ TGF +GTI+GTI ATW DVPRVERNVALPGL+RTLK
Sbjct: 1   MDPAEMRYLEEEDGPLMKTIKGSITGFGAGTIYGTILATWKDVPRVERNVALPGLIRTLK 60

Query: 102 MMGNYGMTFAAIGGVYIGVEQLVQNYRMKRDFVNGAVGGFAAGASVLGYKGKSISTAISA 161
           MMG +G+TFAAIGGVYIGVEQLVQN+R KRDF NGA+GGF AGASVLGY+ +SI TAI+A
Sbjct: 61  MMGTHGLTFAAIGGVYIGVEQLVQNFRSKRDFYNGAIGGFVAGASVLGYRARSIPTAIAA 120

Query: 162 GAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 200
           GA LAVTSALID GGQTTR+DNG+EYYPYT +KR+  +
Sbjct: 121 GATLAVTSALIDSGGQTTRVDNGREYYPYTVEKRAEAD 158

[Close]

BLAST of CmoCh06G000800.1 vs. TAIR 10
Match: AT2G42210.4 (Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein )

HSP 1 Score: 243.4 bits (620), Expect = 1.5e-64
Identity = 118/158 (74.68%), Postives = 138/158 (87.34%), Query Frame = 0


Query: 42  MDASERRYLEDDDTSIMKMIKGATTGFVSGTIFGTIAATWYDVPRVERNVALPGLVRTLK 101
           MD +E RYLE++D  +MK IKG+ TGF +GTI+GTI ATW DVPRVERNVALPGL+RTLK
Sbjct: 1   MDPAEMRYLEEEDGPLMKTIKGSITGFGAGTIYGTILATWKDVPRVERNVALPGLIRTLK 60

Query: 102 MMGNYGMTFAAIGGVYIGVEQLVQNYRMKRDFVNGAVGGFAAGASVLGYKGKSISTAISA 161
           MMG +G+TFAAIGGVYIGVEQLVQN+R KRDF NGA+GGF AGASVLGY+ +SI TAI+A
Sbjct: 61  MMGTHGLTFAAIGGVYIGVEQLVQNFRSKRDFYNGAIGGFVAGASVLGYRARSIPTAIAA 120

Query: 162 GAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 200
           GA LAVTSALID GGQTTR+DNG+EYYPYT +KR+  +
Sbjct: 121 GATLAVTSALIDSGGQTTRVDNGREYYPYTVEKRAEAD 158

[Close]

BLAST of CmoCh06G000800.1 vs. TAIR 10
Match: AT3G57900.1 (unknown protein; Has 22 Blast hits to 22 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 51.2 bits (121), Expect = 1.1e-06
Identity = 33/96 (34.38%), Postives = 42/96 (43.75%), Query Frame = 0


Query: 42  MDASERRYLEDDDTSIMKMIKGATTGFVSGTIFGTIAATWYDVPRVERNVALPGLVRTLK 101
           MD +E RYLE+++ ++MK  K A TGF +G                              
Sbjct: 1   MDPTEMRYLEEENGAMMKTFKDAVTGFATG------------------------------ 56

Query: 102 MMGNYGMTFAAIGGVYIGVEQLVQNYRMKRDFVNGA 138
                         V+IGVEQLVQN+R KRDF NGA
Sbjct: 61  ----------KTSLVFIGVEQLVQNFRAKRDFFNGA 56

The following BLAST results are available for this feature:

BLAST of CmoCh06G000800.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O48528	2.1e-63	74.68	Outer envelope pore protein 16-3, chloroplastic/mitochondrial OS=Arabidopsis tha...	[more]

BLAST of CmoCh06G000800.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G9D0	4.0e-81	100.00	outer envelope pore protein 16-3, chloroplastic/mitochondrial-like OS=Cucurbita ...	[more]
A0A6J1I3G7	5.8e-80	98.73	outer envelope pore protein 16-3, chloroplastic/mitochondrial-like OS=Cucurbita ...	[more]
A0A6J1J6G7	9.9e-80	98.10	outer envelope pore protein 16-3, chloroplastic/mitochondrial-like OS=Cucurbita ...	[more]
A0A6J1FAE0	3.7e-79	97.47	outer envelope pore protein 16-3, chloroplastic/mitochondrial OS=Cucurbita mosch...	[more]
A0A6J1DN96	1.9e-78	96.20	outer envelope pore protein 16-3, chloroplastic/mitochondrial OS=Momordica chara...	[more]

BLAST of CmoCh06G000800.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42210.2	8.9e-65	71.60	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family...	[more]
AT2G42210.1	1.5e-64	74.68	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family...	[more]
AT2G42210.3	1.5e-64	74.68	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family...	[more]
AT2G42210.4	1.5e-64	74.68	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family...	[more]
AT3G57900.1	1.1e-06	34.38	unknown protein; Has 22 Blast hits to 22 proteins in 7 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF02466	Tim17	coord: 61..169 e-value: 3.7E-13 score: 49.9
None	No IPR available	PANTHER	PTHR14110:SF18	OUTER ENVELOPE PORE PROTEIN 16-3, CHLOROPLASTIC/MITOCHONDRIAL	coord: 44..197
IPR039175	Mitochondrial import inner membrane translocase subunit TIM22	PANTHER	PTHR14110	MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM22	coord: 44..197

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh06G000800	CmoCh06G000800	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G000800.1:exon:8451	CmoCh06G000800.1:exon:8451	exon
CmoCh06G000800.1:exon:8450	CmoCh06G000800.1:exon:8450	exon
CmoCh06G000800.1:exon:8449	CmoCh06G000800.1:exon:8449	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G000800.1:three_prime_utr	CmoCh06G000800.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G000800.1:cds	CmoCh06G000800.1:cds_3	CDS
CmoCh06G000800.1:cds	CmoCh06G000800.1:cds_2	CDS
CmoCh06G000800.1:cds	CmoCh06G000800.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh06G000800.1	CmoCh06G000800.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045039	protein insertion into mitochondrial inner membrane
cellular_component	GO:0042721	TIM22 mitochondrial import inner membrane insertion complex
cellular_component	GO:0016021	integral component of membrane