CmoCh06G000620.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G000620.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	WUSCHEL-related homeobox 11-like
Location	Cmo_Chr06: 391721 .. 393694 (-)
Sequence length	857
RNA-Seq Expression	CmoCh06G000620.1
Synteny	CmoCh06G000620.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACACAACTGGAAGAACAAACCCAACATTTTTATACCCCAACAAAAAGAAAAAAAGAAAAAAAAAAATTTCTTTTTGTGTTTTGTAATGGAAAATCACGGCGATGACCCAAACAGTCCAAATCTCAGCTCCGACAGGGCGGAGCCGGTGAGATCACGGTGGACGCCGAAGCCGGAGCAGATTCTGATTTTGGAGTCCATTTTCAACAGTGGAATGGTTAATCCACCCAAGGATGAGACCGTTAGAATTAGAAAGCTGCTTGAGAAATTTGGCTCTGTCGGAGATGCCAATGTTTTCTACTGGTTTCAAAACCGCCGCTCTCGGTCTCGCCGCCGCCAACGCCAGCTGCAGGCAGCTGCAAGCCACCAAGGTGGCAGTGCAATTCATTATGACAGTGGTTGCAGCGGTGGCAGTGTCATGAATTTTGCTCCTTCCTCTTCTTACCTTGGAGAAGGAGGCTCCTCCTCCTCCGGAGGCGGCGGTTTTTCGATGACCGATCACATGGGTATCTCTGAAATTGATCAGCCGATGGTTGTAACCCCCTCGTTTTGCCCTTCAGCAACCTCGAATTTAGAGTTCCAATCAGGTATGGGTATGCATGTTCGTTCAAACCCTCGTTTTATTTCACCAAAATATCAAAAAAAAAACACCAAAAAAAGGGTTTTTGATGAAGACCCAATAATCAAAATGGATGGAATATAGTAAATTTAGCATCTTTTTTTGATTCAGCTTTTTGAAGAGAGTTCCAATGAATTGTTCTCCTTTTGATGATGATGATGTGACAGTTCTTTCTTGAGCTGGAATTTTTGAACACTAATAGCATAAAAAAACGTTTGCTTTGAATTATTTGAATCGATTCACGGGTTTGAGCATTAAATTTTGTGTAAAAATGTTTGATTTTGAAGGTTATATTATAATATTCATAAATGGAGTTCCGACAGAAGTGCCAAAAGGAGCGGTGGACATGAAGGCAATGTTTGGGGATGACACAGTGTTGGTTCACTCCTCAGGACTCCCAGTTCTTACCAATGAATTTGGAATATCACTGCACAGTTTGCAGCATGGTGAAACCTACTTTCTGGTAATTATTCTCTCTCTTTCTCTGTTTTTGAGCCTCTTAAACTTTCTATCTTCCTTCTATAATTCAAACAAACACATAATCTAAGTCAATTTGAGTTGAAATTAGTACTAATCTCTGGGATGAACTCATGGAATTAGCTTAGGAGGGTTTTGGTGGAATGGTTAGTAAGTTAATTAAGATGTGTGTTCCTTTGGATTAGTGCTAGAGAGTTTGATGATGAACATAAACATTTGATTACTCTTAAAAAGATGAACAAAACACGCCATAATTTGATGTAATTTTATGCCAATCAACCCAAATGATGCCCTAAATTTAGGACTAAATGTTCTTATTAGCGGCATTAATTCACTAGGAATCTTCTCCTATAGACAACATAATACTACTTCAAATTTTCAATCCATTGAAATAGATTAACATTCTATAAATAAAACGGACAGACGATTAATCCTAATCTTTCATAGATCTAACTCAATCTAAAGATTGTGTCATAATCCATCATTTTTTTTAGCTCAACAATCTTGAAGGCAAGAAATCGAACTTCAACTTCCTTGTGAAGTGTATAATCATCTTAGTTATGTCCGATTGAGTTCATGTGAGAGTAGAAAAAAAAGGGAGGAATTCAAAGGGAATAGGAACTGGATATGTGGTTGAAATGACATGTCATATGATCATGGTAGCTATTCTTTAATTTGTATGCCAAATTCAATGGATGAACAAACCACAAAACACAAAAACAAAGGATGATGATGATGATGATATTAAGGTTAAGATTAATTGTGTGGAATCGTGGTCGCGCAGGTTTCAAGGCCGACATGAGTTAGGAAAGAAACCAGCTGCAACAGCAGCAGCAACAACAGCGCCTACCAACAAGAAAATTAAAAACAGCTCTCAGAT

mRNA sequence

CACACAACTGGAAGAACAAACCCAACATTTTTATACCCCAACAAAAAGAAAAAAAGAAAAAAAAAAATTTCTTTTTGTGTTTTGTAATGGAAAATCACGGCGATGACCCAAACAGTCCAAATCTCAGCTCCGACAGGGCGGAGCCGGTGAGATCACGGTGGACGCCGAAGCCGGAGCAGATTCTGATTTTGGAGTCCATTTTCAACAGTGGAATGGTTAATCCACCCAAGGATGAGACCGTTAGAATTAGAAAGCTGCTTGAGAAATTTGGCTCTGTCGGAGATGCCAATGTTTTCTACTGGTTTCAAAACCGCCGCTCTCGGTCTCGCCGCCGCCAACGCCAGCTGCAGGCAGCTGCAAGCCACCAAGGTGGCAGTGCAATTCATTATGACAGTGGTTGCAGCGGTGGCAGTGTCATGAATTTTGCTCCTTCCTCTTCTTACCTTGGAGAAGGAGGCTCCTCCTCCTCCGGAGGCGGCGGTTTTTCGATGACCGATCACATGGGTATCTCTGAAATTGATCAGCCGATGGTTGTAACCCCCTCGTTTTGCCCTTCAGCAACCTCGAATTTAGAGTTCCAATCAGGTTATATTATAATATTCATAAATGGAGTTCCGACAGAAGTGCCAAAAGGAGCGGTGGACATGAAGGCAATGTTTGGGGATGACACAGTGTTGGTTCACTCCTCAGGACTCCCAGTTCTTACCAATGAATTTGGAATATCACTGCACAGTTTGCAGCATGGTGAAACCTACTTTCTGGTTTCAAGGCCGACATGAGTTAGGAAAGAAACCAGCTGCAACAGCAGCAGCAACAACAGCGCCTACCAACAAGAAAATTAAAAACAGCTCTCAGAT

Coding sequence (CDS)

ATGGAAAATCACGGCGATGACCCAAACAGTCCAAATCTCAGCTCCGACAGGGCGGAGCCGGTGAGATCACGGTGGACGCCGAAGCCGGAGCAGATTCTGATTTTGGAGTCCATTTTCAACAGTGGAATGGTTAATCCACCCAAGGATGAGACCGTTAGAATTAGAAAGCTGCTTGAGAAATTTGGCTCTGTCGGAGATGCCAATGTTTTCTACTGGTTTCAAAACCGCCGCTCTCGGTCTCGCCGCCGCCAACGCCAGCTGCAGGCAGCTGCAAGCCACCAAGGTGGCAGTGCAATTCATTATGACAGTGGTTGCAGCGGTGGCAGTGTCATGAATTTTGCTCCTTCCTCTTCTTACCTTGGAGAAGGAGGCTCCTCCTCCTCCGGAGGCGGCGGTTTTTCGATGACCGATCACATGGGTATCTCTGAAATTGATCAGCCGATGGTTGTAACCCCCTCGTTTTGCCCTTCAGCAACCTCGAATTTAGAGTTCCAATCAGGTTATATTATAATATTCATAAATGGAGTTCCGACAGAAGTGCCAAAAGGAGCGGTGGACATGAAGGCAATGTTTGGGGATGACACAGTGTTGGTTCACTCCTCAGGACTCCCAGTTCTTACCAATGAATTTGGAATATCACTGCACAGTTTGCAGCATGGTGAAACCTACTTTCTGGTTTCAAGGCCGACATGA

Protein sequence

MENHGDDPNSPNLSSDRAEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQLQAAASHQGGSAIHYDSGCSGGSVMNFAPSSSYLGEGGSSSSGGGGFSMTDHMGISEIDQPMVVTPSFCPSATSNLEFQSGYIIIFINGVPTEVPKGAVDMKAMFGDDTVLVHSSGLPVLTNEFGISLHSLQHGETYFLVSRPT

Homology

[Close]

BLAST of CmoCh06G000620.1 vs. ExPASy Swiss-Prot
Match: Q6X7J3 (WUSCHEL-related homeobox 11 OS=Arabidopsis thaliana OX=3702 GN=WOX11 PE=2 SV=2)

HSP 1 Score: 245.7 bits (626), Expect = 5.0e-64
Identity = 144/257 (56.03%), Postives = 166/257 (64.59%), Query Frame = 0


Query: 4   HGDDPNSPNLSSDRAEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGS 63
           H   P S    S  AEPVRSRW+PKPEQILILESIF+SGMVNPPK+ETVRIRK+LEKFG+
Sbjct: 13  HSRSPPSSASGSTSAEPVRSRWSPKPEQILILESIFHSGMVNPPKEETVRIRKMLEKFGA 72

Query: 64  VGDANVFYWFQNRRSRSRRRQRQLQAAAS--------------------HQGGSAIHYDS 123
           VGDANVFYWFQNRRSRSRRRQRQLQAAA+                    H  GS + +  
Sbjct: 73  VGDANVFYWFQNRRSRSRRRQRQLQAAAAAADATTNTCDQTMMVSNSLPHHSGSDLGF-G 132

Query: 124 GCSGGSVMNFAPSSSYLGEGGSSSSGGGG---FSMTDHMGISEI------DQPMVVTPSF 183
           GCS  S   FA SSS  G G  + S  G     +M+  M   E       +    VT   
Sbjct: 133 GCSTSSNYLFASSSSSYGGGCDNQSNSGMENLLTMSGQMSYHEATHHHYQNHSSNVTSIL 192

Query: 184 CPS-ATSNLEFQSGYIIIFINGVPTEVPKGAVDMKAMFGDDTVLVHSSGLPVLTNEFGIS 231
           CPS   SN ++Q G I +FINGVPTEV +G +DMKA FG+D VLVHSSG+P+ T+EFG  
Sbjct: 193 CPSDQNSNFQYQQGAITVFINGVPTEVTRGGIDMKATFGEDLVLVHSSGVPLPTDEFGFL 252

[Close]

BLAST of CmoCh06G000620.1 vs. ExPASy Swiss-Prot
Match: Q8GY25 (WUSCHEL-related homeobox 12 OS=Arabidopsis thaliana OX=3702 GN=WOX12 PE=2 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 5.0e-56
Identity = 139/263 (52.85%), Postives = 162/263 (61.60%), Query Frame = 0


Query: 14  SSDRAEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWF 73
           SS   EPVR+RW+PKPEQILILESIFNSG VNPPKDETVRIRK+LEKFG+VGDANVFYWF
Sbjct: 11  SSTSTEPVRARWSPKPEQILILESIFNSGTVNPPKDETVRIRKMLEKFGAVGDANVFYWF 70

Query: 74  QNRRSRSRRRQRQLQAAAS----------HQGGSAIH-YDSGCSG-------GSVMNFAP 133
           QNRRSRSRRR RQL AA +          HQ  +A+  +   CS        GS  N   
Sbjct: 71  QNRRSRSRRRHRQLLAATTAAATSIGAEDHQHMTAMSMHQYPCSNNEIDLGFGSCSNL-- 130

Query: 134 SSSYLGEGGSS----------SSGGGG----------FSMTDHMGISEIDQ-------PM 193
           S++Y   G SS          SS  GG          F M  H       Q         
Sbjct: 131 SANYFLNGSSSSQIPSFFLGLSSSSGGCENNNGMENLFKMYGHESDHNHQQQHHSSNAAS 190

Query: 194 VVTPSFCPSATSNLEF-QSGYIIIFINGVPTEVPKGAVDMKAMFGDDTVLVHSSGLPVLT 231
           V+ PS      SN ++ Q G++ +FINGVP EV KGA+DMK MFGDD+VL+HSSGLP+ T
Sbjct: 191 VLNPS---DQNSNSQYEQEGFMTVFINGVPMEVTKGAIDMKTMFGDDSVLLHSSGLPLPT 250

[Close]

BLAST of CmoCh06G000620.1 vs. ExPASy Swiss-Prot
Match: B8B644 (WUSCHEL-related homeobox 11 OS=Oryza sativa subsp. indica OX=39946 GN=WOX11 PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 2.2e-51
Identity = 132/259 (50.97%), Postives = 160/259 (61.78%), Query Frame = 0


Query: 6   DDPNSPNLSSDRA--EPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGS 65
           D  +SP+  +  A  EPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLE+FG+
Sbjct: 2   DGGHSPDRHAAAAAGEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGA 61

Query: 66  VGDANVFYWFQNRRSRSRRRQRQLQAAASHQGGSAIHYD--SGCSGGSVMNFA--PSSSY 125
           VGDANVFYWFQNRRSRSRRRQRQLQA A     +A      +  SGG     A  P+SS 
Sbjct: 62  VGDANVFYWFQNRRSRSRRRQRQLQAQAQAAAAAASSGSPPTASSGGLAPGHAGSPASSL 121

Query: 126 -------LGEGGSSSS------------------GGGG---FSMTDHMGISEIDQPMVVT 185
                   G   SSSS                  GGGG   F+++  MG  +       +
Sbjct: 122 GMFAHGAAGYSSSSSSSWPSSPPSVGMMMGDVDYGGGGDDLFAISRQMGYMDGGGGSSSS 181

Query: 186 PSFCPSATSNLEF--QSGYIIIFINGVPTEVPKGAVDMKAMFGDDTVLVHSSGLPVLTNE 229
            +        L +  Q   + +FINGV TEVP+G +D+++MFG D +LVHS+G  +  NE
Sbjct: 182 AAAGQHQQQQLYYSCQPATMTVFINGVATEVPRGPIDLRSMFGQDVMLVHSTGALLPANE 241

[Close]

BLAST of CmoCh06G000620.1 vs. ExPASy Swiss-Prot
Match: Q0D3I7 (WUSCHEL-related homeobox 11 OS=Oryza sativa subsp. japonica OX=39947 GN=WOX11 PE=1 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 2.2e-51
Identity = 132/259 (50.97%), Postives = 160/259 (61.78%), Query Frame = 0


Query: 6   DDPNSPNLSSDRA--EPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGS 65
           D  +SP+  +  A  EPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLE+FG+
Sbjct: 2   DGGHSPDRHAAAAAGEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGA 61

Query: 66  VGDANVFYWFQNRRSRSRRRQRQLQAAASHQGGSAIHYD--SGCSGGSVMNFA--PSSSY 125
           VGDANVFYWFQNRRSRSRRRQRQLQA A     +A      +  SGG     A  P+SS 
Sbjct: 62  VGDANVFYWFQNRRSRSRRRQRQLQAQAQAAAAAASSGSPPTASSGGLAPGHAGSPASSL 121

Query: 126 -------LGEGGSSSS------------------GGGG---FSMTDHMGISEIDQPMVVT 185
                   G   SSSS                  GGGG   F+++  MG  +       +
Sbjct: 122 GMFAHGAAGYSSSSSSSWPSSPPSVGMMMGDVDYGGGGDDLFAISRQMGYMDGGGGSSSS 181

Query: 186 PSFCPSATSNLEF--QSGYIIIFINGVPTEVPKGAVDMKAMFGDDTVLVHSSGLPVLTNE 229
            +        L +  Q   + +FINGV TEVP+G +D+++MFG D +LVHS+G  +  NE
Sbjct: 182 AAAGQHQQQQLYYSCQPATMTVFINGVATEVPRGPIDLRSMFGQDVMLVHSTGALLPANE 241

[Close]

BLAST of CmoCh06G000620.1 vs. ExPASy Swiss-Prot
Match: A2XG77 (WUSCHEL-related homeobox 6 OS=Oryza sativa subsp. indica OX=39946 GN=WOX6 PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 2.2e-51
Identity = 136/298 (45.64%), Postives = 166/298 (55.70%), Query Frame = 0


Query: 15  SDRAEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQ 74
           S   EPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLE+FG+VGDANVFYWFQ
Sbjct: 33  SAAGEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQ 92

Query: 75  NRRSRSRRRQRQLQAAAS--------------------------------------HQGG 134
           NRRSRSRRRQRQ+QAAA+                                        GG
Sbjct: 93  NRRSRSRRRQRQMQAAAAAAAAAASSSSPSANTSPAAASAATVQVGLPPVAVVHTMAMGG 152

Query: 135 SAIHYD--------SGCSGGSVMN-FAPSSSYLGEGG----------SSSS--------- 194
           SA  Y+        SG +GGS +  FA  +   G GG          S+SS         
Sbjct: 153 SACQYEQQASSSSSSGSTGGSSLGLFAHGAGASGAGGYLQASCGASASASSALAPGLMGD 212

Query: 195 ---GGGG---FSMTDHMGI------SEIDQPMVVTPSFCPSATS----NLEFQSGYIIIF 231
               GG    F+++  MG       S    P   TPS   +A      + +  +  I +F
Sbjct: 213 VVDSGGSDDLFAISRQMGFVGSPRCSPASSP--ATPSSAATAAQQQFYSCQLPAATITVF 272

[Close]

BLAST of CmoCh06G000620.1 vs. ExPASy TrEMBL
Match: A0A6J1G3L9 (WUSCHEL-related homeobox 11-like OS=Cucurbita moschata OX=3662 GN=LOC111450454 PE=3 SV=1)

HSP 1 Score: 460.3 bits (1183), Expect = 4.7e-126
Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 0


Query: 1   MENHGDDPNSPNLSSDRAEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEK 60
           MENHGDDPNSPNLSSDRAEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEK
Sbjct: 1   MENHGDDPNSPNLSSDRAEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEK 60

Query: 61  FGSVGDANVFYWFQNRRSRSRRRQRQLQAAASHQGGSAIHYDSGCSGGSVMNFAPSSSYL 120
           FGSVGDANVFYWFQNRRSRSRRRQRQLQAAASHQGGSAIHYDSGCSGGSVMNFAPSSSYL
Sbjct: 61  FGSVGDANVFYWFQNRRSRSRRRQRQLQAAASHQGGSAIHYDSGCSGGSVMNFAPSSSYL 120

Query: 121 GEGGSSSSGGGGFSMTDHMGISEIDQPMVVTPSFCPSATSNLEFQSGYIIIFINGVPTEV 180
           GEGGSSSSGGGGFSMTDHMGISEIDQPMVVTPSFCPSATSNLEFQSGYIIIFINGVPTEV
Sbjct: 121 GEGGSSSSGGGGFSMTDHMGISEIDQPMVVTPSFCPSATSNLEFQSGYIIIFINGVPTEV 180

Query: 181 PKGAVDMKAMFGDDTVLVHSSGLPVLTNEFGISLHSLQHGETYFLVSRPT 231
           PKGAVDMKAMFGDDTVLVHSSGLPVLTNEFGISLHSLQHGETYFLVSRPT
Sbjct: 181 PKGAVDMKAMFGDDTVLVHSSGLPVLTNEFGISLHSLQHGETYFLVSRPT 230

[Close]

BLAST of CmoCh06G000620.1 vs. ExPASy TrEMBL
Match: A0A6J1I653 (WUSCHEL-related homeobox 11-like OS=Cucurbita maxima OX=3661 GN=LOC111470259 PE=3 SV=1)

HSP 1 Score: 450.3 bits (1157), Expect = 4.9e-123
Identity = 228/238 (95.80%), Postives = 229/238 (96.22%), Query Frame = 0


Query: 1   MENHGDDPNSPNLSSDRAEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEK 60
           MENHGDDPNSPNLSSDRAEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEK
Sbjct: 1   MENHGDDPNSPNLSSDRAEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEK 60

Query: 61  FGSVGDANVFYWFQNRRSRSRRRQRQLQAAASHQGGSAIHYDSGCSGGSVMNFAPSSSYL 120
           FGSVGDANVFYWFQNRRSRSRRRQRQLQAAA+HQGGSAIHYDSGC GGSVMNFAPSSSYL
Sbjct: 61  FGSVGDANVFYWFQNRRSRSRRRQRQLQAAATHQGGSAIHYDSGCGGGSVMNFAPSSSYL 120

Query: 121 GEGGSSSS--------GGGGFSMTDHMGISEIDQPMVVTPSFCPSATSNLEFQSGYIIIF 180
           GEGGSSSS        GGGGFSMTDHMGISEIDQPMVVTPSFCPSATSNLEFQSGYIIIF
Sbjct: 121 GEGGSSSSSSSASASGGGGGFSMTDHMGISEIDQPMVVTPSFCPSATSNLEFQSGYIIIF 180

Query: 181 INGVPTEVPKGAVDMKAMFGDDTVLVHSSGLPVLTNEFGISLHSLQHGETYFLVSRPT 231
           INGVPTEVPKGAVDMKAMFGDDTVLVHSSGLPVLTNEFGISLHSLQHGETYFLVSRPT
Sbjct: 181 INGVPTEVPKGAVDMKAMFGDDTVLVHSSGLPVLTNEFGISLHSLQHGETYFLVSRPT 238

[Close]

BLAST of CmoCh06G000620.1 vs. ExPASy TrEMBL
Match: A0A0A0LC01 (Homeobox domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G812740 PE=3 SV=1)

HSP 1 Score: 375.2 bits (962), Expect = 2.0e-100
Identity = 204/257 (79.38%), Postives = 215/257 (83.66%), Query Frame = 0


Query: 1   MENHGDDPNSPNLSSDRAEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEK 60
           MENHGDDPNSPN   +RAEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEK
Sbjct: 1   MENHGDDPNSPNQGCERAEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEK 60

Query: 61  FGSVGDANVFYWFQNRRSRSRRRQRQLQAAASHQGGS-AIHYD------SGCSGGS--VM 120
           FGSVGDANVFYWFQNRRSRSRRRQRQLQAAA+HQG + AIHYD       G +GGS  +M
Sbjct: 61  FGSVGDANVFYWFQNRRSRSRRRQRQLQAAATHQGSTGAIHYDCGNVSSGGYNGGSGGIM 120

Query: 121 NFA-PSSSYLGEGGSSSS---------------GGGGFSMTDHMGISEIDQPMVV--TPS 180
           NFA  SSSYLG G SSSS               G  GFSM+ HMG SE+DQ MVV  TPS
Sbjct: 121 NFAGVSSSYLGGGSSSSSSSASGVGGDCSGGSGGSSGFSMSGHMGFSEVDQQMVVTSTPS 180

Query: 181 FCPSATSNLEFQSGYIIIFINGVPTEVPKGAVDMKAMFGDDTVLVHSSGLPVLTNEFGIS 231
           FCPS TSNLEFQSGYIIIFINGVPTEVPKGAVDMKAMFG++TVLVHSSGLPVLTNEFGIS
Sbjct: 181 FCPSETSNLEFQSGYIIIFINGVPTEVPKGAVDMKAMFGEETVLVHSSGLPVLTNEFGIS 240

[Close]

BLAST of CmoCh06G000620.1 vs. ExPASy TrEMBL
Match: A0A1S3B7B1 (WUSCHEL-related homeobox 11 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486815 PE=3 SV=1)

HSP 1 Score: 375.2 bits (962), Expect = 2.0e-100
Identity = 204/257 (79.38%), Postives = 215/257 (83.66%), Query Frame = 0


Query: 1   MENHGDDPNSPNLSSDRAEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEK 60
           MENHGDDPNSPN   +RAEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEK
Sbjct: 1   MENHGDDPNSPNHGCERAEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEK 60

Query: 61  FGSVGDANVFYWFQNRRSRSRRRQRQLQAAASHQG-GSAIHYD------SGCSGGS--VM 120
           FGSVGDANVFYWFQNRRSRSRRRQRQLQAAA+HQG  SAIHYD       G +GGS  +M
Sbjct: 61  FGSVGDANVFYWFQNRRSRSRRRQRQLQAAATHQGSSSAIHYDCGNVSSGGYNGGSGGIM 120

Query: 121 NFA-PSSSYLGEGGSSSS---------------GGGGFSMTDHMGISEIDQPMVV--TPS 180
           NFA  SSSY+G G SSSS               G  GFSM+ HMG SE+DQ MVV  TPS
Sbjct: 121 NFAGVSSSYIGGGSSSSSSSASGVGGDCSGGSGGSSGFSMSGHMGFSEVDQQMVVTSTPS 180

Query: 181 FCPSATSNLEFQSGYIIIFINGVPTEVPKGAVDMKAMFGDDTVLVHSSGLPVLTNEFGIS 231
           FCPS TSNLEFQSGYIIIFINGVPTEVPKGAVDMKAMFG++TVLVHSSGLPVLTNEFGIS
Sbjct: 181 FCPSETSNLEFQSGYIIIFINGVPTEVPKGAVDMKAMFGEETVLVHSSGLPVLTNEFGIS 240

[Close]

BLAST of CmoCh06G000620.1 vs. ExPASy TrEMBL
Match: A0A6J1F5D3 (WUSCHEL-related homeobox 11-like OS=Cucurbita moschata OX=3662 GN=LOC111442307 PE=3 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 1.1e-93
Identity = 197/251 (78.49%), Postives = 203/251 (80.88%), Query Frame = 0


Query: 1   MENHGDDPNSPNLSSDRAEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEK 60
           MENHGDDPN    SS+RAEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEK
Sbjct: 1   MENHGDDPN----SSERAEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEK 60

Query: 61  FGSVGDANVFYWFQNRRSRSRRRQRQLQAAASHQ---GGSAIHYDSGCSGG----SVMNF 120
           FGSVGDANVFYWFQNRRSRSRRRQRQLQAAA+HQ   GG       G +GG     VMNF
Sbjct: 61  FGSVGDANVFYWFQNRRSRSRRRQRQLQAAATHQATGGGGGGGGGGGDNGGRYNSGVMNF 120

Query: 121 APSSSYLGEGGSSSS-------GGGG------FSMTDHMGISEIDQPMVVTPSFCPSATS 180
           A SSSY G G SSSS       GGGG      FSM  HMG+SEIDQ M V PSFCP  T 
Sbjct: 121 AGSSSYFGGGSSSSSSSASGGGGGGGSSESGCFSMVGHMGLSEIDQQMGVAPSFCPPETL 180

Query: 181 NLEFQSGY-IIIFINGVPTEVPKGAVDMKAMFGDDTVLVHSSGLPVLTNEFGISLHSLQH 231
           NLEFQSGY IIIFINGVPTEVPKG VDMKAMFG +TVLVHSSGLPVLTNEFGISLHSLQH
Sbjct: 181 NLEFQSGYNIIIFINGVPTEVPKGPVDMKAMFGQETVLVHSSGLPVLTNEFGISLHSLQH 240

[Close]

BLAST of CmoCh06G000620.1 vs. TAIR 10
Match: AT3G03660.1 (WUSCHEL related homeobox 11 )

HSP 1 Score: 245.7 bits (626), Expect = 3.5e-65
Identity = 144/257 (56.03%), Postives = 166/257 (64.59%), Query Frame = 0


Query: 4   HGDDPNSPNLSSDRAEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGS 63
           H   P S    S  AEPVRSRW+PKPEQILILESIF+SGMVNPPK+ETVRIRK+LEKFG+
Sbjct: 13  HSRSPPSSASGSTSAEPVRSRWSPKPEQILILESIFHSGMVNPPKEETVRIRKMLEKFGA 72

Query: 64  VGDANVFYWFQNRRSRSRRRQRQLQAAAS--------------------HQGGSAIHYDS 123
           VGDANVFYWFQNRRSRSRRRQRQLQAAA+                    H  GS + +  
Sbjct: 73  VGDANVFYWFQNRRSRSRRRQRQLQAAAAAADATTNTCDQTMMVSNSLPHHSGSDLGF-G 132

Query: 124 GCSGGSVMNFAPSSSYLGEGGSSSSGGGG---FSMTDHMGISEI------DQPMVVTPSF 183
           GCS  S   FA SSS  G G  + S  G     +M+  M   E       +    VT   
Sbjct: 133 GCSTSSNYLFASSSSSYGGGCDNQSNSGMENLLTMSGQMSYHEATHHHYQNHSSNVTSIL 192

Query: 184 CPS-ATSNLEFQSGYIIIFINGVPTEVPKGAVDMKAMFGDDTVLVHSSGLPVLTNEFGIS 231
           CPS   SN ++Q G I +FINGVPTEV +G +DMKA FG+D VLVHSSG+P+ T+EFG  
Sbjct: 193 CPSDQNSNFQYQQGAITVFINGVPTEVTRGGIDMKATFGEDLVLVHSSGVPLPTDEFGFL 252

[Close]

BLAST of CmoCh06G000620.1 vs. TAIR 10
Match: AT3G03660.2 (WUSCHEL related homeobox 11 )

HSP 1 Score: 236.5 bits (602), Expect = 2.1e-62
Identity = 147/286 (51.40%), Postives = 171/286 (59.79%), Query Frame = 0


Query: 4   HGDDPNSPNLSSDRAEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGS 63
           H   P S    S  AEPVRSRW+PKPEQILILESIF+SGMVNPPK+ETVRIRK+LEKFG+
Sbjct: 13  HSRSPPSSASGSTSAEPVRSRWSPKPEQILILESIFHSGMVNPPKEETVRIRKMLEKFGA 72

Query: 64  VGDANVFYWFQNRRSRSRRRQRQLQAAAS--------------------HQGGSAIHYDS 123
           VGDANVFYWFQNRRSRSRRRQRQLQAAA+                    H  GS + +  
Sbjct: 73  VGDANVFYWFQNRRSRSRRRQRQLQAAAAAADATTNTCDQTMMVSNSLPHHSGSDLGF-G 132

Query: 124 GCS-------GGS--VMNF-----------APSSSYLGEGGSSSSGGGGFSMTDHMGISE 183
           GCS       GGS  V +F           + SSS      SSSS GGG     + G+  
Sbjct: 133 GCSTSSNYLFGGSSQVPSFFLGLSSSPSSCSSSSSTSSSASSSSSYGGGCDNQSNSGMEN 192

Query: 184 I------------------DQPMVVTPSFCPS-ATSNLEFQSGYIIIFINGVPTEVPKGA 231
           +                  +    VT   CPS   SN ++Q G I +FINGVPTEV +G 
Sbjct: 193 LLTMSGQMSYHEATHHHYQNHSSNVTSILCPSDQNSNFQYQQGAITVFINGVPTEVTRGG 252

[Close]

BLAST of CmoCh06G000620.1 vs. TAIR 10
Match: AT5G17810.1 (WUSCHEL related homeobox 12 )

HSP 1 Score: 219.2 bits (557), Expect = 3.5e-57
Identity = 139/263 (52.85%), Postives = 162/263 (61.60%), Query Frame = 0


Query: 14  SSDRAEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWF 73
           SS   EPVR+RW+PKPEQILILESIFNSG VNPPKDETVRIRK+LEKFG+VGDANVFYWF
Sbjct: 11  SSTSTEPVRARWSPKPEQILILESIFNSGTVNPPKDETVRIRKMLEKFGAVGDANVFYWF 70

Query: 74  QNRRSRSRRRQRQLQAAAS----------HQGGSAIH-YDSGCSG-------GSVMNFAP 133
           QNRRSRSRRR RQL AA +          HQ  +A+  +   CS        GS  N   
Sbjct: 71  QNRRSRSRRRHRQLLAATTAAATSIGAEDHQHMTAMSMHQYPCSNNEIDLGFGSCSNL-- 130

Query: 134 SSSYLGEGGSS----------SSGGGG----------FSMTDHMGISEIDQ-------PM 193
           S++Y   G SS          SS  GG          F M  H       Q         
Sbjct: 131 SANYFLNGSSSSQIPSFFLGLSSSSGGCENNNGMENLFKMYGHESDHNHQQQHHSSNAAS 190

Query: 194 VVTPSFCPSATSNLEF-QSGYIIIFINGVPTEVPKGAVDMKAMFGDDTVLVHSSGLPVLT 231
           V+ PS      SN ++ Q G++ +FINGVP EV KGA+DMK MFGDD+VL+HSSGLP+ T
Sbjct: 191 VLNPS---DQNSNSQYEQEGFMTVFINGVPMEVTKGAIDMKTMFGDDSVLLHSSGLPLPT 250

[Close]

BLAST of CmoCh06G000620.1 vs. TAIR 10
Match: AT5G17810.2 (WUSCHEL related homeobox 12 )

HSP 1 Score: 219.2 bits (557), Expect = 3.5e-57
Identity = 139/263 (52.85%), Postives = 162/263 (61.60%), Query Frame = 0


Query: 14  SSDRAEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWF 73
           SS   EPVR+RW+PKPEQILILESIFNSG VNPPKDETVRIRK+LEKFG+VGDANVFYWF
Sbjct: 11  SSTSTEPVRARWSPKPEQILILESIFNSGTVNPPKDETVRIRKMLEKFGAVGDANVFYWF 70

Query: 74  QNRRSRSRRRQRQLQAAAS----------HQGGSAIH-YDSGCSG-------GSVMNFAP 133
           QNRRSRSRRR RQL AA +          HQ  +A+  +   CS        GS  N   
Sbjct: 71  QNRRSRSRRRHRQLLAATTAAATSIGAEDHQHMTAMSMHQYPCSNNEIDLGFGSCSNL-- 130

Query: 134 SSSYLGEGGSS----------SSGGGG----------FSMTDHMGISEIDQ-------PM 193
           S++Y   G SS          SS  GG          F M  H       Q         
Sbjct: 131 SANYFLNGSSSSQIPSFFLGLSSSSGGCENNNGMENLFKMYGHESDHNHQQQHHSSNAAS 190

Query: 194 VVTPSFCPSATSNLEF-QSGYIIIFINGVPTEVPKGAVDMKAMFGDDTVLVHSSGLPVLT 231
           V+ PS      SN ++ Q G++ +FINGVP EV KGA+DMK MFGDD+VL+HSSGLP+ T
Sbjct: 191 VLNPS---DQNSNSQYEQEGFMTVFINGVPMEVTKGAIDMKTMFGDDSVLLHSSGLPLPT 250

[Close]

BLAST of CmoCh06G000620.1 vs. TAIR 10
Match: AT5G45980.1 (WUSCHEL related homeobox 8 )

HSP 1 Score: 120.2 bits (300), Expect = 2.2e-27
Identity = 89/287 (31.01%), Postives = 133/287 (46.34%), Query Frame = 0


Query: 10  SPNLSSDRAEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANV 69
           S + SSDR    + RW PKPEQI ILESIFNSG +NPP++E  RIR  L+++G +GDANV
Sbjct: 41  SSSFSSDRIPDPKPRWNPKPEQIRILESIFNSGTINPPREEIQRIRIRLQEYGQIGDANV 100

Query: 70  FYWFQNRRSRSRRRQR-------------------------------------------- 129
           FYWFQNR+SR++ + R                                            
Sbjct: 101 FYWFQNRKSRAKHKLRVHHKSPKMSKKDKTVIPSTDADHCFGFVNQETGLYPVQNNELVV 160

Query: 130 ---------------QLQAA----------ASHQGGSAIHYDSGCSGGSVMNFAPSSSYL 189
                            Q+A           + +G +    ++G +  +  NF    +  
Sbjct: 161 TEPAGFLFPVHNDPSAAQSAFGFGDFVVPVVTEEGMAFSTVNNGVNLETNENFDKIPAIN 220

Query: 190 GEGGSSSSGGGGF-SMTDHMGISEIDQPMVVTPSFCPSATSNLEFQSGYIIIFINGVPTE 227
             GG  + GG  F  +T  + I++  +   V  S       N+      + +FIN +P E
Sbjct: 221 LYGGDGNGGGNCFPPLTVPLTINQSQEKRDVGLSGGEDVGDNV--YPVRMTVFINEMPIE 280

The following BLAST results are available for this feature:

BLAST of CmoCh06G000620.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6X7J3	5.0e-64	56.03	WUSCHEL-related homeobox 11 OS=Arabidopsis thaliana OX=3702 GN=WOX11 PE=2 SV=2	[more]
Q8GY25	5.0e-56	52.85	WUSCHEL-related homeobox 12 OS=Arabidopsis thaliana OX=3702 GN=WOX12 PE=2 SV=1	[more]
B8B644	2.2e-51	50.97	WUSCHEL-related homeobox 11 OS=Oryza sativa subsp. indica OX=39946 GN=WOX11 PE=3...	[more]
Q0D3I7	2.2e-51	50.97	WUSCHEL-related homeobox 11 OS=Oryza sativa subsp. japonica OX=39947 GN=WOX11 PE...	[more]
A2XG77	2.2e-51	45.64	WUSCHEL-related homeobox 6 OS=Oryza sativa subsp. indica OX=39946 GN=WOX6 PE=3 S...	[more]

BLAST of CmoCh06G000620.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G3L9	4.7e-126	100.00	WUSCHEL-related homeobox 11-like OS=Cucurbita moschata OX=3662 GN=LOC111450454 P...	[more]
A0A6J1I653	4.9e-123	95.80	WUSCHEL-related homeobox 11-like OS=Cucurbita maxima OX=3661 GN=LOC111470259 PE=...	[more]
A0A0A0LC01	2.0e-100	79.38	Homeobox domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G812740 PE...	[more]
A0A1S3B7B1	2.0e-100	79.38	WUSCHEL-related homeobox 11 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486815 P...	[more]
A0A6J1F5D3	1.1e-93	78.49	WUSCHEL-related homeobox 11-like OS=Cucurbita moschata OX=3662 GN=LOC111442307 P...	[more]

BLAST of CmoCh06G000620.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G03660.1	3.5e-65	56.03	WUSCHEL related homeobox 11	[more]
AT3G03660.2	2.1e-62	51.40	WUSCHEL related homeobox 11	[more]
AT5G17810.1	3.5e-57	52.85	WUSCHEL related homeobox 12	[more]
AT5G17810.2	3.5e-57	52.85	WUSCHEL related homeobox 12	[more]
AT5G45980.1	2.2e-27	31.01	WUSCHEL related homeobox 8	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001356	Homeobox domain	SMART	SM00389	HOX_1	coord: 20..87 e-value: 2.1E-6 score: 37.3
IPR001356	Homeobox domain	PFAM	PF00046	Homeodomain	coord: 22..82 e-value: 5.3E-13 score: 48.6
IPR001356	Homeobox domain	PROSITE	PS50071	HOMEOBOX_2	coord: 18..83 score: 11.353329
None	No IPR available	GENE3D	1.10.10.60		coord: 22..89 e-value: 2.0E-9 score: 38.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	PANTHER	PTHR46998:SF2	WUSCHEL-RELATED HOMEOBOX 11	coord: 2..229
IPR044558	WUSCHEL-related homeobox 11-like	PANTHER	PTHR46998	WUSCHEL-RELATED HOMEOBOX 11	coord: 2..229
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 20..90

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh06G000620	CmoCh06G000620	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G000620.1:exon:8500	CmoCh06G000620.1:exon:8500	exon
CmoCh06G000620.1:exon:8499	CmoCh06G000620.1:exon:8499	exon
CmoCh06G000620.1:exon:8498	CmoCh06G000620.1:exon:8498	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G000620.1:three_prime_utr	CmoCh06G000620.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G000620.1:cds	CmoCh06G000620.1:cds_3	CDS
CmoCh06G000620.1:cds	CmoCh06G000620.1:cds_2	CDS
CmoCh06G000620.1:cds	CmoCh06G000620.1:cds	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G000620.1:five_prime_utr	CmoCh06G000620.1:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh06G000620.1	CmoCh06G000620.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048830	adventitious root development
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016020	membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity