CmoCh06G000690.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G000690.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	dehydration-responsive element-binding protein 2F
Location	Cmo_Chr06: 419387 .. 420666 (+)
Sequence length	1199
RNA-Seq Expression	CmoCh06G000690.1
Synteny	CmoCh06G000690.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAGCGGCAGCAGAGACAAAAAATCCCATTCTCCACTTCTTAAGCCATGGAAGAAAGGCCCTTCCAGAGGCAAAGGCGGCCCTCTCAACGCCTCCTGCGAGTACCGCGGCGTCCGGCAGCGGACTTGGGGTAAGTGGGTGGCTGAGATCCGCGAGCCCAAGAAGCGCACCAGGCTCTGGCTGGGCTCCTTCGCCACTGCTGAAGAGGCCGCCATGGCTTATGATCAAGCTGCCACTAGACTCTATGGCCCTGATGCTTATCTCAATCTTCCCCACTTGCAGCCAAATTCTAGTGCTGCTAAATCTAATATCTTCAAATGGGTTCCTTCAAAAAACTTCATTTCTATGTTCCCTCATCATCGCCCTGCTGGTTTCATGCTTAATCTCAATGCTCAGCCTAGTGTTCATCTCATTCATCAGAGGCTTCAGCAGCTTCAAACCTCTCGTGGCTTTCTCTCTCCTTCCAAGGTATTGGAATTTCGCTTTGTATATGAAATGCTTGTTTTTATTTAAATTTTAACTTTCATGACCTCTCTTTCTCTATACAAGAAAGTTGAAGACAAGAGAGAAACAGAGGGAGAGAAGGACGATGAAGCACCGGTGGAAGACGAGGTGGTGACGACAACAACGACAACGATGACGACAATAAGAGCTGTGGAAGAGAAACCACAAATTGATCTAAACGAGTTTCTACAACAACTTGGGATTATGAAAGAGGAGAAAGTGATTGAATCATCAGAAGGAGAGGAAGGGAATGGAGGCTGTTGTTTGGGATCAGAATCATCTAATAATAATTTGAAAGATCATTATAGCGATGAACTTGAAGTACTTAGTGACAAAAGCTTTAACTGGGATTCCATAATGGACGTGAATGCCAATATTGAAGATCTTCATCACCACCATCATCATCAAATTGGAAACTTTGAAGTTTATGATTATGTTCATAACTACGAAGATGATCTAAGTTTTCCCAATTCCATTTGGGATTTTCAAGAGGACCATTCCACCGGAATCATACCTTAACCCTGTTTTGTTCCATGAATTAGGTTGGAAGTGCAAGTTTGAGGATTTCTTTTTGTTCTTGAGGGGTCATATATATGTAGTTAAAATAATGATGATGGGAAACAGAGCACATGAGGGAATGAGAAGAGAGTTTTAAACATAATACTCATCCGGTCCATTCGAGTATAGCTGTTTAGTCAACGAATACGTGAAAACGAGTGTTTTGGTAACATATCAGCAATTTGTAATGAGACAGTGACAAGTTGAGATAAGAC

mRNA sequence

ATGGATAGCGGCAGCAGAGACAAAAAATCCCATTCTCCACTTCTTAAGCCATGGAAGAAAGGCCCTTCCAGAGGCAAAGGCGGCCCTCTCAACGCCTCCTGCGAGTACCGCGGCGTCCGGCAGCGGACTTGGGGTAAGTGGGTGGCTGAGATCCGCGAGCCCAAGAAGCGCACCAGGCTCTGGCTGGGCTCCTTCGCCACTGCTGAAGAGGCCGCCATGGCTTATGATCAAGCTGCCACTAGACTCTATGGCCCTGATGCTTATCTCAATCTTCCCCACTTGCAGCCAAATTCTAGTGCTGCTAAATCTAATATCTTCAAATGGGTTCCTTCAAAAAACTTCATTTCTATGTTCCCTCATCATCGCCCTGCTGGTTTCATGCTTAATCTCAATGCTCAGCCTAGTGTTCATCTCATTCATCAGAGGCTTCAGCAGCTTCAAACCTCTCGTGGCTTTCTCTCTCCTTCCAAGAAAGTTGAAGACAAGAGAGAAACAGAGGGAGAGAAGGACGATGAAGCACCGGTGGAAGACGAGGTGGTGACGACAACAACGACAACGATGACGACAATAAGAGCTGTGGAAGAGAAACCACAAATTGATCTAAACGAGTTTCTACAACAACTTGGGATTATGAAAGAGGAGAAAGTGATTGAATCATCAGAAGGAGAGGAAGGGAATGGAGGCTGTTGTTTGGGATCAGAATCATCTAATAATAATTTGAAAGATCATTATAGCGATGAACTTGAAGTACTTAGTGACAAAAGCTTTAACTGGGATTCCATAATGGACGTGAATGCCAATATTGAAGATCTTCATCACCACCATCATCATCAAATTGGAAACTTTGAAGTTTATGATTATGTTCATAACTACGAAGATGATCTAAGTTTTCCCAATTCCATTTGGGATTTTCAAGAGGACCATTCCACCGGAATCATACCTTAACCCTGTTTTGTTCCATGAATTAGGTTGGAAGTGCAAGTTTGAGGATTTCTTTTTGTTCTTGAGGGGTCATATATATGTAGTTAAAATAATGATGATGGGAAACAGAGCACATGAGGGAATGAGAAGAGAGTTTTAAACATAATACTCATCCGGTCCATTCGAGTATAGCTGTTTAGTCAACGAATACGTGAAAACGAGTGTTTTGGTAACATATCAGCAATTTGTAATGAGACAGTGACAAGTTGAGATAAGAC

Coding sequence (CDS)

ATGGATAGCGGCAGCAGAGACAAAAAATCCCATTCTCCACTTCTTAAGCCATGGAAGAAAGGCCCTTCCAGAGGCAAAGGCGGCCCTCTCAACGCCTCCTGCGAGTACCGCGGCGTCCGGCAGCGGACTTGGGGTAAGTGGGTGGCTGAGATCCGCGAGCCCAAGAAGCGCACCAGGCTCTGGCTGGGCTCCTTCGCCACTGCTGAAGAGGCCGCCATGGCTTATGATCAAGCTGCCACTAGACTCTATGGCCCTGATGCTTATCTCAATCTTCCCCACTTGCAGCCAAATTCTAGTGCTGCTAAATCTAATATCTTCAAATGGGTTCCTTCAAAAAACTTCATTTCTATGTTCCCTCATCATCGCCCTGCTGGTTTCATGCTTAATCTCAATGCTCAGCCTAGTGTTCATCTCATTCATCAGAGGCTTCAGCAGCTTCAAACCTCTCGTGGCTTTCTCTCTCCTTCCAAGAAAGTTGAAGACAAGAGAGAAACAGAGGGAGAGAAGGACGATGAAGCACCGGTGGAAGACGAGGTGGTGACGACAACAACGACAACGATGACGACAATAAGAGCTGTGGAAGAGAAACCACAAATTGATCTAAACGAGTTTCTACAACAACTTGGGATTATGAAAGAGGAGAAAGTGATTGAATCATCAGAAGGAGAGGAAGGGAATGGAGGCTGTTGTTTGGGATCAGAATCATCTAATAATAATTTGAAAGATCATTATAGCGATGAACTTGAAGTACTTAGTGACAAAAGCTTTAACTGGGATTCCATAATGGACGTGAATGCCAATATTGAAGATCTTCATCACCACCATCATCATCAAATTGGAAACTTTGAAGTTTATGATTATGTTCATAACTACGAAGATGATCTAAGTTTTCCCAATTCCATTTGGGATTTTCAAGAGGACCATTCCACCGGAATCATACCTTAA

Protein sequence

MDSGSRDKKSHSPLLKPWKKGPSRGKGGPLNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDQAATRLYGPDAYLNLPHLQPNSSAAKSNIFKWVPSKNFISMFPHHRPAGFMLNLNAQPSVHLIHQRLQQLQTSRGFLSPSKKVEDKRETEGEKDDEAPVEDEVVTTTTTTMTTIRAVEEKPQIDLNEFLQQLGIMKEEKVIESSEGEEGNGGCCLGSESSNNNLKDHYSDELEVLSDKSFNWDSIMDVNANIEDLHHHHHHQIGNFEVYDYVHNYEDDLSFPNSIWDFQEDHSTGIIP

Homology

[Close]

BLAST of CmoCh06G000690.1 vs. ExPASy Swiss-Prot
Match: Q9SVX5 (Dehydration-responsive element-binding protein 2F OS=Arabidopsis thaliana OX=3702 GN=DREB2F PE=1 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 7.7e-60
Identity = 145/299 (48.49%), Postives = 183/299 (61.20%), Query Frame = 0


Query: 12  SPLLKPWKKGPSRGKGGPLNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEA 71
           S  +K WKKGP+RGKGGP NA C+YRGVRQRTWGKWVAEIREPKKR RLWLGSFATAEEA
Sbjct: 4   SSSMKQWKKGPARGKGGPQNALCQYRGVRQRTWGKWVAEIREPKKRARLWLGSFATAEEA 63

Query: 72  AMAYDQAATRLYGPDAYLNLPHLQPNS--SAAKSNIFKWVPSKNFISMFPHHRPAGFMLN 131
           AMAYD+AA +LYG DAYLNLPHLQ N+  S + S  FKWVPS+ FISMF    P+  MLN
Sbjct: 64  AMAYDEAALKLYGHDAYLNLPHLQRNTRPSLSNSQRFKWVPSRKFISMF----PSCGMLN 123

Query: 132 LNAQPSVHLIHQRLQQLQ----TSRGFLSPSKKVEDKRETEGEKDDEAPVEDEVVTTTTT 191
           +NAQPSVH+I QRL++L+     S+ + S S   E K  T           DE  +   T
Sbjct: 124 VNAQPSVHIIQQRLEELKKTGLLSQSYSSSSSSTESKTNTS--------FLDEKTSKGET 183

Query: 192 TMTTIRAVEEKPQIDLNEFLQQLGIMKEEKVIESSEGEEGNGGCCLGSESSNNNLKDHYS 251
                   ++KP+IDL EFLQQLGI+K+E   E SE  E     C      N        
Sbjct: 184 DNMFEGGDQKKPEIDLTEFLQQLGILKDENEAEPSEVAE-----CHSPPPWNEQ-----E 243

Query: 252 DELEVLSDKSFNWDSIMDVNANIEDLHHHHHHQIGNFEVYDYVHNYEDDLSFPNSIWDF 305
           +       ++F+WD+++++  +            G+++       +EDD+SFP SIWD+
Sbjct: 244 ETGSPFRTENFSWDTLIEMPRSETTTMQFDSSNFGSYD-------FEDDVSFP-SIWDY 272

[Close]

BLAST of CmoCh06G000690.1 vs. ExPASy Swiss-Prot
Match: Q10R18 (Dehydration-responsive element-binding protein 2E OS=Oryza sativa subsp. japonica OX=39947 GN=DREB2E PE=2 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 2.0e-47
Identity = 130/324 (40.12%), Postives = 169/324 (52.16%), Query Frame = 0


Query: 16  KPWKKGPSRGKGGPLNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAY 75
           + WKKGP+RGKGGP NA+CEYRGVRQRTWGKWVAEIREP KRTRLWLGSFATAEEAA+AY
Sbjct: 8   RAWKKGPTRGKGGPQNAACEYRGVRQRTWGKWVAEIREPNKRTRLWLGSFATAEEAALAY 67

Query: 76  DQAATRLYGPDAYLNLPHLQPNSSAAKSNIFKWVPSKNFISMFPHHR---PAGFMLNLNA 135
           D+AA RLYGPDA+LNLPHL+  S+AA     +W+P+    +         PA  +LNLNA
Sbjct: 68  DEAARRLYGPDAFLNLPHLRAASAAAAHQRLRWLPASAAAAAARGGAAAVPAYGLLNLNA 127

Query: 136 QPSVHLIHQRLQQLQTSRGFLSPSKKVEDKRETEGEKDDEAPVEDEVVTTTTTT------ 195
           Q +VH+IHQRLQ+L+ S    SP+K                P      T T +       
Sbjct: 128 QHNVHVIHQRLQELKNSSS--SPTKPPPRTPTRANPPPPPLPTSSPCSTVTNSVGSAALP 187

Query: 196 --MTTIRAVE-------------------------EKPQIDLNEFLQQLGIMKEEKVIES 255
             M+  +A+E                         +KPQ+DL EFLQQ+G++K +     
Sbjct: 188 PPMSCFQALEQAMAATAAMESAPCDDDAAVVGFGADKPQLDLKEFLQQIGVLKAD----- 247

Query: 256 SEGEEGNGGCCLGSESSNNNLKDHYSDELEVLSDKSFNWDSIMDVNANIEDLHHHHHHQI 304
            +G  G  G   G +          +D         F+WD++    ++I   H       
Sbjct: 248 DDGATGKNGAVHGDDG-------ELADAFGFGGSGEFDWDALAADMSDIAGGHGGALGAN 307

[Close]

BLAST of CmoCh06G000690.1 vs. ExPASy Swiss-Prot
Match: Q9LQZ2 (Dehydration-responsive element-binding protein 2D OS=Arabidopsis thaliana OX=3702 GN=DREB2D PE=2 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 8.6e-27
Identity = 60/96 (62.50%), Postives = 71/96 (73.96%), Query Frame = 0


Query: 19  KKGPSRGKGGPLNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDQA 78
           +KG  RGKGGP NASC Y+GVRQRTWGKWVAEIREP +  RLWLG+F T+ EAA+AYD A
Sbjct: 25  RKGCMRGKGGPDNASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSREAALAYDSA 84

Query: 79  ATRLYGPDAYLNLPH-LQPNSSAAKSNIFKWVPSKN 114
           A +LYGP+A+LNLP  L+     A S   +  PS N
Sbjct: 85  ARKLYGPEAHLNLPESLRSYPKTASSPASQTTPSSN 120

[Close]

BLAST of CmoCh06G000690.1 vs. ExPASy Swiss-Prot
Match: P61827 (Dehydration-responsive element-binding protein 2G OS=Arabidopsis thaliana OX=3702 GN=DREB2G PE=1 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.1e-24
Identity = 54/77 (70.13%), Postives = 64/77 (83.12%), Query Frame = 0


Query: 19 KKGPSRGKGGPLNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDQA 78
          +KG  +GKGGP NA+C +RGVRQRTWGKWVAEIREP + TRLWLG+F T+ EAAMAYD+A
Sbjct: 17 RKGCMKGKGGPENATCTFRGVRQRTWGKWVAEIREPNRGTRLWLGTFNTSVEAAMAYDEA 76

Query: 79 ATRLYGPDAYLNLPHLQ 96
          A +LYG +A LNL H Q
Sbjct: 77 AKKLYGHEAKLNLVHPQ 93

[Close]

BLAST of CmoCh06G000690.1 vs. ExPASy Swiss-Prot
Match: A0MES8 (Ethylene-responsive transcription factor ABI4 OS=Arabidopsis thaliana OX=3702 GN=ABI4 PE=1 SV=2)

HSP 1 Score: 111.3 bits (277), Expect = 2.0e-23
Identity = 53/81 (65.43%), Postives = 64/81 (79.01%), Query Frame = 0


Query: 24  RGKGGPLNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDQAATRLY 83
           +GKGGP N+   YRGVRQR+WGKWVAEIREP+KRTR WLG+FATAE+AA AYD+AA  LY
Sbjct: 43  KGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAVYLY 102

Query: 84  GPDAYLNLPHLQPNSSAAKSN 105
           G  A LNL    P+S ++ S+
Sbjct: 103 GSRAQLNLTPSSPSSVSSSSS 123

[Close]

BLAST of CmoCh06G000690.1 vs. ExPASy TrEMBL
Match: A0A6J1FV94 (dehydration-responsive element-binding protein 2F OS=Cucurbita moschata OX=3662 GN=LOC111448756 PE=4 SV=1)

HSP 1 Score: 633.6 bits (1633), Expect = 4.3e-178
Identity = 314/314 (100.00%), Postives = 314/314 (100.00%), Query Frame = 0


Query: 1   MDSGSRDKKSHSPLLKPWKKGPSRGKGGPLNASCEYRGVRQRTWGKWVAEIREPKKRTRL 60
           MDSGSRDKKSHSPLLKPWKKGPSRGKGGPLNASCEYRGVRQRTWGKWVAEIREPKKRTRL
Sbjct: 1   MDSGSRDKKSHSPLLKPWKKGPSRGKGGPLNASCEYRGVRQRTWGKWVAEIREPKKRTRL 60

Query: 61  WLGSFATAEEAAMAYDQAATRLYGPDAYLNLPHLQPNSSAAKSNIFKWVPSKNFISMFPH 120
           WLGSFATAEEAAMAYDQAATRLYGPDAYLNLPHLQPNSSAAKSNIFKWVPSKNFISMFPH
Sbjct: 61  WLGSFATAEEAAMAYDQAATRLYGPDAYLNLPHLQPNSSAAKSNIFKWVPSKNFISMFPH 120

Query: 121 HRPAGFMLNLNAQPSVHLIHQRLQQLQTSRGFLSPSKKVEDKRETEGEKDDEAPVEDEVV 180
           HRPAGFMLNLNAQPSVHLIHQRLQQLQTSRGFLSPSKKVEDKRETEGEKDDEAPVEDEVV
Sbjct: 121 HRPAGFMLNLNAQPSVHLIHQRLQQLQTSRGFLSPSKKVEDKRETEGEKDDEAPVEDEVV 180

Query: 181 TTTTTTMTTIRAVEEKPQIDLNEFLQQLGIMKEEKVIESSEGEEGNGGCCLGSESSNNNL 240
           TTTTTTMTTIRAVEEKPQIDLNEFLQQLGIMKEEKVIESSEGEEGNGGCCLGSESSNNNL
Sbjct: 181 TTTTTTMTTIRAVEEKPQIDLNEFLQQLGIMKEEKVIESSEGEEGNGGCCLGSESSNNNL 240

Query: 241 KDHYSDELEVLSDKSFNWDSIMDVNANIEDLHHHHHHQIGNFEVYDYVHNYEDDLSFPNS 300
           KDHYSDELEVLSDKSFNWDSIMDVNANIEDLHHHHHHQIGNFEVYDYVHNYEDDLSFPNS
Sbjct: 241 KDHYSDELEVLSDKSFNWDSIMDVNANIEDLHHHHHHQIGNFEVYDYVHNYEDDLSFPNS 300

Query: 301 IWDFQEDHSTGIIP 315
           IWDFQEDHSTGIIP
Sbjct: 301 IWDFQEDHSTGIIP 314

[Close]

BLAST of CmoCh06G000690.1 vs. ExPASy TrEMBL
Match: A0A6J1I3D8 (dehydration-responsive element-binding protein 2F-like OS=Cucurbita maxima OX=3661 GN=LOC111470171 PE=4 SV=1)

HSP 1 Score: 608.2 bits (1567), Expect = 1.9e-170
Identity = 307/316 (97.15%), Postives = 309/316 (97.78%), Query Frame = 0


Query: 1   MDSGSRDKKSHSPLLKPWKKGPSRGKGGPLNASCEYRGVRQRTWGKWVAEIREPKKRTRL 60
           MDSGSRDKKSHSPLLKPWKKGPSRGKGGPLNASCEYRGVRQRTWGKWVAEIREPKKRTRL
Sbjct: 1   MDSGSRDKKSHSPLLKPWKKGPSRGKGGPLNASCEYRGVRQRTWGKWVAEIREPKKRTRL 60

Query: 61  WLGSFATAEEAAMAYDQAATRLYGPDAYLNLPHLQPNSSAAKSNIFKWVPSKNFISMFPH 120
           WLGSFATAEEAAMAYDQAATRLYGPDAYLNLPHLQPNSSAAKSNIFKWVPSKNFISMFPH
Sbjct: 61  WLGSFATAEEAAMAYDQAATRLYGPDAYLNLPHLQPNSSAAKSNIFKWVPSKNFISMFPH 120

Query: 121 HRPAGFMLNLNAQPSVHLIHQRLQQLQTSRGFLSPSKKVEDKRETEGEKDDEAPVEDEVV 180
           HRPAGFMLNLNAQPSVHLIHQRLQQLQTSRGFLSPSKKVEDKRETEGEKDDEAPVED+ V
Sbjct: 121 HRPAGFMLNLNAQPSVHLIHQRLQQLQTSRGFLSPSKKVEDKRETEGEKDDEAPVEDKEV 180

Query: 181 TTTTTTMTTIRAVEEKPQIDLNEFLQQLGIMK--EEKVIESSEGEEGNGGCCLGSESSNN 240
           TTTTT   TIRAVEEKPQIDLNEFLQQLGIMK  EEKVIESSEGEEGNGGC LGSESSNN
Sbjct: 181 TTTTT--ATIRAVEEKPQIDLNEFLQQLGIMKGEEEKVIESSEGEEGNGGCFLGSESSNN 240

Query: 241 NLKDHYSDELEVLSDKSFNWDSIMDVNANIEDLHHHHHHQIGNFEVYDYVHNYEDDLSFP 300
           NLKDHYSDELEVLSDKSFNWDSIMDV+ANIEDLHHHHHHQIGNFEVYDYVHNYEDDLSFP
Sbjct: 241 NLKDHYSDELEVLSDKSFNWDSIMDVHANIEDLHHHHHHQIGNFEVYDYVHNYEDDLSFP 300

Query: 301 NSIWDFQEDHSTGIIP 315
           NSIWDFQEDHSTGIIP
Sbjct: 301 NSIWDFQEDHSTGIIP 314

[Close]

BLAST of CmoCh06G000690.1 vs. ExPASy TrEMBL
Match: A0A6J1J4K5 (dehydration-responsive element-binding protein 2F OS=Cucurbita maxima OX=3661 GN=LOC111481704 PE=4 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 1.9e-101
Identity = 218/325 (67.08%), Postives = 248/325 (76.31%), Query Frame = 0


Query: 6   RDKKSH-SPLLKPWKKGPSRGKGGPLNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGS 65
           RDKK H SPL+KPWKKGPSRGKGGP NASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGS
Sbjct: 5   RDKKVHSSPLVKPWKKGPSRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGS 64

Query: 66  FATAEEAAMAYDQAATRLYGPDAYLNLPHLQPN------SSAAKSNIFKWVPSKNFISMF 125
           FATAEEAAMAYDQAAT+LYGPDAYLNLPHL  N      ++ + SN  KWVPSKNF+S+F
Sbjct: 65  FATAEEAAMAYDQAATKLYGPDAYLNLPHLLHNLPRNDINNGSISNFLKWVPSKNFVSLF 124

Query: 126 PHHRPAGFMLNLNAQPSVHLIHQRLQQLQTSRGFL-----SPSKKVEDKRETEGEKDDEA 185
           P+ RPA FMLNLNAQPS++LIHQRLQQL+T  GFL     SPSKK+ED  E +  K+DEA
Sbjct: 125 PNPRPATFMLNLNAQPSLNLIHQRLQQLRT-HGFLSPSLPSPSKKLED--ENKNGKEDEA 184

Query: 186 PVEDEVVTTTTTTMTTIRAVEEKPQIDLNEFLQQLGIMK---EEKVIESSEGEEGNGGCC 245
            + +E      TT  T+  VE+KPQIDLNEFLQQLGI+K   EEK +  SEGEEG     
Sbjct: 185 SLGEE------TTTVTMDMVEDKPQIDLNEFLQQLGIIKEEVEEKSVIESEGEEGINN-- 244

Query: 246 LGSESS-NNNLKDHYSDELEVLSDKSFNWDSIMDVNANIEDLHHHHHHQIGNFEVYDYVH 305
              E+  NN LKD  SDE+EV+SD+SFNWDSIM+++ NIE      HH  GNF+VY   +
Sbjct: 245 -NKEAELNNCLKDDPSDEVEVVSDESFNWDSIMEMHQNIE------HHHFGNFQVY---N 304

Query: 306 NYEDDLSFPNSIWDFQEDHSTGIIP 315
            YEDDLSF NSIWDF+E HS  IIP
Sbjct: 305 RYEDDLSFSNSIWDFEEHHSMTIIP 308

[Close]

BLAST of CmoCh06G000690.1 vs. ExPASy TrEMBL
Match: A0A6J1DJT0 (dehydration-responsive element-binding protein 2F OS=Momordica charantia OX=3673 GN=LOC111021546 PE=4 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 3.2e-101
Identity = 211/315 (66.98%), Postives = 241/315 (76.51%), Query Frame = 0


Query: 16  KPWKKGPSRGKGGPLNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAY 75
           KPWKKGPSRGKGGP NASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAY
Sbjct: 11  KPWKKGPSRGKGGPDNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAY 70

Query: 76  DQAATRLYGPDAYLNLPHLQPNSSAAKS-----NIFKWVPSKNFISMF--PHHRPAGFML 135
           D AA RLYGPDAYLNLPHL PN + + +       FKWVPSKNF++MF  P H     ML
Sbjct: 71  DDAARRLYGPDAYLNLPHLLPNYNDSNNFKQVVKKFKWVPSKNFMAMFPWPGHGRGNLML 130

Query: 136 NLNAQPSVHLIHQRLQQLQTSRGFLS---------PSKKVEDKRETEGEKDDEAPVEDEV 195
           NLNAQPSVH+IHQRLQQLQ+    LS         P K +E+K +   E+DDEA V +  
Sbjct: 131 NLNAQPSVHVIHQRLQQLQSRTRLLSSSSSLPSPPPKKVLENKVKGGKERDDEASVGE-- 190

Query: 196 VTTTTTTMTTIRAV-EEKPQIDLNEFLQQLGIMKEEKVIESSEGEEGNGGCCLGSESSNN 255
              TT + TT+RA+ EEKPQIDLNEFLQQLGI+KEE+ +  SEGEE  GGC LGSES   
Sbjct: 191 ---TTASTTTVRALGEEKPQIDLNEFLQQLGILKEEEKVGESEGEEAIGGCSLGSESC-- 250

Query: 256 NLKDHYSDELEVLSDKSFNWDSIMDVNANIEDLHHHH---HHQIGNFEVYDYVHNYEDDL 311
           +LKD+YS+ELEVLSDK+FNWDS M++   I   H+H+    HQI NF+VYDYV+ YEDDL
Sbjct: 251 DLKDNYSEELEVLSDKTFNWDSFMEMQDIIGHDHNHNGGTDHQIRNFQVYDYVNYYEDDL 310

[Close]

BLAST of CmoCh06G000690.1 vs. ExPASy TrEMBL
Match: A0A0A0LBF0 (AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G812170 PE=4 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 7.2e-101
Identity = 219/342 (64.04%), Postives = 250/342 (73.10%), Query Frame = 0


Query: 1   MDSGSRDKKSH-SPL-LKPWKKGPSRGKGGPLNASCEYRGVRQRTWGKWVAEIREPKKRT 60
           M++G  +KK H SP   KPWKKGPSRGKGGP NASCEYRGVRQRTWGKWVAEIREPKKRT
Sbjct: 1   MENGRDNKKPHTSPFHHKPWKKGPSRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRT 60

Query: 61  RLWLGSFATAEEAAMAYDQAATRLYGPDAYLNLPHL---QPNSSAAKSNIFKWVPSKNFI 120
           RLWLGSF+TAEEAAMAYDQAAT+LYGP AYLNLPHL     +SS  KSN  KWVPSKNFI
Sbjct: 61  RLWLGSFSTAEEAAMAYDQAATKLYGPHAYLNLPHLANQNNDSSDYKSNFVKWVPSKNFI 120

Query: 121 SMFPH-HRPAGFMLNLNAQPSVHLIHQRLQQLQTSRGFL------SPSKKVEDKRETEGE 180
           S+FPH +R A  +    +  S+HLIHQRLQQL+    FL      SPSKK+EDK E E +
Sbjct: 121 SLFPHTNRAAATVATTGSFMSLHLIHQRLQQLKPPHPFLSSNSLTSPSKKLEDKGEKEKD 180

Query: 181 KDDEAPVEDEVVTTTTTTMTTIRAVEEKPQIDLNEFLQQLGIMK--EEKVIESSEGEEGN 240
           KD+EA V +E  TTT TT T+    EEKPQIDLNEFLQQLGI+K  EEK++   E E+GN
Sbjct: 181 KDEEASVREE--TTTKTTATSSGKEEEKPQIDLNEFLQQLGILKEEEEKLVIELEEEKGN 240

Query: 241 --------------GGCCLGSESSNNNLKDHYSDELEVLSDKSFNWDSIMDVNANIEDLH 300
                         GGCCLGS   +NN    YSDE+EVLSDKSFNWDSIM+++ NIED H
Sbjct: 241 NNNKDNDIDNYNDDGGCCLGSSEISNNC--DYSDEVEVLSDKSFNWDSIMEIHPNIEDNH 300

Query: 301 HHHHHQIGNFEVYD-YVHNYEDDLSFPNSIWDFQEDHSTGII 314
                  GNF++YD +  NYED+L FPNSIWDF+EDHST II
Sbjct: 301 ------FGNFQLYDHHFLNYEDELGFPNSIWDFEEDHSTRII 332

[Close]

BLAST of CmoCh06G000690.1 vs. TAIR 10
Match: AT3G57600.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 232.3 bits (591), Expect = 5.5e-61
Identity = 145/299 (48.49%), Postives = 183/299 (61.20%), Query Frame = 0


Query: 12  SPLLKPWKKGPSRGKGGPLNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEA 71
           S  +K WKKGP+RGKGGP NA C+YRGVRQRTWGKWVAEIREPKKR RLWLGSFATAEEA
Sbjct: 4   SSSMKQWKKGPARGKGGPQNALCQYRGVRQRTWGKWVAEIREPKKRARLWLGSFATAEEA 63

Query: 72  AMAYDQAATRLYGPDAYLNLPHLQPNS--SAAKSNIFKWVPSKNFISMFPHHRPAGFMLN 131
           AMAYD+AA +LYG DAYLNLPHLQ N+  S + S  FKWVPS+ FISMF    P+  MLN
Sbjct: 64  AMAYDEAALKLYGHDAYLNLPHLQRNTRPSLSNSQRFKWVPSRKFISMF----PSCGMLN 123

Query: 132 LNAQPSVHLIHQRLQQLQ----TSRGFLSPSKKVEDKRETEGEKDDEAPVEDEVVTTTTT 191
           +NAQPSVH+I QRL++L+     S+ + S S   E K  T           DE  +   T
Sbjct: 124 VNAQPSVHIIQQRLEELKKTGLLSQSYSSSSSSTESKTNTS--------FLDEKTSKGET 183

Query: 192 TMTTIRAVEEKPQIDLNEFLQQLGIMKEEKVIESSEGEEGNGGCCLGSESSNNNLKDHYS 251
                   ++KP+IDL EFLQQLGI+K+E   E SE  E     C      N        
Sbjct: 184 DNMFEGGDQKKPEIDLTEFLQQLGILKDENEAEPSEVAE-----CHSPPPWNEQ-----E 243

Query: 252 DELEVLSDKSFNWDSIMDVNANIEDLHHHHHHQIGNFEVYDYVHNYEDDLSFPNSIWDF 305
           +       ++F+WD+++++  +            G+++       +EDD+SFP SIWD+
Sbjct: 244 ETGSPFRTENFSWDTLIEMPRSETTTMQFDSSNFGSYD-------FEDDVSFP-SIWDY 272

[Close]

BLAST of CmoCh06G000690.1 vs. TAIR 10
Match: AT1G75490.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 122.5 bits (306), Expect = 6.1e-28
Identity = 60/96 (62.50%), Postives = 71/96 (73.96%), Query Frame = 0


Query: 19  KKGPSRGKGGPLNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDQA 78
           +KG  RGKGGP NASC Y+GVRQRTWGKWVAEIREP +  RLWLG+F T+ EAA+AYD A
Sbjct: 25  RKGCMRGKGGPDNASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSREAALAYDSA 84

Query: 79  ATRLYGPDAYLNLPH-LQPNSSAAKSNIFKWVPSKN 114
           A +LYGP+A+LNLP  L+     A S   +  PS N
Sbjct: 85  ARKLYGPEAHLNLPESLRSYPKTASSPASQTTPSSN 120

[Close]

BLAST of CmoCh06G000690.1 vs. TAIR 10
Match: AT5G18450.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 115.5 bits (288), Expect = 7.5e-26
Identity = 54/77 (70.13%), Postives = 64/77 (83.12%), Query Frame = 0


Query: 19 KKGPSRGKGGPLNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDQA 78
          +KG  +GKGGP NA+C +RGVRQRTWGKWVAEIREP + TRLWLG+F T+ EAAMAYD+A
Sbjct: 17 RKGCMKGKGGPENATCTFRGVRQRTWGKWVAEIREPNRGTRLWLGTFNTSVEAAMAYDEA 76

Query: 79 ATRLYGPDAYLNLPHLQ 96
          A +LYG +A LNL H Q
Sbjct: 77 AKKLYGHEAKLNLVHPQ 93

[Close]

BLAST of CmoCh06G000690.1 vs. TAIR 10
Match: AT2G40220.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 111.3 bits (277), Expect = 1.4e-24
Identity = 53/81 (65.43%), Postives = 64/81 (79.01%), Query Frame = 0


Query: 24  RGKGGPLNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDQAATRLY 83
           +GKGGP N+   YRGVRQR+WGKWVAEIREP+KRTR WLG+FATAE+AA AYD+AA  LY
Sbjct: 43  KGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAVYLY 102

Query: 84  GPDAYLNLPHLQPNSSAAKSN 105
           G  A LNL    P+S ++ S+
Sbjct: 103 GSRAQLNLTPSSPSSVSSSSS 123

[Close]

BLAST of CmoCh06G000690.1 vs. TAIR 10
Match: AT2G40340.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 109.8 bits (273), Expect = 4.1e-24
Identity = 54/97 (55.67%), Postives = 66/97 (68.04%), Query Frame = 0


Query: 4   GSRDKKSHSPLLKPWKKGPSRGKGGPLNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLG 63
           G   K    P  K  +KG  +GKGGP N  C+YRGVRQR WGKWVAEIREP    RLWLG
Sbjct: 40  GGGPKSIRKPPPKGSRKGCMKGKGGPENGICDYRGVRQRRWGKWVAEIREPDGGARLWLG 99

Query: 64  SFATAEEAAMAYDQAATRLYGPDAYLNLPHLQPNSSA 101
           +F+++ EAA+AYD+AA  +YG  A LNLP +   SS+
Sbjct: 100 TFSSSYEAALAYDEAAKAIYGQSARLNLPEITNRSSS 136

The following BLAST results are available for this feature:

BLAST of CmoCh06G000690.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SVX5	7.7e-60	48.49	Dehydration-responsive element-binding protein 2F OS=Arabidopsis thaliana OX=370...	[more]
Q10R18	2.0e-47	40.12	Dehydration-responsive element-binding protein 2E OS=Oryza sativa subsp. japonic...	[more]
Q9LQZ2	8.6e-27	62.50	Dehydration-responsive element-binding protein 2D OS=Arabidopsis thaliana OX=370...	[more]
P61827	1.1e-24	70.13	Dehydration-responsive element-binding protein 2G OS=Arabidopsis thaliana OX=370...	[more]
A0MES8	2.0e-23	65.43	Ethylene-responsive transcription factor ABI4 OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of CmoCh06G000690.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FV94	4.3e-178	100.00	dehydration-responsive element-binding protein 2F OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1I3D8	1.9e-170	97.15	dehydration-responsive element-binding protein 2F-like OS=Cucurbita maxima OX=36...	[more]
A0A6J1J4K5	1.9e-101	67.08	dehydration-responsive element-binding protein 2F OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1DJT0	3.2e-101	66.98	dehydration-responsive element-binding protein 2F OS=Momordica charantia OX=3673...	[more]
A0A0A0LBF0	7.2e-101	64.04	AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G812170 PE=...	[more]

BLAST of CmoCh06G000690.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57600.1	5.5e-61	48.49	Integrase-type DNA-binding superfamily protein	[more]
AT1G75490.1	6.1e-28	62.50	Integrase-type DNA-binding superfamily protein	[more]
AT5G18450.1	7.5e-26	70.13	Integrase-type DNA-binding superfamily protein	[more]
AT2G40220.1	1.4e-24	65.43	Integrase-type DNA-binding superfamily protein	[more]
AT2G40340.1	4.1e-24	55.67	Integrase-type DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 58..74 score: 64.81 coord: 36..47 score: 72.58
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 35..98 e-value: 1.8E-38 score: 143.8
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 34..84 e-value: 2.8E-14 score: 53.1
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 35..92 score: 22.760784
IPR001471	AP2/ERF domain	CDD	cd00018	AP2	coord: 34..94 e-value: 1.0844E-31 score: 110.824
IPR036955	AP2/ERF domain superfamily	GENE3D	3.30.730.10	AP2/ERF domain	coord: 35..93 e-value: 8.6E-25 score: 88.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..169
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 150..180
None	No IPR available	PANTHER	PTHR31241	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C	coord: 12..300
None	No IPR available	PANTHER	PTHR31241:SF2	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2F	coord: 12..300
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 35..93

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh06G000690	CmoCh06G000690	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G000690.1:exon:9325	CmoCh06G000690.1:exon:9325	exon
CmoCh06G000690.1:exon:9326	CmoCh06G000690.1:exon:9326	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G000690.1:cds	CmoCh06G000690.1:cds	CDS
CmoCh06G000690.1:cds	CmoCh06G000690.1:cds_2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G000690.1:three_prime_utr	CmoCh06G000690.1:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh06G000690.1	CmoCh06G000690.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0000976	transcription cis-regulatory region binding