CmoCh06G000710.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G000710.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	protein FAR1-RELATED SEQUENCE 5
Location	Cmo_Chr06: 435952 .. 439170 (-)
Sequence length	1198
RNA-Seq Expression	CmoCh06G000710.1
Synteny	CmoCh06G000710.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGTCTTATCTTTCCTTCCCACCGTCGTTTTTTACACCCATTTTTCTCCATCGTCGCTCTCTCGGGAAGCTTCTTTCACATAACTTCGCACAACAGACGCCGCCACTCGCCTTCTTTCTTCCTTCTGCCCAATCAATTCTTTTACTTCTAATCAGGGTATTGTTTCTAATCGCAGTTCTTATTTCTCTTGTTTCGCCAATCCTCTCGCTTGCAGACTGAATTTCTGATGTCAGGATTGAATTGAATACCCTTAGATACTGTATTGTTCTTCTGGGTTTCATTGTTTGTTGGAAATTGAATTGTCATTTATGTATACTGGACATATTGGGAAATTCGCTTCACAGAGTTTGAAGTAATTGATGAAACTACTTTCCATTTTTGGTTGTTGTGTGGTTTTCGGTTCTTGTGTGCGCCGCCATTTTTCGTTTGGATGATCTAACTTTGCAAATGGGGAATTGTTGATGTTTTGTATCTGCTGTTCTTTGTGTCTCTCCCATTTCTGATGAATTTTCTGCGATCGTATATCTCTTTTTTCTGCTTGTTTCATTAGTGATTTAGTTAATTTTTCTAGAAATTGGTAACTTTCAGATGGATTTGAGAGATAATAGTGAAAGATGTCTTCTGACAGTGGACGCAGATGAGGGAGGATCATTTGAAAGTCCAGCAGCGACGGAATTAATTGAATGTCATGGTGATATTATTCTTGAGCCTTATGAGGGCATGGAATTTGAATCTGAAGATGCTGCTAAAATTTTCTATGATAAGTATGCCCGTCAAGTGGGATTTGTCATGCGTGTGATGTCCTGTCGTCGTTCTGAAAAAGATGGGAGGATACTTGCGCGACGACTTGGATGCAATAAAGAGGGGTATTGTGTCAGCATTCGAGGTAAATTTGGGGCAGTTCGGAAGCCTCGGCCGAGCACTCGAGAAGGCTGCAAGGCAATGATTCATGTCAAATATGATAAGTCTGGGAAATGGGTGATTACAAAATTTGTAAAGGAGCATAATCATCCTCTTGTGGTTTCGCCCCGTGAAGCTCGGCAGACGATGGTTCGTGTTTCTCTTACCCCGTTCTTTTACTTCCATCTATCATCATATATTACAATTGTAGATTTGCTTACTTTTGCTCTCAGTAAGACTGTATTCTTTGCCAGTGTGGTATCCTTACTATTCTGCAAAGATGTTATGGAATTGGAAATGATTGGAATCTGAATTTCTTTAAACAAGGAGAGCTATTTAATGGATCGTTCAAGAGAATCAATTATATTGTTTAGGGAGATGGAAGTGAAAACACCTTTGCCTTACATCTGGCCAACTGTGTAACAGCCCAAGCCCACCGCTAGCAGATAATGTCTTTTTTGGGATTCCTCTCAAGTTTTAAAACGCGTATGCTAGGGAGAGGTTTACACACCCTTATAAATAATGTTTTGTTCCCCCTCCAATCAATGTGGGATCTCACAATCCTCCCCCCTTCAGAGCTGCTAACACACTACCCGATATCTGACTCTGATATCAGTTGTAATAGCTCAAGCCCACCGCTAGCAGATGTTGTCTTCTTTGGGCTTTTCCTTCCGGGCTTCCCCTCAAGGTTTTAAAACGGGTCTGCTAAGGAGAGGTTTTCACACCCTTTTAAAGAATGCTTTGTACCCTTCTCTAACTGATGTGGGACCTCACAAACGGTCAATAGGGACTTGTGTGTAAAAGGATTAAATGTCACGTATATAAACTATAGTTGTGACCTTGCTTTAAGGGAGAAGCTTCTAGTTTCATCTGTCTTTCTAATCTTTGTGCGATTCTCCATACTTTGGCCTATATTTTAGATTGTTCTTGACTTTAGTTTCGTATTGCTCAATGTTGTGTTGGGGATTGTTTTATACCGTTGTGGTGTCTAGCACCATCTAGGATTTTTTTCTTTTTCCATTATGAAAGTATTGTTGTGAGATCCCATCTCGGTTGGAGAGGAGAACAAATCATTCTTTATAAGGGTGTGAAAACCTCTCCCAAGCAGAGACGCGTTTTAAAAACCTTGAGAGGAAGCTCGAAAGAGAAGGCCCAAAGAGGACAATATCTATTAGCGGTGGGCTTGGGCCGTTACAATTGTTGTTGTTATTATTATTATAATAAAGAAACTATGTTACACACGAAGTTTCACTTTTAGCGGTTTATTAATAAACCTATTGTGTGTACAGTTTATTGATGCCCATGTCACTGCTATCTCTTTTACTTGGGAGTATGGTGTGACCCTGATTTTCATTTAGATATATGTGGAAGAAACCTGCCCCTTTAACCAACTCAAATGAACATATCAGTTAAATAAAACCAACCAACCATTCCATCTAGCACATTTAGTTACTCATGAATATCCTACTATCCTTAGTTTGGGAAACTAGTGAACTAACACGAGTTCTTCGGATTATTTGTGTATTCTCACAGTTAAAACCTTTCTGTGGGTGATAGATCTGTATTTATGTTGTATCATATGATTAAATGAGTTGATTTTGAATTTTTGCTTGTAGGATGAAAAAGATAAACAAATACAGGAACTCACTACAGAGCTGCGGAATAAGAAACGGTTGTGTTTGACATACCAAGAACAGCTCGCCGCATTTATGAACATTGTCGAAGAGCATACCGACCAATTATCGAGAAAAGTTCAGAATGTAGTTACCAACCTTAAGGAATTTGAGTCCCTTGAGCAAGAATTGTTGCATCCTAGATAACCCAGCCACAGAGTGAGTATTTGATTGCCTATTGGCTCTTATGCTTCCCCCCAATATTGTCTTTCATCTTAATTTCTTTTCACTGCATCAAAGGTATATCCTATGTCATTTAAGTACAACTATATTCGTATGCAGTGTCGTCGGTGGCCATCGATATTTGGAGCTTGGTAGCATACGAAGAATAGCGACCACCCTTCAGAAAGCTCCCAAAAGGCATTCTTAACAAATCCGCCCTGCCCCACCCCAAACTCGGAGCAAGCGATGGAAACAAGCGTTATAGAGGAATGACATCATAGCAAGCACTGGCATGAAGAAGTATTTGCAGACATCTGAGAGGAGAGATAATTTTGTAATGTAGAGACAATAATTTGATTTACCTCCATGAAAGGATTTTATTGAATAACCAATGCAGTTCTTCAGAAATCTCTGATTGTGCATATACTGAATCGTCCAAATCCCATCCTAGAATGCCCACATAGCTATAATAAGAGAAGCAAGA

mRNA sequence

CCGTCTTATCTTTCCTTCCCACCGTCGTTTTTTACACCCATTTTTCTCCATCGTCGCTCTCTCGGGAAGCTTCTTTCACATAACTTCGCACAACAGACGCCGCCACTCGCCTTCTTTCTTCCTTCTGCCCAATCAATTCTTTTACTTCTAATCAGGATGGATTTGAGAGATAATAGTGAAAGATGTCTTCTGACAGTGGACGCAGATGAGGGAGGATCATTTGAAAGTCCAGCAGCGACGGAATTAATTGAATGTCATGGTGATATTATTCTTGAGCCTTATGAGGGCATGGAATTTGAATCTGAAGATGCTGCTAAAATTTTCTATGATAAGTATGCCCGTCAAGTGGGATTTGTCATGCGTGTGATGTCCTGTCGTCGTTCTGAAAAAGATGGGAGGATACTTGCGCGACGACTTGGATGCAATAAAGAGGGGTATTGTGTCAGCATTCGAGGTAAATTTGGGGCAGTTCGGAAGCCTCGGCCGAGCACTCGAGAAGGCTGCAAGGCAATGATTCATGTCAAATATGATAAGTCTGGGAAATGGGTGATTACAAAATTTGTAAAGGAGCATAATCATCCTCTTGTGGTTTCGCCCCGTGAAGCTCGGCAGACGATGGATGAAAAAGATAAACAAATACAGGAACTCACTACAGAGCTGCGGAATAAGAAACGGTTGTGTTTGACATACCAAGAACAGCTCGCCGCATTTATGAACATTGTCGAAGAGCATACCGACCAATTATCGAGAAAAGTTCAGAATGTAGTTACCAACCTTAAGGAATTTGAGTCCCTTGAGCAAGAATTGTTGCATCCTAGATAACCCAGCCACAGATGTCGTCGGTGGCCATCGATATTTGGAGCTTGGTAGCATACGAAGAATAGCGACCACCCTTCAGAAAGCTCCCAAAAGGCATTCTTAACAAATCCGCCCTGCCCCACCCCAAACTCGGAGCAAGCGATGGAAACAAGCGTTATAGAGGAATGACATCATAGCAAGCACTGGCATGAAGAAGTATTTGCAGACATCTGAGAGGAGAGATAATTTTGTAATGTAGAGACAATAATTTGATTTACCTCCATGAAAGGATTTTATTGAATAACCAATGCAGTTCTTCAGAAATCTCTGATTGTGCATATACTGAATCGTCCAAATCCCATCCTAGAATGCCCACATAGCTATAATAAGAGAAGCAAGA

Coding sequence (CDS)

CCGTCTTATCTTTCCTTCCCACCGTCGTTTTTTACACCCATTTTTCTCCATCGTCGCTCTCTCGGGAAGCTTCTTTCACATAACTTCGCACAACAGACGCCGCCACTCGCCTTCTTTCTTCCTTCTGCCCAATCAATTCTTTTACTTCTAATCAGGATGGATTTGAGAGATAATAGTGAAAGATGTCTTCTGACAGTGGACGCAGATGAGGGAGGATCATTTGAAAGTCCAGCAGCGACGGAATTAATTGAATGTCATGGTGATATTATTCTTGAGCCTTATGAGGGCATGGAATTTGAATCTGAAGATGCTGCTAAAATTTTCTATGATAAGTATGCCCGTCAAGTGGGATTTGTCATGCGTGTGATGTCCTGTCGTCGTTCTGAAAAAGATGGGAGGATACTTGCGCGACGACTTGGATGCAATAAAGAGGGGTATTGTGTCAGCATTCGAGGTAAATTTGGGGCAGTTCGGAAGCCTCGGCCGAGCACTCGAGAAGGCTGCAAGGCAATGATTCATGTCAAATATGATAAGTCTGGGAAATGGGTGATTACAAAATTTGTAAAGGAGCATAATCATCCTCTTGTGGTTTCGCCCCGTGAAGCTCGGCAGACGATGGATGAAAAAGATAAACAAATACAGGAACTCACTACAGAGCTGCGGAATAAGAAACGGTTGTGTTTGACATACCAAGAACAGCTCGCCGCATTTATGAACATTGTCGAAGAGCATACCGACCAATTATCGAGAAAAGTTCAGAATGTAGTTACCAACCTTAAGGAATTTGAGTCCCTTGAGCAAGAATTGTTGCATCCTAGATAA

Protein sequence

PSYLSFPPSFFTPIFLHRRSLGKLLSHNFAQQTPPLAFFLPSAQSILLLLIRMDLRDNSERCLLTVDADEGGSFESPAATELIECHGDIILEPYEGMEFESEDAAKIFYDKYARQVGFVMRVMSCRRSEKDGRILARRLGCNKEGYCVSIRGKFGAVRKPRPSTREGCKAMIHVKYDKSGKWVITKFVKEHNHPLVVSPREARQTMDEKDKQIQELTTELRNKKRLCLTYQEQLAAFMNIVEEHTDQLSRKVQNVVTNLKEFESLEQELLHPR

Homology

[Close]

BLAST of CmoCh06G000710.1 vs. ExPASy Swiss-Prot
Match: Q9SZL8 (Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=FRS5 PE=1 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.2e-26
Identity = 58/108 (53.70%), Postives = 76/108 (70.37%), Query Frame = 0


Query: 91  LEPYEGMEFESEDAAKIFYDKYARQVGFVMRVMSCRRSEKDGRILARRLGCNKEGY--CV 150
           LEPY+G+EFESE+AAK FY+ YAR++GF  RV S RRS +DG I+ R+  C KEG+    
Sbjct: 71  LEPYDGLEFESEEAAKAFYNSYARRIGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNMN 130

Query: 151 SIRGKFGAVRKPRPSTREGCKAMIHVKYDKSGKWVITKFVKEHNHPLV 197
             R K   +++PR  TR GCKA + VK   SGKW+++ FVK+HNH LV
Sbjct: 131 EKRTKDREIKRPRTITRVGCKASLSVKMQDSGKWLVSGFVKDHNHELV 178

[Close]

BLAST of CmoCh06G000710.1 vs. ExPASy Swiss-Prot
Match: Q9SWG3 (Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=FAR1 PE=1 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 7.8e-16
Identity = 40/110 (36.36%), Postives = 64/110 (58.18%), Query Frame = 0


Query: 87  GDIILEPYEGMEFESEDAAKIFYDKYARQVGFVMRVMSCRRSEKDGRILARRLGCNKEGY 146
           GD+ LEP  G++F++ +AA IFY +YA+ +GF   + + RRS+K    +  +  C++ G 
Sbjct: 45  GDLDLEPRNGIDFDTHEAAYIFYQEYAKSMGFTTSIKNSRRSKKTKDFIDAKFACSRYGV 104

Query: 147 CVSIRGKFGAVRKPRPSTREGCKAMIHVKYDKSGKWVITKFVKEHNHPLV 197
                   G+  +     +  CKA +HVK    GKW+I +FVK+HNH L+
Sbjct: 105 TPESESS-GSSSRRSTVKKTDCKASMHVKRRPDGKWIIHEFVKDHNHELL 153

[Close]

BLAST of CmoCh06G000710.1 vs. ExPASy Swiss-Prot
Match: Q3EBQ3 (Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=FRS2 PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.0e-15
Identity = 58/171 (33.92%), Postives = 93/171 (54.39%), Query Frame = 0


Query: 63  LLTVDADEGGSFESPAATELIECHGDIILEPYEGMEFESEDAAKIFYDKYARQVGFVMRV 122
           LLT  ++     E+  +  + +C    + E   GM+FES++AA  FY +YAR VGF + +
Sbjct: 10  LLTKSSNVDVFCEASTSGNVAQC--ATVSELRNGMDFESKEAAYYFYREYARSVGFGITI 69

Query: 123 MSCRRSEKDGRILARRLGCNKEGYCVSIRGKFGAVRKPRPSTREGCKAMIHVKYDKSGKW 182
            + RRS++ G+ +  ++ C++ G   + R K  A+  PR   + GCKA +H+K  +  KW
Sbjct: 70  KASRRSKRSGKFIDVKIACSRFG---TKREKATAI-NPRSCPKTGCKAGLHMKRKEDEKW 129

Query: 183 VITKFVKEHNHPLVVSPREARQTMDEKDKQIQELTTELRNKKRLCLTYQEQ 234
           VI  FVKEHNH   + P +   ++  K+K    L      KK L L  +E+
Sbjct: 130 VIYNFVKEHNHE--ICPDDFYVSVRGKNKPAGALAI----KKGLQLALEEE 168

[Close]

BLAST of CmoCh06G000710.1 vs. ExPASy Swiss-Prot
Match: Q9M8J3 (Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana OX=3702 GN=FRS7 PE=2 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.0e-15
Identity = 49/139 (35.25%), Postives = 73/139 (52.52%), Query Frame = 0


Query: 82  LIECHGDIILEPYEGMEFESEDAAKIFYDKYARQVGFVMRVMSCRRSEKDGRILARRLGC 141
           + E  GD  LEPY G+EF++ + A+ +Y+ YA + GF +R     RS  DG + +RR  C
Sbjct: 17  IAENEGDSGLEPYVGLEFDTAEEARDYYNSYATRTGFKVRTGQLYRSRTDGTVSSRRFVC 76

Query: 142 NKEGYCVSIRGKFGAVRKPRPSTREGCKAMIHVKYDKSGKWVITKFVKEHNHPLVVSPRE 201
           +KEG+              + ++R GC A I V+   +GKWV+ +  KEHNH L     E
Sbjct: 77  SKEGF--------------QLNSRTGCPAFIRVQRRDTGKWVLDQIQKEHNHDLGGHIEE 136

Query: 202 ARQTMDEKDKQIQELTTEL 221
           A+ T     +Q     T+L
Sbjct: 137 AQTTPRPSVQQRAPAPTKL 141

[Close]

BLAST of CmoCh06G000710.1 vs. ExPASy Swiss-Prot
Match: Q9LIE5 (Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidopsis thaliana OX=3702 GN=FHY3 PE=1 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 6.6e-15
Identity = 52/152 (34.21%), Postives = 71/152 (46.71%), Query Frame = 0


Query: 66  VDADEGGSFESPAATELIECHGDIILEPYEGMEFESEDAAKIFYDKYARQVGFVMRVMSC 125
           V+ D+      P   EL+E    + LEP  GMEFES   A  FY +Y+R +GF   + + 
Sbjct: 44  VNTDDSVGMGVPTG-ELVEYTEGMNLEPLNGMEFESHGEAYSFYQEYSRAMGFNTAIQNS 103

Query: 126 RRSEKDGRILARRLGCNKEG----YCVSIRGKFGAVRKPRPSTREG--------CKAMIH 185
           RRS+     +  +  C++ G    Y  S         K  P    G        CKA +H
Sbjct: 104 RRSKTTREFIDAKFACSRYGTKREYDKSFNRPRARQSKQDPENMAGRRTCAKTDCKASMH 163

Query: 186 VKYDKSGKWVITKFVKEHNHPLVVSPREARQT 206
           VK    GKWVI  FV+EHNH L+ +   + QT
Sbjct: 164 VKRRPDGKWVIHSFVREHNHELLPAQAVSEQT 194

[Close]

BLAST of CmoCh06G000710.1 vs. ExPASy TrEMBL
Match: A0A6J1GI42 (protein FAR1-RELATED SEQUENCE 2-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111454135 PE=4 SV=1)

HSP 1 Score: 446.4 bits (1147), Expect = 8.4e-122
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0


Query: 53  MDLRDNSERCLLTVDADEGGSFESPAATELIECHGDIILEPYEGMEFESEDAAKIFYDKY 112
           MDLRDNSERCLLTVDADEGGSFESPAATELIECHGDIILEPYEGMEFESEDAAKIFYDKY
Sbjct: 1   MDLRDNSERCLLTVDADEGGSFESPAATELIECHGDIILEPYEGMEFESEDAAKIFYDKY 60

Query: 113 ARQVGFVMRVMSCRRSEKDGRILARRLGCNKEGYCVSIRGKFGAVRKPRPSTREGCKAMI 172
           ARQVGFVMRVMSCRRSEKDGRILARRLGCNKEGYCVSIRGKFGAVRKPRPSTREGCKAMI
Sbjct: 61  ARQVGFVMRVMSCRRSEKDGRILARRLGCNKEGYCVSIRGKFGAVRKPRPSTREGCKAMI 120

Query: 173 HVKYDKSGKWVITKFVKEHNHPLVVSPREARQTMDEKDKQIQELTTELRNKKRLCLTYQE 232
           HVKYDKSGKWVITKFVKEHNHPLVVSPREARQTMDEKDKQIQELTTELRNKKRLCLTYQE
Sbjct: 121 HVKYDKSGKWVITKFVKEHNHPLVVSPREARQTMDEKDKQIQELTTELRNKKRLCLTYQE 180

Query: 233 QLAAFMNIVEEHTDQLSRKVQNVVTNLKEFESLEQELLHPR 274
           QLAAFMNIVEEHTDQLSRKVQNVVTNLKEFESLEQELLHPR
Sbjct: 181 QLAAFMNIVEEHTDQLSRKVQNVVTNLKEFESLEQELLHPR 221

[Close]

BLAST of CmoCh06G000710.1 vs. ExPASy TrEMBL
Match: A0A6J1I1K3 (protein FAR1-RELATED SEQUENCE 2-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470056 PE=4 SV=1)

HSP 1 Score: 437.6 bits (1124), Expect = 3.9e-119
Identity = 218/221 (98.64%), Postives = 218/221 (98.64%), Query Frame = 0


Query: 53  MDLRDNSERCLLTVDADEGGSFESPAATELIECHGDIILEPYEGMEFESEDAAKIFYDKY 112
           MDLRDNSERCLLTVDADEGGSFESPAATELIEC GDIILEPYEGMEFESEDAAKIFYDKY
Sbjct: 1   MDLRDNSERCLLTVDADEGGSFESPAATELIECDGDIILEPYEGMEFESEDAAKIFYDKY 60

Query: 113 ARQVGFVMRVMSCRRSEKDGRILARRLGCNKEGYCVSIRGKFGAVRKPRPSTREGCKAMI 172
           ARQVGFVMRVMSCRRSEKDGRILARRLGCNKEGYCVSIRGKFGAVRKPR STREGCKAMI
Sbjct: 61  ARQVGFVMRVMSCRRSEKDGRILARRLGCNKEGYCVSIRGKFGAVRKPRASTREGCKAMI 120

Query: 173 HVKYDKSGKWVITKFVKEHNHPLVVSPREARQTMDEKDKQIQELTTELRNKKRLCLTYQE 232
           HVKYDKSGKWVITKFVKEHNHPLVVSPREARQTMDEKDKQIQELTTELRNKKRLCLTYQE
Sbjct: 121 HVKYDKSGKWVITKFVKEHNHPLVVSPREARQTMDEKDKQIQELTTELRNKKRLCLTYQE 180

Query: 233 QLAAFMNIVEEHTDQLSRKVQNVVTNLKEFESLEQELLHPR 274
           QLAAFM IVEEHTDQLSRKVQNVVTNLKEFESLEQELLHPR
Sbjct: 181 QLAAFMKIVEEHTDQLSRKVQNVVTNLKEFESLEQELLHPR 221

[Close]

BLAST of CmoCh06G000710.1 vs. ExPASy TrEMBL
Match: A0A6J1DLA3 (protein FAR1-RELATED SEQUENCE 5 OS=Momordica charantia OX=3673 GN=LOC111021572 PE=4 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 2.6e-115
Identity = 214/227 (94.27%), Postives = 215/227 (94.71%), Query Frame = 0


Query: 53  MDLRDNSERCLLTVDAD------EGGSFESPAATELIECHGDIILEPYEGMEFESEDAAK 112
           MDLRDNSERCLLTVDAD      EGGSFESPA TELIEC GDIILEPYEGMEFESED AK
Sbjct: 1   MDLRDNSERCLLTVDADEGEEGIEGGSFESPAGTELIECDGDIILEPYEGMEFESEDDAK 60

Query: 113 IFYDKYARQVGFVMRVMSCRRSEKDGRILARRLGCNKEGYCVSIRGKFGAVRKPRPSTRE 172
           IFYDKYARQVGFVMRVMSCRRSEKDGRILARRLGCNKEGYCVSIRGKFGAVRKPRPSTRE
Sbjct: 61  IFYDKYARQVGFVMRVMSCRRSEKDGRILARRLGCNKEGYCVSIRGKFGAVRKPRPSTRE 120

Query: 173 GCKAMIHVKYDKSGKWVITKFVKEHNHPLVVSPREARQTMDEKDKQIQELTTELRNKKRL 232
           GCKAMIHVKYDKSGKWVITKFVKEHNHPLVVSPREARQTMDEKDKQIQELT ELRNKKRL
Sbjct: 121 GCKAMIHVKYDKSGKWVITKFVKEHNHPLVVSPREARQTMDEKDKQIQELTIELRNKKRL 180

Query: 233 CLTYQEQLAAFMNIVEEHTDQLSRKVQNVVTNLKEFESLEQELLHPR 274
           C TYQEQLAAFM IVEEHTDQLSRKVQNVVTNLKEFES+EQELLHPR
Sbjct: 181 CSTYQEQLAAFMKIVEEHTDQLSRKVQNVVTNLKEFESIEQELLHPR 227

[Close]

BLAST of CmoCh06G000710.1 vs. ExPASy TrEMBL
Match: A0A6J1J157 (protein FAR1-RELATED SEQUENCE 5-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481745 PE=4 SV=1)

HSP 1 Score: 421.8 bits (1083), Expect = 2.2e-114
Identity = 213/228 (93.42%), Postives = 216/228 (94.74%), Query Frame = 0


Query: 52  RMDLRDNSERCLLTVDAD------EGGSFESPAATELIECHGDIILEPYEGMEFESEDAA 111
           +MDLRDNSERC+LTVDAD      EGGSFESPA TELIE  GDIILEPYEGMEFESEDAA
Sbjct: 5   QMDLRDNSERCVLTVDADAVEEGIEGGSFESPAGTELIEGDGDIILEPYEGMEFESEDAA 64

Query: 112 KIFYDKYARQVGFVMRVMSCRRSEKDGRILARRLGCNKEGYCVSIRGKFGAVRKPRPSTR 171
           KIFYDKYARQVGFVMRVMSCRRSEKDGRILARRLGCNKEGYCVSIRGKFGAVRKPRPSTR
Sbjct: 65  KIFYDKYARQVGFVMRVMSCRRSEKDGRILARRLGCNKEGYCVSIRGKFGAVRKPRPSTR 124

Query: 172 EGCKAMIHVKYDKSGKWVITKFVKEHNHPLVVSPREARQTMDEKDKQIQELTTELRNKKR 231
           EGCKAMIHVKYDKSGKWVITKFVKEHNHPLVVSPREARQTMDEKDKQIQELT ELRNKKR
Sbjct: 125 EGCKAMIHVKYDKSGKWVITKFVKEHNHPLVVSPREARQTMDEKDKQIQELTIELRNKKR 184

Query: 232 LCLTYQEQLAAFMNIVEEHTDQLSRKVQNVVTNLKEFESLEQELLHPR 274
           LC TYQEQLAAFM IVEEHTDQLSRKVQNVVTNLKEFES+EQELLHPR
Sbjct: 185 LCSTYQEQLAAFMKIVEEHTDQLSRKVQNVVTNLKEFESIEQELLHPR 232

[Close]

BLAST of CmoCh06G000710.1 vs. ExPASy TrEMBL
Match: A0A6J1IYB6 (protein FAR1-RELATED SEQUENCE 5-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111481745 PE=4 SV=1)

HSP 1 Score: 421.4 bits (1082), Expect = 2.9e-114
Identity = 213/227 (93.83%), Postives = 215/227 (94.71%), Query Frame = 0


Query: 53  MDLRDNSERCLLTVDAD------EGGSFESPAATELIECHGDIILEPYEGMEFESEDAAK 112
           MDLRDNSERC+LTVDAD      EGGSFESPA TELIE  GDIILEPYEGMEFESEDAAK
Sbjct: 1   MDLRDNSERCVLTVDADAVEEGIEGGSFESPAGTELIEGDGDIILEPYEGMEFESEDAAK 60

Query: 113 IFYDKYARQVGFVMRVMSCRRSEKDGRILARRLGCNKEGYCVSIRGKFGAVRKPRPSTRE 172
           IFYDKYARQVGFVMRVMSCRRSEKDGRILARRLGCNKEGYCVSIRGKFGAVRKPRPSTRE
Sbjct: 61  IFYDKYARQVGFVMRVMSCRRSEKDGRILARRLGCNKEGYCVSIRGKFGAVRKPRPSTRE 120

Query: 173 GCKAMIHVKYDKSGKWVITKFVKEHNHPLVVSPREARQTMDEKDKQIQELTTELRNKKRL 232
           GCKAMIHVKYDKSGKWVITKFVKEHNHPLVVSPREARQTMDEKDKQIQELT ELRNKKRL
Sbjct: 121 GCKAMIHVKYDKSGKWVITKFVKEHNHPLVVSPREARQTMDEKDKQIQELTIELRNKKRL 180

Query: 233 CLTYQEQLAAFMNIVEEHTDQLSRKVQNVVTNLKEFESLEQELLHPR 274
           C TYQEQLAAFM IVEEHTDQLSRKVQNVVTNLKEFES+EQELLHPR
Sbjct: 181 CSTYQEQLAAFMKIVEEHTDQLSRKVQNVVTNLKEFESIEQELLHPR 227

[Close]

BLAST of CmoCh06G000710.1 vs. TAIR 10
Match: AT2G43280.1 (Far-red impaired responsive (FAR1) family protein )

HSP 1 Score: 307.0 bits (785), Expect = 1.5e-83
Identity = 148/186 (79.57%), Postives = 167/186 (89.78%), Query Frame = 0


Query: 88  DIILEPYEGMEFESEDAAKIFYDKYARQVGFVMRVMSCRRSEKDGRILARRLGCNKEGYC 147
           D  +EP EG+ FESEDAAK+FYD Y+R++GFVMRVMSCRRSEKDGRILARR GCNKEG+C
Sbjct: 17  DFAIEPREGIIFESEDAAKMFYDDYSRRLGFVMRVMSCRRSEKDGRILARRFGCNKEGHC 76

Query: 148 VSIRGKFGAVRKPRPSTREGCKAMIHVKYDKSGKWVITKFVKEHNHPLVVSPREARQTMD 207
           VSIRGKFG+VRKPRPSTREGCKAMIHVKYD+SGKWVITKFVKEHNHPLVVSPREAR T+D
Sbjct: 77  VSIRGKFGSVRKPRPSTREGCKAMIHVKYDRSGKWVITKFVKEHNHPLVVSPREARHTLD 136

Query: 208 EKDKQIQELTTELRNKKRLCLTYQEQLAAFMNIVEEHTDQLSRKVQNVVTNLKEFESLEQ 267
           EKDK+IQELT ELRNKKRLC  Y+EQL AF  IVEEH++Q+++KV+NVV NLKEFE LE 
Sbjct: 137 EKDKRIQELTIELRNKKRLCAAYKEQLDAFAKIVEEHSNQIAKKVENVVNNLKEFEHLEH 196

Query: 268 ELLHPR 274
            LL  +
Sbjct: 197 ALLRSK 202

[Close]

BLAST of CmoCh06G000710.1 vs. TAIR 10
Match: AT3G07500.1 (Far-red impaired responsive (FAR1) family protein )

HSP 1 Score: 171.0 bits (432), Expect = 1.3e-42
Identity = 92/181 (50.83%), Postives = 127/181 (70.17%), Query Frame = 0


Query: 90  ILEPYEGMEFESEDAAKIFYDKYARQVGFVMRVMSCRRSEKDGRILARRLGCNKEGYCVS 149
           ++EP+ GMEFESE+AAK FYD YA  +GFVMRV + RRS +DG ++ RRL CNKEG+  S
Sbjct: 30  MVEPFIGMEFESEEAAKSFYDNYATCMGFVMRVDAFRRSMRDGTVVWRRLVCNKEGFRRS 89

Query: 150 IRGKFGAVRKPRPSTREGCKAMIHVKYDKSGKWVITKFVKEHNHPLV-VSPREAR----- 209
            R +    RKPR  TREGCKA+I VK +KSG W++TKF KEHNHPL+ +SP   R     
Sbjct: 90  -RPRRSESRKPRAITREGCKALIVVKREKSGTWLVTKFEKEHNHPLLPLSPNVRRNFQLP 149

Query: 210 QTMDEKDKQIQELTTELRNKKRLCLTYQEQLAAFMNIVEEHTDQLSRKVQNVVTNLKEFE 265
           QT DEKD +I+EL+ EL  ++R C   Q+QL   +  +EEH++ L+  + +V+ ++++ E
Sbjct: 150 QTPDEKDAKIRELSAELSRERRRCTALQQQLDMVLKEMEEHSNHLTININSVIQSVRDIE 209

[Close]

BLAST of CmoCh06G000710.1 vs. TAIR 10
Match: AT4G12850.1 (Far-red impaired responsive (FAR1) family protein )

HSP 1 Score: 163.3 bits (412), Expect = 2.7e-40
Identity = 84/178 (47.19%), Postives = 128/178 (71.91%), Query Frame = 0


Query: 87  GDIIL-EPYEGMEFESEDAAKIFYDKYARQVGFVMRVMSCRRSEKDGRILARRLGCNKEG 146
           GD+ L EPY G++FESE+ AK FY +Y++++GFV+R+M  RRS  DGR LARRLGCNK+G
Sbjct: 3   GDLKLDEPYVGLKFESEEEAKDFYVEYSKRLGFVVRMMQRRRSGIDGRTLARRLGCNKQG 62

Query: 147 YCVSIRGKFGAVRKPRPSTREGCKAMIHVKYDKSGKWVITKFVKEHNHPLVVSPREARQT 206
           +  + +    +      S+REGCKA I VK +KSGKWV+T+F+KEHNH L      +  +
Sbjct: 63  FGPNNQRSSSS----SSSSREGCKATILVKMEKSGKWVVTRFIKEHNHSLQFIGSSSYDS 122

Query: 207 MDEKDKQIQELTTELRNKKRLCLTYQEQLAAFMNIVEEHTDQLSRKVQNVVTNLKEFE 264
             +K+++I+ELT E+  + RLC  Y+++L +F++ VE +T++LS KV+++V N+K+ E
Sbjct: 123 FADKERKIKELTEEIECQDRLCDVYRDRLVSFIDNVEHYTEELSLKVRDIVENVKKLE 176

[Close]

BLAST of CmoCh06G000710.1 vs. TAIR 10
Match: AT3G59470.1 (Far-red impaired responsive (FAR1) family protein )

HSP 1 Score: 148.7 bits (374), Expect = 7.0e-36
Identity = 88/200 (44.00%), Postives = 118/200 (59.00%), Query Frame = 0


Query: 78  AATELIECHGDIILEPYEGMEFESEDAAKIFYDKYARQVGFVMRVMSCRRSEKDGRILAR 137
           A  ++ E  GD   EPY G EFESE AA  FY+ YA +VGFV+RV    RS  DG  + R
Sbjct: 58  AVADMTEAQGD---EPYVGQEFESEAAAHGFYNAYATKVGFVIRVSKLSRSRHDGSPIGR 117

Query: 138 RLGCNKEGYCVSIRGKFGAVRKPRPSTREGCKAMIHVKYDKSGKWVITKFVKEHNHPLVV 197
           +L CNKEGY   +  K   V + R  TR GCKAMI ++ + SGKWVITKFVKEHNH L+ 
Sbjct: 118 QLVCNKEGY--RLPSKRDKVIRQRAETRVGCKAMILIRKENSGKWVITKFVKEHNHSLM- 177

Query: 198 SPREAR------QTMDEKDKQIQELTTELRNKKRLCLTYQEQLAAFMNIVEEHTDQLSRK 257
            P   R      Q  +E DK IQEL  +L  +K+   TY+  L      +E+H + LS++
Sbjct: 178 -PGRVRRGCIYDQYPNEHDK-IQELMQQLAAEKKRAATYKRHLEMLFEQIEQHNESLSKR 237

Query: 258 VQNVVTNLKEFESLEQELLH 272
           +Q++V N++  E  + +  H
Sbjct: 238 IQHIVDNVRNLEQRDHQQNH 249

[Close]

BLAST of CmoCh06G000710.1 vs. TAIR 10
Match: AT3G59470.2 (Far-red impaired responsive (FAR1) family protein )

HSP 1 Score: 148.7 bits (374), Expect = 7.0e-36
Identity = 88/200 (44.00%), Postives = 118/200 (59.00%), Query Frame = 0


Query: 78  AATELIECHGDIILEPYEGMEFESEDAAKIFYDKYARQVGFVMRVMSCRRSEKDGRILAR 137
           A  ++ E  GD   EPY G EFESE AA  FY+ YA +VGFV+RV    RS  DG  + R
Sbjct: 58  AVADMTEAQGD---EPYVGQEFESEAAAHGFYNAYATKVGFVIRVSKLSRSRHDGSPIGR 117

Query: 138 RLGCNKEGYCVSIRGKFGAVRKPRPSTREGCKAMIHVKYDKSGKWVITKFVKEHNHPLVV 197
           +L CNKEGY   +  K   V + R  TR GCKAMI ++ + SGKWVITKFVKEHNH L+ 
Sbjct: 118 QLVCNKEGY--RLPSKRDKVIRQRAETRVGCKAMILIRKENSGKWVITKFVKEHNHSLM- 177

Query: 198 SPREAR------QTMDEKDKQIQELTTELRNKKRLCLTYQEQLAAFMNIVEEHTDQLSRK 257
            P   R      Q  +E DK IQEL  +L  +K+   TY+  L      +E+H + LS++
Sbjct: 178 -PGRVRRGCIYDQYPNEHDK-IQELMQQLAAEKKRAATYKRHLEMLFEQIEQHNESLSKR 237

Query: 258 VQNVVTNLKEFESLEQELLH 272
           +Q++V N++  E  + +  H
Sbjct: 238 IQHIVDNVRNLEQRDHQQNH 249

The following BLAST results are available for this feature:

BLAST of CmoCh06G000710.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZL8	2.2e-26	53.70	Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=FRS5 PE=1 SV=...	[more]
Q9SWG3	7.8e-16	36.36	Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=FAR1 PE=1...	[more]
Q3EBQ3	1.0e-15	33.92	Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=FRS2 PE=1 SV=...	[more]
Q9M8J3	1.0e-15	35.25	Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana OX=3702 GN=FRS7 PE=2 SV=...	[more]
Q9LIE5	6.6e-15	34.21	Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidopsis thaliana OX=3702 GN=FHY3 PE...	[more]

BLAST of CmoCh06G000710.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GI42	8.4e-122	100.00	protein FAR1-RELATED SEQUENCE 2-like isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1I1K3	3.9e-119	98.64	protein FAR1-RELATED SEQUENCE 2-like isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1DLA3	2.6e-115	94.27	protein FAR1-RELATED SEQUENCE 5 OS=Momordica charantia OX=3673 GN=LOC111021572 P...	[more]
A0A6J1J157	2.2e-114	93.42	protein FAR1-RELATED SEQUENCE 5-like isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1IYB6	2.9e-114	93.83	protein FAR1-RELATED SEQUENCE 5-like isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of CmoCh06G000710.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43280.1	1.5e-83	79.57	Far-red impaired responsive (FAR1) family protein	[more]
AT3G07500.1	1.3e-42	50.83	Far-red impaired responsive (FAR1) family protein	[more]
AT4G12850.1	2.7e-40	47.19	Far-red impaired responsive (FAR1) family protein	[more]
AT3G59470.1	7.0e-36	44.00	Far-red impaired responsive (FAR1) family protein	[more]
AT3G59470.2	7.0e-36	44.00	Far-red impaired responsive (FAR1) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 206..233
None	No IPR available	PANTHER	PTHR46328	FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED	coord: 70..272
None	No IPR available	PANTHER	PTHR46328:SF17	FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN	coord: 70..272
IPR004330	FAR1 DNA binding domain	PFAM	PF03101	FAR1	coord: 108..196 e-value: 9.2E-29 score: 100.0

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh06G000710	CmoCh06G000710	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G000710.1:exon:8486	CmoCh06G000710.1:exon:8486	exon
CmoCh06G000710.1:exon:8485	CmoCh06G000710.1:exon:8485	exon
CmoCh06G000710.1:exon:8484	CmoCh06G000710.1:exon:8484	exon
CmoCh06G000710.1:exon:8483	CmoCh06G000710.1:exon:8483	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G000710.1:three_prime_utr	CmoCh06G000710.1:three_prime_utr_2	three_prime_UTR
CmoCh06G000710.1:three_prime_utr	CmoCh06G000710.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G000710.1:cds	CmoCh06G000710.1:cds_3	CDS
CmoCh06G000710.1:cds	CmoCh06G000710.1:cds_2	CDS
CmoCh06G000710.1:cds	CmoCh06G000710.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh06G000710.1	CmoCh06G000710.1-protein	polypeptide