CmoCh06G000340.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G000340.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	E3 ubiquitin-protein ligase
Location	Cmo_Chr06: 230143 .. 233923 (+)
Sequence length	1655
RNA-Seq Expression	CmoCh06G000340.1
Synteny	CmoCh06G000340.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCACCGCCACCAGAAAGCAAAAGCCATCGCTGTAGCTCACCAGTTGCCACCCGCCTCAGCTCCCACATTCTCTTTCTCTCTCTACACGACTACTTCACCAGCACCCATTCTCTCTCTCTCTCTCTCTCCCGAATTCTCTCTCAACTGGAGGCGGAGGTCATAATGGAAGAAGAGCGAGCACTCAGACGCAGCGCCAATGGCGGTTCTTCTGTTCTTCGCTACCCCACTGTCAGCACCACTTTTACAATCCCTTTAACTCGCTACACTACCCGTTTGATTACCTCCGACCGCCACCGCGTCCTTTTGGCTGATTGCGCCGACCCTCGACCGGACGCTGAAGAAGATGATGATGACGAAGACGGCTCCAGCGGATTCAATCACCGCTCCTTCTCCTACTCTATGCCCATTTTGGTTCTCGACGTTCTCTGGAATTTGGCCTTTGTTCTTGTCTCGATTGTTGTCCTCTTGTCCACGTTTCGTGAGCGCCCTTCCACCCCTTTGCGCCTTTGGATTTCTGGGTATGCCTTCCAATGTCTTCTGCACATTGGGTTTGTCTTCTTTGAGTACCAGAAGAGTATCCTGCACCATGGCTTTGAGGACCCTGCGGCTCATCGCAGGTAGGGAAAACAGTCTATTATGATTTCATTTCAGTGTTAGGGGAGGTTTTGTGCTATTTGTTGGCTGTGGCTGCTTACATTGTTCACCTTTTTCTAATCCCCTGAATTTTGAGCTTTAAATTTGAAGATGGGAGCCACTAATTTTGCTTGTATGGTTTTTAATGGAAACAAACCCCTTTTTGTTTAATGGAAGAAACAGTGAACTGATGTGATGAGGGGATGGATAATTGAGCATGCATGTTCTAAGAAATAGAGTAAAAGGGGAAAATGTAAATTCTTTATTCGGTGTTTATTTTCTTGATTTCATGTTTCATTCAACCTGTAATTAACTTCGTATCATCTTCTCAAATCTAGTCTTCAACTTACTTGATGAACACATAAAAATATACAGATCTATAAGCTGTACCAGCAAGCTTTGGACTAATTTGTTTCATCTTTGTCCTTCTAGCATAATGAAAAGGTTGGAGTCAATGAATACAATGACATCGTCGGTCTGGTGGGTCTTCGGATTCTATTGGATTGTCATGGGTGGCCACGCACTTCTCCAAGATTCTCCCCGGCTTTATTGGTAAGGACTTTGCCTTTTGACATGTTTTCTGATGGAGAAATGGTGTCACTGGCAAATTTCATCTTCTTTGAAAGTTGTTTCAACTGCTATCTTTTGGTTGGTTTTGCCTTTGAATTAACTGAATGTGTTCACACTGTTCAATCTGGACTTTACTTTTTTCTTTTTAGCAAACTTTCAACAATGTCCTACGGAAACTGGTAGTTTAAGTCATGGCTTTTCTAAATTAGGTTTCTAATTGCATATCAAACTAAGCTGATGACAGTTCGATCTCAAACAATTATACAAATGGCTATGCAAAAATTAAGGTATATCTTTAATATTCTGGTTCCAATCTCGATCATTCGGTTTTTTGTGGGTCAGTGGGTGGGTTCTAGATCATTTTATAAGAGATATCTTACAAGACCGGTGTCACTTCGAAGAACGTTCTTGTTTTGCTACAAAAAGAACAGTGAAAAGGTACCAATGGGGTCCCTTTAGAAGTTGATAATGTTTCCAATACAATAATTGAACCTAAATCCTGTAAGGTTAATGTTGAGTTAGTTGATACAAGAAAATTGTGTATATATATATATATATATATATATATATATAAACCCTAAATGACATCAATACGAATGTTCCGTAACTAATAACCAGTGGATAGCGAGAACAAGGAAAACTAAGTAAATGCATTAAATTTTGTTACATCTGCTTTCTTGATCCAATCTGATACTTTGTCAACAAATGTATTTGAATTTCTTTCATATTTTGACATTTTTAGCTTTAATTGTGTTCACCTAAAGAAATCTTAGCTTGGATTTATTGTTGTTCGGATCATTTAGCCTCATTTGGAGCTTTGATGCTGAATATTTCTTGGGTCAATTGCAGGTTAACCGTGGTCTTTCTAGCATTTGACTTGTTCTTTATTCTCTTTTGTGTTGGTATGGCATTTGTTGTTTGCTTCTCTCTTTGTTGCTGCATTCCAATTGTAGCATTTGCATATGCCATGACTACCAGAGAAGGCGCCTCAGATGAGGATATCAGGACTCTTCCCAAGTATACATTTCGTCAAGCTCCGGTATTTGGGACATTTAACAAAGAACAAAAACCTGTCAGAGCAAGATTGGAGTTGGATAATGATCACCACATCAAAGAACTTGTTCTTCATCCAGAGGATTCCGTCAGCTACTTATCTTTTATTTTATTTCAAATCATTAATATTCATATTCTATCTGGTGGATTGTTTATGATTCTATTGCATCATTATTATCTCCTGCGAAAAGTCCCGGACATTGCACGATTCAGATCTGCATGTGCATTACATATTATGTGCATGCAGTAGTTGATGATCATTCTAAAATTTGTGCGTATTTTGATTCTGTTCTCAGCTAGAATGAAGAGTATGTATTCCTTCTTGAACCATGAAAGATCCATGGAACTTAAAAAAAGGCCAATCTGGGTTCAATAATTGGGAATCTTGGTTATAATAACTCAATTTCTTGACTGCCTGCATAGACTAGCCGATATTGTTCTCTTTGAGCTTTTCCTTTGGGTGTCCCCCCTCAAGGTCTTTAAACCACGTCTGCTAGAGAGAGGTTTCCACACCCTTATAAAGAATGCTTCGTTCTCCTCTCCAACTGATATGGGATCTGGCAATCCACCTCCTTTAGGGCCCAACATCCTCGAACCCTTATAAAAAATACTTCGTTCTCCTCTCGAACCAACGTGGGATGTCAAACTTTTCTTGCTTACAGTGATGAGTAAAAATGTATATCAGTATGGTTCTCTGTGTGCGCAATAGTTAGTGATTCTATGACAGGATGTACTTTCCTCATGGGGTGCAAATTTTTGTTTCGTTTCTCTCACTGGAATGTTCATCCTATCATTGCTTTTGAATCATGGTAGTCTTTTTCTTGTTGCATTTATGCTGTGTTTAGTTGAGAGTTTTCCCTAATTTGAAGCTGAGTATTCAAATATTTACTTTTGTGTAGGAATGTTGCATTTGCCTTTCACAATATGAAGACGGGACGGAGCTCTATACTCTTCCCTGCAACCACCATTTCCATTGTGGGTGCATTGGCAAATGGCTTCGGATAAAGGCAACCTGCCCGCTCTGCAAGTCTAATATCCATTGGGGCGATACATTGGTTTAACCATCGGAACGAGCAACAAATCCAGCTGAGAATTTGAAAGTTAGGATTTTCAATTTCAGGTCGATGCTTGTTGATCTCTGTCAACTAATGCTTTTAGGAACAGGGAGGGTGGAGAGTAGGAATTTAGCTGATTCCAACCTTAGGGAGATGTTTAGTTTCCTTAAACCCCATCTGTGGACACAATTTGATCTGAAACTTTTTACTTTATTTGTATGTAAATTGATAGGAAAAGGTCCTTGTGCCTCTAATTTAATCTGCTATATGTGAATATTTGCTTCTTCTGTGTCAGTTTACTGGCTACTCTGTTTTCAAGCCCTTCGTCATAATTGAAGAGGGATAGGAAAGAGGGAAAACATAGCAGTGTGGAGAAAAGTAACTGTTTAAACCCAATGGACTTCCATAATAGAAAGGGATTTGTTTCAGAAATGCTATTGTTTTAAATGTTACCAACCTTTGCCCTTCC

mRNA sequence

GTCACCGCCACCAGAAAGCAAAAGCCATCGCTGTAGCTCACCAGTTGCCACCCGCCTCAGCTCCCACATTCTCTTTCTCTCTCTACACGACTACTTCACCAGCACCCATTCTCTCTCTCTCTCTCTCTCCCGAATTCTCTCTCAACTGGAGGCGGAGGTCATAATGGAAGAAGAGCGAGCACTCAGACGCAGCGCCAATGGCGGTTCTTCTGTTCTTCGCTACCCCACTGTCAGCACCACTTTTACAATCCCTTTAACTCGCTACACTACCCGTTTGATTACCTCCGACCGCCACCGCGTCCTTTTGGCTGATTGCGCCGACCCTCGACCGGACGCTGAAGAAGATGATGATGACGAAGACGGCTCCAGCGGATTCAATCACCGCTCCTTCTCCTACTCTATGCCCATTTTGGTTCTCGACGTTCTCTGGAATTTGGCCTTTGTTCTTGTCTCGATTGTTGTCCTCTTGTCCACGTTTCGTGAGCGCCCTTCCACCCCTTTGCGCCTTTGGATTTCTGGGTATGCCTTCCAATGTCTTCTGCACATTGGGTTTGTCTTCTTTGAGTACCAGAAGAGTATCCTGCACCATGGCTTTGAGGACCCTGCGGCTCATCGCAGCATAATGAAAAGGTTGGAGTCAATGAATACAATGACATCGTCGGTCTGGTGGGTCTTCGGATTCTATTGGATTGTCATGGGTGGCCACGCACTTCTCCAAGATTCTCCCCGGCTTTATTGGTTAACCGTGGTCTTTCTAGCATTTGACTTGTTCTTTATTCTCTTTTGTGTTGGTATGGCATTTGTTGTTTGCTTCTCTCTTTGTTGCTGCATTCCAATTGTAGCATTTGCATATGCCATGACTACCAGAGAAGGCGCCTCAGATGAGGATATCAGGACTCTTCCCAAGTATACATTTCGTCAAGCTCCGGTATTTGGGACATTTAACAAAGAACAAAAACCTGTCAGAGCAAGATTGGAGTTGGATAATGATCACCACATCAAAGAACTTGTTCTTCATCCAGAGGATTCCGAATGTTGCATTTGCCTTTCACAATATGAAGACGGGACGGAGCTCTATACTCTTCCCTGCAACCACCATTTCCATTGTGGGTGCATTGGCAAATGGCTTCGGATAAAGGCAACCTGCCCGCTCTGCAAGTCTAATATCCATTGGGGCGATACATTGGTTTAACCATCGGAACGAGCAACAAATCCAGCTGAGAATTTGAAAGTTAGGATTTTCAATTTCAGGTCGATGCTTGTTGATCTCTGTCAACTAATGCTTTTAGGAACAGGGAGGGTGGAGAGTAGGAATTTAGCTGATTCCAACCTTAGGGAGATGTTTAGTTTCCTTAAACCCCATCTGTGGACACAATTTGATCTGAAACTTTTTACTTTATTTGTATGTAAATTGATAGGAAAAGGTCCTTGTGCCTCTAATTTAATCTGCTATATGTGAATATTTGCTTCTTCTGTGTCAGTTTACTGGCTACTCTGTTTTCAAGCCCTTCGTCATAATTGAAGAGGGATAGGAAAGAGGGAAAACATAGCAGTGTGGAGAAAAGTAACTGTTTAAACCCAATGGACTTCCATAATAGAAAGGGATTTGTTTCAGAAATGCTATTGTTTTAAATGTTACCAACCTTTGCCCTTCC

Coding sequence (CDS)

ATGGAAGAAGAGCGAGCACTCAGACGCAGCGCCAATGGCGGTTCTTCTGTTCTTCGCTACCCCACTGTCAGCACCACTTTTACAATCCCTTTAACTCGCTACACTACCCGTTTGATTACCTCCGACCGCCACCGCGTCCTTTTGGCTGATTGCGCCGACCCTCGACCGGACGCTGAAGAAGATGATGATGACGAAGACGGCTCCAGCGGATTCAATCACCGCTCCTTCTCCTACTCTATGCCCATTTTGGTTCTCGACGTTCTCTGGAATTTGGCCTTTGTTCTTGTCTCGATTGTTGTCCTCTTGTCCACGTTTCGTGAGCGCCCTTCCACCCCTTTGCGCCTTTGGATTTCTGGGTATGCCTTCCAATGTCTTCTGCACATTGGGTTTGTCTTCTTTGAGTACCAGAAGAGTATCCTGCACCATGGCTTTGAGGACCCTGCGGCTCATCGCAGCATAATGAAAAGGTTGGAGTCAATGAATACAATGACATCGTCGGTCTGGTGGGTCTTCGGATTCTATTGGATTGTCATGGGTGGCCACGCACTTCTCCAAGATTCTCCCCGGCTTTATTGGTTAACCGTGGTCTTTCTAGCATTTGACTTGTTCTTTATTCTCTTTTGTGTTGGTATGGCATTTGTTGTTTGCTTCTCTCTTTGTTGCTGCATTCCAATTGTAGCATTTGCATATGCCATGACTACCAGAGAAGGCGCCTCAGATGAGGATATCAGGACTCTTCCCAAGTATACATTTCGTCAAGCTCCGGTATTTGGGACATTTAACAAAGAACAAAAACCTGTCAGAGCAAGATTGGAGTTGGATAATGATCACCACATCAAAGAACTTGTTCTTCATCCAGAGGATTCCGAATGTTGCATTTGCCTTTCACAATATGAAGACGGGACGGAGCTCTATACTCTTCCCTGCAACCACCATTTCCATTGTGGGTGCATTGGCAAATGGCTTCGGATAAAGGCAACCTGCCCGCTCTGCAAGTCTAATATCCATTGGGGCGATACATTGGTTTAA

Protein sequence

MEEERALRRSANGGSSVLRYPTVSTTFTIPLTRYTTRLITSDRHRVLLADCADPRPDAEEDDDDEDGSSGFNHRSFSYSMPILVLDVLWNLAFVLVSIVVLLSTFRERPSTPLRLWISGYAFQCLLHIGFVFFEYQKSILHHGFEDPAAHRSIMKRLESMNTMTSSVWWVFGFYWIVMGGHALLQDSPRLYWLTVVFLAFDLFFILFCVGMAFVVCFSLCCCIPIVAFAYAMTTREGASDEDIRTLPKYTFRQAPVFGTFNKEQKPVRARLELDNDHHIKELVLHPEDSECCICLSQYEDGTELYTLPCNHHFHCGCIGKWLRIKATCPLCKSNIHWGDTLV

Homology

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BLAST of CmoCh06G000340.1 vs. ExPASy Swiss-Prot
Match: Q93Z92 (E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana OX=3702 GN=At4g11680 PE=2 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 2.4e-67
Identity = 131/286 (45.80%), Postives = 173/286 (60.49%), Query Frame = 0


Query: 76  FSYSMPILVLDVLWNLAFVLVSIVVLLSTFRERPSTPLRLWISGYAFQCLLHIGFVFFEY 135
           ++YS P++ LD+LWNLAFV + + VL+ +  E+P+ PLR+W+ GY  QC LH+  V  EY
Sbjct: 103 WAYSKPVVFLDILWNLAFVAIGVAVLILSRDEKPNMPLRVWVVGYGIQCWLHMACVCVEY 162

Query: 136 ----------------------QKSILHHGFEDPAAHRSIMKRLESMNTMTSSVWWVFGF 195
                                 Q+ +     ED     +  K LES NTM S +WW+ GF
Sbjct: 163 RRRRRRRHPEDGGGSGLTNSSSQQYVSLAQLEDRGETSNPAKHLESANTMFSFIWWIIGF 222

Query: 196 YWIVMGGHALLQDSPRLYWLTVVFLAFDLFFILFCVGMAFVVCFSLCCCIP-IVAFAYAM 255
           YW+  GG  L  DSP+LYWL ++FL FD+FF++FCV +A V+  ++CCC+P I+A  YA+
Sbjct: 223 YWVSAGGQTLSSDSPQLYWLCIIFLGFDVFFVVFCVALACVIGLAVCCCLPCIIAILYAV 282

Query: 256 TTREGASDEDIRTLPKYTFRQAPVFGTFNKEQKPVRAR---LELDNDHHIKELVLHPEDS 315
             +EGAS  DI  +PK+ F +     T N E+   +AR    E   D  I E  L PED+
Sbjct: 283 ADQEGASKNDIDQMPKFRFTK-----TGNVEKLSGKARGIMTECGTDSPI-ERSLSPEDA 342

Query: 316 ECCICLSQYEDGTELYTLPCNHHFHCGCIGKWLRIKATCPLCKSNI 336
           ECCICL +YEDG EL  LPCNHHFHC CI KWL I + CPLCK NI
Sbjct: 343 ECCICLCEYEDGVELRELPCNHHFHCTCIDKWLHINSRCPLCKFNI 382

[Close]

BLAST of CmoCh06G000340.1 vs. ExPASy Swiss-Prot
Match: Q9LN71 (E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana OX=3702 GN=At1g12760 PE=1 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 2.7e-66
Identity = 134/308 (43.51%), Postives = 178/308 (57.79%), Query Frame = 0


Query: 76  FSYSMPILVLDVLWNLAFVLVSIVVLLSTFRERPSTPLRLWISGYAFQCLLHIGFVFFEY 135
           ++YS P++VLD++WNLAFV V+  +L+ + +E P  PLR+W+ GYA QC+LH+  V  EY
Sbjct: 94  WAYSKPVVVLDIVWNLAFVSVATAILVMSRKEHPIMPLRVWLLGYALQCVLHMVCVCVEY 153

Query: 136 QK-----------------------------------SILHHGFED------PAAHRSIM 195
           ++                                   S  + G +D           S+ 
Sbjct: 154 RRRNRRRTNRTTTTTPPRSRSSSSSSSSSSLEEEALGSRRNSGVQDLSLGHLDTESSSVA 213

Query: 196 KRLESMNTMTSSVWWVFGFYWIVMGGHALLQDSPRLYWLTVVFLAFDLFFILFCVGMAFV 255
           K LES NTM S +WW+ GFYW+  GG  L Q+SPR+YWL++VFL FD+FF++FCV +A V
Sbjct: 214 KHLESANTMFSFIWWIIGFYWVSAGGQELAQESPRIYWLSIVFLGFDVFFVVFCVALACV 273

Query: 256 VCFSLCCCIP-IVAFAYAMTTREGASDEDIRTLPKYTFRQAPVFGTFNKEQKPVR----- 315
           +  ++CCC+P I+A  YA+  +EGAS EDI  L K+ FR+    G  NK           
Sbjct: 274 IGIAVCCCLPCIIAVLYAVADQEGASKEDIEQLTKFKFRK---LGDANKHTNDEAQGTTE 333

Query: 316 -ARLELDNDHHIKELVLHPEDSECCICLSQYEDGTELYTLPCNHHFHCGCIGKWLRIKAT 336
               E   D  I+  +L  ED+ECCICLS YEDGTEL  LPC HHFHC C+ KWL I AT
Sbjct: 334 GIMTECGTDSPIEHTLLQ-EDAECCICLSAYEDGTELRELPCGHHFHCSCVDKWLYINAT 393

[Close]

BLAST of CmoCh06G000340.1 vs. ExPASy Swiss-Prot
Match: Q8GUU2 (E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana OX=3702 GN=RIE1 PE=2 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 2.5e-64
Identity = 126/292 (43.15%), Postives = 175/292 (59.93%), Query Frame = 0


Query: 76  FSYSMPILVLDVLWNLAFVLVSIVVLLSTFRERPSTPLRLWISGYAFQCLLHIGFVFFEY 135
           + YS P++  D+LWN A VL S V+L+ T  ERP+ P+R+WI  Y  QCL H+  V+ EY
Sbjct: 71  WGYSKPVVAADILWNAALVLASAVMLVGTVEERPNEPIRVWICVYGLQCLFHVVLVWSEY 130

Query: 136 QK-----------SILHHGF----------EDPAAHRSIMKRLESMNTMTSSVWWVFGFY 195
            +           S  H  +          +D +   S +KR ES+NT+ S +WW+ GFY
Sbjct: 131 WRRNSTRRARDLESYDHEDYNIEYDYEQDSDDNSTTYSFVKRCESINTVISFIWWIIGFY 190

Query: 196 WIVMGGHALLQDSPRLYWLTVVFLAFDLFFILFCVGMAFVVCFSLCCCIP-IVAFAYAMT 255
           W+V GG  LL ++P LYWL+V+FLA D+FF +FCV +A +V  +LCCC+P I+A  YA+ 
Sbjct: 191 WVVEGGDKLLGEAPNLYWLSVIFLAIDVFFAVFCVVLACLVGIALCCCLPCIIALLYAVA 250

Query: 256 TREGASDEDIRTLPKYTFRQAPVFGTFNKEQKPV-----RARLELDNDHHIKELVLHPED 315
             EG S+ ++  LP Y F+       F+  +K +        + ++      E  L  ED
Sbjct: 251 GTEGVSEAELGVLPLYKFK------AFHSNEKNITGPGKMVPIPINGLCLATERTLLAED 310

Query: 316 SECCICLSQYEDGTELYTLPCNHHFHCGCIGKWLRIKATCPLCKSNIHWGDT 341
           ++CCICLS YEDG EL+ LPCNHHFH  CI KWL+++ATCPLCK NI  G T
Sbjct: 311 ADCCICLSSYEDGAELHALPCNHHFHSTCIVKWLKMRATCPLCKYNILKGTT 356

[Close]

BLAST of CmoCh06G000340.1 vs. ExPASy Swiss-Prot
Match: Q8LDB8 (E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana OX=3702 GN=At1g63170 PE=2 SV=2)

HSP 1 Score: 246.9 bits (629), Expect = 3.3e-64
Identity = 132/303 (43.56%), Postives = 176/303 (58.09%), Query Frame = 0


Query: 76  FSYSMPILVLDVLWNLAFVLVSIVVLLSTFRERPSTPLRLWISGYAFQCLLHIGFVFFEY 135
           ++YS P++VLD +WNLAFV+V+  VL+ +  E P+ PLR+WI GY  QC++H+  V  EY
Sbjct: 68  WAYSKPVVVLDFVWNLAFVVVATAVLVLSSDENPNMPLRVWIIGYGLQCMMHMVCVCVEY 127

Query: 136 QK-----------------SILHHGFEDPAA--------------------HRSIMKRLE 195
           ++                 S      ++                       + S  K LE
Sbjct: 128 RRRNSRRRRDLSPRSSSSSSSSSSSMDEEEGLGLSRNSDERYLELGQLENENNSFAKHLE 187

Query: 196 SMNTMTSSVWWVFGFYWIVMGGHALLQDSPRLYWLTVVFLAFDLFFILFCVGMAFVVCFS 255
           S NTM S +WWV GFYW+  GG  L Q SP+LYWL +VFL FD+FF++FCV +A V+  +
Sbjct: 188 SANTMISFIWWVIGFYWVSSGGQELAQGSPQLYWLCIVFLGFDVFFVVFCVALACVIGIA 247

Query: 256 LCCCIP-IVAFAYAMTTREGASDEDIRTLPKYTFRQA--PVFGTFNKEQ---KPVRARLE 315
           +CCC+P I+A  YA+  +EGAS EDI  L K+ FR+    +  T ++EQ          E
Sbjct: 248 VCCCLPCIIAVLYAVAEQEGASKEDIDQLTKFKFRKVGDTMKHTVDEEQGQGDSGGVMTE 307

Query: 316 LDNDHHIKELVLHPEDSECCICLSQYEDGTELYTLPCNHHFHCGCIGKWLRIKATCPLCK 336
              D  ++  + H ED+ECCICLS YED TEL  LPC HHFHCGC+ KWL I ATCPLCK
Sbjct: 308 CGTDSPVEHALPH-EDAECCICLSAYEDETELRELPCGHHFHCGCVDKWLYINATCPLCK 367

[Close]

BLAST of CmoCh06G000340.1 vs. ExPASy Swiss-Prot
Match: Q7XTV7 (Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza sativa subsp. japonica OX=39947 GN=HIP1 PE=1 SV=2)

HSP 1 Score: 70.5 bits (171), Expect = 4.2e-11
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 287 EDSECCICLSQYEDGTELYTLPCNHHFHCGCIGKWLRIKATCPLCKS 334
           E+  CCIC  +Y DG +L TL C H FH GC+ +WL +K TCP+CK+
Sbjct: 616 EEEPCCICQEEYVDGDDLGTLDCGHDFHVGCVRQWLVVKNTCPICKN 662

[Close]

BLAST of CmoCh06G000340.1 vs. ExPASy TrEMBL
Match: A0A6J1FCD6 (E3 ubiquitin-protein ligase At4g11680-like OS=Cucurbita moschata OX=3662 GN=LOC111444117 PE=4 SV=1)

HSP 1 Score: 709.5 bits (1830), Expect = 6.6e-201
Identity = 342/342 (100.00%), Postives = 342/342 (100.00%), Query Frame = 0


Query: 1   MEEERALRRSANGGSSVLRYPTVSTTFTIPLTRYTTRLITSDRHRVLLADCADPRPDAEE 60
           MEEERALRRSANGGSSVLRYPTVSTTFTIPLTRYTTRLITSDRHRVLLADCADPRPDAEE
Sbjct: 1   MEEERALRRSANGGSSVLRYPTVSTTFTIPLTRYTTRLITSDRHRVLLADCADPRPDAEE 60

Query: 61  DDDDEDGSSGFNHRSFSYSMPILVLDVLWNLAFVLVSIVVLLSTFRERPSTPLRLWISGY 120
           DDDDEDGSSGFNHRSFSYSMPILVLDVLWNLAFVLVSIVVLLSTFRERPSTPLRLWISGY
Sbjct: 61  DDDDEDGSSGFNHRSFSYSMPILVLDVLWNLAFVLVSIVVLLSTFRERPSTPLRLWISGY 120

Query: 121 AFQCLLHIGFVFFEYQKSILHHGFEDPAAHRSIMKRLESMNTMTSSVWWVFGFYWIVMGG 180
           AFQCLLHIGFVFFEYQKSILHHGFEDPAAHRSIMKRLESMNTMTSSVWWVFGFYWIVMGG
Sbjct: 121 AFQCLLHIGFVFFEYQKSILHHGFEDPAAHRSIMKRLESMNTMTSSVWWVFGFYWIVMGG 180

Query: 181 HALLQDSPRLYWLTVVFLAFDLFFILFCVGMAFVVCFSLCCCIPIVAFAYAMTTREGASD 240
           HALLQDSPRLYWLTVVFLAFDLFFILFCVGMAFVVCFSLCCCIPIVAFAYAMTTREGASD
Sbjct: 181 HALLQDSPRLYWLTVVFLAFDLFFILFCVGMAFVVCFSLCCCIPIVAFAYAMTTREGASD 240

Query: 241 EDIRTLPKYTFRQAPVFGTFNKEQKPVRARLELDNDHHIKELVLHPEDSECCICLSQYED 300
           EDIRTLPKYTFRQAPVFGTFNKEQKPVRARLELDNDHHIKELVLHPEDSECCICLSQYED
Sbjct: 241 EDIRTLPKYTFRQAPVFGTFNKEQKPVRARLELDNDHHIKELVLHPEDSECCICLSQYED 300

Query: 301 GTELYTLPCNHHFHCGCIGKWLRIKATCPLCKSNIHWGDTLV 343
           GTELYTLPCNHHFHCGCIGKWLRIKATCPLCKSNIHWGDTLV
Sbjct: 301 GTELYTLPCNHHFHCGCIGKWLRIKATCPLCKSNIHWGDTLV 342

[Close]

BLAST of CmoCh06G000340.1 vs. ExPASy TrEMBL
Match: A0A6J1I3D4 (E3 ubiquitin-protein ligase At4g11680-like OS=Cucurbita maxima OX=3661 GN=LOC111470167 PE=4 SV=1)

HSP 1 Score: 698.0 bits (1800), Expect = 2.0e-197
Identity = 337/342 (98.54%), Postives = 339/342 (99.12%), Query Frame = 0


Query: 1   MEEERALRRSANGGSSVLRYPTVSTTFTIPLTRYTTRLITSDRHRVLLADCADPRPDAEE 60
           MEEERALRRSANGGSSVLR PTVSTTFTIPLTRYTTRLITSDRHRVLLADCADPRPDAEE
Sbjct: 1   MEEERALRRSANGGSSVLRXPTVSTTFTIPLTRYTTRLITSDRHRVLLADCADPRPDAEE 60

Query: 61  DDDDEDGSSGFNHRSFSYSMPILVLDVLWNLAFVLVSIVVLLSTFRERPSTPLRLWISGY 120
           DDDDEDGS+GFNHRSFSYSMPILVLDVLWNLAFVLVSIVVLLSTFRERPSTPLRLWISGY
Sbjct: 61  DDDDEDGSNGFNHRSFSYSMPILVLDVLWNLAFVLVSIVVLLSTFRERPSTPLRLWISGY 120

Query: 121 AFQCLLHIGFVFFEYQKSILHHGFEDPAAHRSIMKRLESMNTMTSSVWWVFGFYWIVMGG 180
           AFQCLLHIGFVFFEYQ+SILHHGFED AAHRSIMKRLESMNTMTSSVWWVFGFYWIVMGG
Sbjct: 121 AFQCLLHIGFVFFEYQRSILHHGFEDRAAHRSIMKRLESMNTMTSSVWWVFGFYWIVMGG 180

Query: 181 HALLQDSPRLYWLTVVFLAFDLFFILFCVGMAFVVCFSLCCCIPIVAFAYAMTTREGASD 240
           HALLQDSPRLYWLTVVFLAFDLFFILFCVGMAFVVCFSLCCCIPIVAFAYAMTTREGASD
Sbjct: 181 HALLQDSPRLYWLTVVFLAFDLFFILFCVGMAFVVCFSLCCCIPIVAFAYAMTTREGASD 240

Query: 241 EDIRTLPKYTFRQAPVFGTFNKEQKPVRARLELDNDHHIKELVLHPEDSECCICLSQYED 300
           EDIRTLPKYTFRQAPVFGTFNKEQKPV ARLELDNDHHIKELVLHPEDSECCICLSQYED
Sbjct: 241 EDIRTLPKYTFRQAPVFGTFNKEQKPVGARLELDNDHHIKELVLHPEDSECCICLSQYED 300

Query: 301 GTELYTLPCNHHFHCGCIGKWLRIKATCPLCKSNIHWGDTLV 343
           GTELYTLPCNHHFHCGCIGKWLRIKATCPLCKSNIHWGDTLV
Sbjct: 301 GTELYTLPCNHHFHCGCIGKWLRIKATCPLCKSNIHWGDTLV 342

[Close]

BLAST of CmoCh06G000340.1 vs. ExPASy TrEMBL
Match: A0A6J1J3G3 (E3 ubiquitin-protein ligase At4g11680-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482323 PE=4 SV=1)

HSP 1 Score: 564.3 bits (1453), Expect = 3.5e-157
Identity = 287/352 (81.53%), Postives = 302/352 (85.80%), Query Frame = 0


Query: 1   MEEERALRRSANGGS---SVLRYPTVSTTFTIPLTRYTTRLITSDRHRVLLADCADPRPD 60
           MEEERALRR+ANGG+   SVLRYPTVSTTFTIPLTRYTTRLITS RHR LLADCAD R D
Sbjct: 1   MEEERALRRTANGGTLNDSVLRYPTVSTTFTIPLTRYTTRLITSGRHRPLLADCADSRSD 60

Query: 61  AEEDDDDEDGSSGFNHRSF-----SYSMPILVLDVLWNLAFVLVSIVVLLSTFRERPSTP 120
            E+ DD  D    FN RS       YSMPIL+LDV+WNLAFV VSIVVLLSTFRERPSTP
Sbjct: 61  TEDHDDAND----FNRRSIVRENCFYSMPILILDVVWNLAFVFVSIVVLLSTFRERPSTP 120

Query: 121 LRLWISGYAFQCLLHIGFVFFEYQKSILHHGFEDPAAHRSIMKRLESMNTMTSSVWWVFG 180
           LRLWISGY  QCLLH+GFVFFEYQ+S+  HGFED A HRSIMKRLESMNTMTSSVWWVFG
Sbjct: 121 LRLWISGYGLQCLLHVGFVFFEYQRSMALHGFEDRAYHRSIMKRLESMNTMTSSVWWVFG 180

Query: 181 FYWIVMGGHALLQDSPRLYWLTVVFLAFDLFFILFCVGMAFVVCFSLCCCIPIVAFAYAM 240
           FYWIVMGGHALLQDSPRLYWLTVVFLAFDLFFILFC+GMA VV FSLCCCIPI+AFAYAM
Sbjct: 181 FYWIVMGGHALLQDSPRLYWLTVVFLAFDLFFILFCIGMACVVFFSLCCCIPIIAFAYAM 240

Query: 241 TTREGASDEDIRTLPKYTFRQAPVFGTF--NKEQKPVRARLELDNDHHIKELVLHPEDSE 300
           T REGAS+E IR LPKYTFRQA   G F   KE++P+ A  ELDNDH IKEL LHPEDSE
Sbjct: 241 TAREGASEEVIRALPKYTFRQA-ALGAFIHGKEREPIGATTELDNDHLIKELALHPEDSE 300

Query: 301 CCICLSQYEDGTELYTLPCNHHFHCGCIGKWLRIKATCPLCKSNIHWGDTLV 343
           CCICLSQYEDGTELYTLPCNHHFHCGCIGKWLRI ATCPLCKS+I  GDTLV
Sbjct: 301 CCICLSQYEDGTELYTLPCNHHFHCGCIGKWLRINATCPLCKSSICRGDTLV 347

[Close]

BLAST of CmoCh06G000340.1 vs. ExPASy TrEMBL
Match: A0A5D3DQ81 (E3 ubiquitin-protein ligase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006360 PE=4 SV=1)

HSP 1 Score: 563.5 bits (1451), Expect = 5.9e-157
Identity = 278/344 (80.81%), Postives = 300/344 (87.21%), Query Frame = 0


Query: 1   MEEERALRRSANGGSSVLRYPTVSTTFTIPLTRYTTRLITSDRHRVLLADCADPRPDAEE 60
           MEE+RALR + N   S+LRYPTVSTTFTIPLTRYTTRLI+SDRHR LLADCA+     + 
Sbjct: 1   MEEQRALRPTLN--HSLLRYPTVSTTFTIPLTRYTTRLISSDRHRPLLADCAE-----DH 60

Query: 61  DDDDEDGSSGFNHRSFSYSMPILVLDVLWNLAFVLVSIVVLLSTFRERPSTPLRLWISGY 120
            D D+     F   + SYSMPILVLDV+WNLAFVLVS+VVL STFRERPSTPLRLWISGY
Sbjct: 61  SDSDDFSRRSFIRENCSYSMPILVLDVVWNLAFVLVSVVVLFSTFRERPSTPLRLWISGY 120

Query: 121 AFQCLLHIGFVFFEYQKSILHHGFEDPAAHRSIMKRLESMNTMTSSVWWVFGFYWIVMGG 180
             QCLLH+GFVFFEYQ+S+ HHGFED AAHRSIMKRLESMNTMTSSVWWVFGFYWIVMGG
Sbjct: 121 GLQCLLHVGFVFFEYQRSMAHHGFEDRAAHRSIMKRLESMNTMTSSVWWVFGFYWIVMGG 180

Query: 181 HALLQDSPRLYWLTVVFLAFDLFFILFCVGMAFVVCFSLCCCIPIVAFAYAMTTREGASD 240
            ALLQDSPRLYWLTVVFLAFDLFFILFC+GMA V+ FSLCCCIPIVAFAYAMTTREGAS+
Sbjct: 181 QALLQDSPRLYWLTVVFLAFDLFFILFCIGMACVIFFSLCCCIPIVAFAYAMTTREGASE 240

Query: 241 EDIRTLPKYTFRQAPVFGTFN--KEQKPVRARLELDNDHHIKELVLHPEDSECCICLSQY 300
           EDIRTLPKYTFRQA V GTFN  KE++P+ + +ELDN H IKEL LHPEDSECCICLS+Y
Sbjct: 241 EDIRTLPKYTFRQAAVLGTFNLGKEREPISSTVELDNGHRIKELALHPEDSECCICLSRY 300

Query: 301 EDGTELYTLPCNHHFHCGCIGKWLRIKATCPLCKSNIHWGDTLV 343
           EDGTELYTLPCNHHFHCGCI KWLRI ATCPLCKSNI  GDTLV
Sbjct: 301 EDGTELYTLPCNHHFHCGCIAKWLRINATCPLCKSNIRRGDTLV 337

[Close]

BLAST of CmoCh06G000340.1 vs. ExPASy TrEMBL
Match: A0A1S3B880 (E3 ubiquitin-protein ligase At4g11680-like OS=Cucumis melo OX=3656 GN=LOC103486858 PE=4 SV=1)

HSP 1 Score: 563.5 bits (1451), Expect = 5.9e-157
Identity = 278/344 (80.81%), Postives = 300/344 (87.21%), Query Frame = 0


Query: 1   MEEERALRRSANGGSSVLRYPTVSTTFTIPLTRYTTRLITSDRHRVLLADCADPRPDAEE 60
           MEE+RALR + N   S+LRYPTVSTTFTIPLTRYTTRLI+SDRHR LLADCA+     + 
Sbjct: 1   MEEQRALRPTLN--HSLLRYPTVSTTFTIPLTRYTTRLISSDRHRPLLADCAE-----DH 60

Query: 61  DDDDEDGSSGFNHRSFSYSMPILVLDVLWNLAFVLVSIVVLLSTFRERPSTPLRLWISGY 120
            D D+     F   + SYSMPILVLDV+WNLAFVLVS+VVL STFRERPSTPLRLWISGY
Sbjct: 61  SDSDDFSRRSFIRENCSYSMPILVLDVVWNLAFVLVSVVVLFSTFRERPSTPLRLWISGY 120

Query: 121 AFQCLLHIGFVFFEYQKSILHHGFEDPAAHRSIMKRLESMNTMTSSVWWVFGFYWIVMGG 180
             QCLLH+GFVFFEYQ+S+ HHGFED AAHRSIMKRLESMNTMTSSVWWVFGFYWIVMGG
Sbjct: 121 GLQCLLHVGFVFFEYQRSMAHHGFEDRAAHRSIMKRLESMNTMTSSVWWVFGFYWIVMGG 180

Query: 181 HALLQDSPRLYWLTVVFLAFDLFFILFCVGMAFVVCFSLCCCIPIVAFAYAMTTREGASD 240
            ALLQDSPRLYWLTVVFLAFDLFFILFC+GMA V+ FSLCCCIPIVAFAYAMTTREGAS+
Sbjct: 181 QALLQDSPRLYWLTVVFLAFDLFFILFCIGMACVIFFSLCCCIPIVAFAYAMTTREGASE 240

Query: 241 EDIRTLPKYTFRQAPVFGTFN--KEQKPVRARLELDNDHHIKELVLHPEDSECCICLSQY 300
           EDIRTLPKYTFRQA V GTFN  KE++P+ + +ELDN H IKEL LHPEDSECCICLS+Y
Sbjct: 241 EDIRTLPKYTFRQAAVLGTFNLGKEREPISSTVELDNGHRIKELALHPEDSECCICLSRY 300

Query: 301 EDGTELYTLPCNHHFHCGCIGKWLRIKATCPLCKSNIHWGDTLV 343
           EDGTELYTLPCNHHFHCGCI KWLRI ATCPLCKSNI  GDTLV
Sbjct: 301 EDGTELYTLPCNHHFHCGCIAKWLRINATCPLCKSNIRRGDTLV 337

[Close]

BLAST of CmoCh06G000340.1 vs. TAIR 10
Match: AT1G68070.1 (Zinc finger, C3HC4 type (RING finger) family protein )

HSP 1 Score: 265.0 bits (676), Expect = 8.3e-71
Identity = 141/290 (48.62%), Postives = 183/290 (63.10%), Query Frame = 0


Query: 76  FSYSMPILVLDVLWNLAFVLVSIVVLLSTFRERPSTPLRLWISGYAFQCLLHIGFVFFEY 135
           + YS P++ LD+LWN AFVLV+IV+LL    E+P+ P+R+WI GYA QCL+H+  V+ E+
Sbjct: 62  WGYSKPVVALDMLWNTAFVLVAIVMLLVFKEEKPNVPIRIWICGYAIQCLVHVVLVWLEF 121

Query: 136 QK-------------SILHHGFEDPAAHRSIM--KRLESMNTMTSSVWWVFGFYWIVMGG 195
           +K                +   ED       +  K  ESMNT+ S VWW+ GFYW+V GG
Sbjct: 122 RKRNARSRPGDLEAAQATNQDSEDEDNDERFLSTKTCESMNTIISFVWWIVGFYWLVSGG 181

Query: 196 HALLQDSPRLYWLTVVFLAFDLFFILFCVGMAFVVCFSLCCCIP-IVAFAYAMTTREGAS 255
             LLQ++  LYWLT VFLAFD+FF +FCV +A ++  +LCCC+P I+A  YA+  +EGAS
Sbjct: 182 DILLQNATHLYWLTFVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIALLYAVAGQEGAS 241

Query: 256 DEDIRTLPKYTFRQAPVFGTFNKEQK---------PVRARLE-LDNDHHIKELVLHPEDS 315
           + D+  LPKY F       T N ++K         PV A  E L N     E VL PED+
Sbjct: 242 EADLSILPKYRFH------TMNNDEKQSDGGGKMIPVDAASENLGN-----ERVLLPEDA 301

Query: 316 ECCICLSQYEDGTELYTLPCNHHFHCGCIGKWLRIKATCPLCKSNIHWGD 340
           +CCICLS YEDG EL +LPCNHHFH  CI KWL++ ATCPLCK NI  G+
Sbjct: 302 DCCICLSSYEDGAELVSLPCNHHFHSTCIVKWLKMNATCPLCKFNILKGN 340

[Close]

BLAST of CmoCh06G000340.1 vs. TAIR 10
Match: AT4G11680.1 (Zinc finger, C3HC4 type (RING finger) family protein )

HSP 1 Score: 257.3 bits (656), Expect = 1.7e-68
Identity = 131/286 (45.80%), Postives = 173/286 (60.49%), Query Frame = 0


Query: 76  FSYSMPILVLDVLWNLAFVLVSIVVLLSTFRERPSTPLRLWISGYAFQCLLHIGFVFFEY 135
           ++YS P++ LD+LWNLAFV + + VL+ +  E+P+ PLR+W+ GY  QC LH+  V  EY
Sbjct: 103 WAYSKPVVFLDILWNLAFVAIGVAVLILSRDEKPNMPLRVWVVGYGIQCWLHMACVCVEY 162

Query: 136 ----------------------QKSILHHGFEDPAAHRSIMKRLESMNTMTSSVWWVFGF 195
                                 Q+ +     ED     +  K LES NTM S +WW+ GF
Sbjct: 163 RRRRRRRHPEDGGGSGLTNSSSQQYVSLAQLEDRGETSNPAKHLESANTMFSFIWWIIGF 222

Query: 196 YWIVMGGHALLQDSPRLYWLTVVFLAFDLFFILFCVGMAFVVCFSLCCCIP-IVAFAYAM 255
           YW+  GG  L  DSP+LYWL ++FL FD+FF++FCV +A V+  ++CCC+P I+A  YA+
Sbjct: 223 YWVSAGGQTLSSDSPQLYWLCIIFLGFDVFFVVFCVALACVIGLAVCCCLPCIIAILYAV 282

Query: 256 TTREGASDEDIRTLPKYTFRQAPVFGTFNKEQKPVRAR---LELDNDHHIKELVLHPEDS 315
             +EGAS  DI  +PK+ F +     T N E+   +AR    E   D  I E  L PED+
Sbjct: 283 ADQEGASKNDIDQMPKFRFTK-----TGNVEKLSGKARGIMTECGTDSPI-ERSLSPEDA 342

Query: 316 ECCICLSQYEDGTELYTLPCNHHFHCGCIGKWLRIKATCPLCKSNI 336
           ECCICL +YEDG EL  LPCNHHFHC CI KWL I + CPLCK NI
Sbjct: 343 ECCICLCEYEDGVELRELPCNHHFHCTCIDKWLHINSRCPLCKFNI 382

[Close]

BLAST of CmoCh06G000340.1 vs. TAIR 10
Match: AT1G12760.1 (Zinc finger, C3HC4 type (RING finger) family protein )

HSP 1 Score: 253.8 bits (647), Expect = 1.9e-67
Identity = 134/308 (43.51%), Postives = 178/308 (57.79%), Query Frame = 0


Query: 76  FSYSMPILVLDVLWNLAFVLVSIVVLLSTFRERPSTPLRLWISGYAFQCLLHIGFVFFEY 135
           ++YS P++VLD++WNLAFV V+  +L+ + +E P  PLR+W+ GYA QC+LH+  V  EY
Sbjct: 94  WAYSKPVVVLDIVWNLAFVSVATAILVMSRKEHPIMPLRVWLLGYALQCVLHMVCVCVEY 153

Query: 136 QK-----------------------------------SILHHGFED------PAAHRSIM 195
           ++                                   S  + G +D           S+ 
Sbjct: 154 RRRNRRRTNRTTTTTPPRSRSSSSSSSSSSLEEEALGSRRNSGVQDLSLGHLDTESSSVA 213

Query: 196 KRLESMNTMTSSVWWVFGFYWIVMGGHALLQDSPRLYWLTVVFLAFDLFFILFCVGMAFV 255
           K LES NTM S +WW+ GFYW+  GG  L Q+SPR+YWL++VFL FD+FF++FCV +A V
Sbjct: 214 KHLESANTMFSFIWWIIGFYWVSAGGQELAQESPRIYWLSIVFLGFDVFFVVFCVALACV 273

Query: 256 VCFSLCCCIP-IVAFAYAMTTREGASDEDIRTLPKYTFRQAPVFGTFNKEQKPVR----- 315
           +  ++CCC+P I+A  YA+  +EGAS EDI  L K+ FR+    G  NK           
Sbjct: 274 IGIAVCCCLPCIIAVLYAVADQEGASKEDIEQLTKFKFRK---LGDANKHTNDEAQGTTE 333

Query: 316 -ARLELDNDHHIKELVLHPEDSECCICLSQYEDGTELYTLPCNHHFHCGCIGKWLRIKAT 336
               E   D  I+  +L  ED+ECCICLS YEDGTEL  LPC HHFHC C+ KWL I AT
Sbjct: 334 GIMTECGTDSPIEHTLLQ-EDAECCICLSAYEDGTELRELPCGHHFHCSCVDKWLYINAT 393

[Close]

BLAST of CmoCh06G000340.1 vs. TAIR 10
Match: AT1G12760.2 (Zinc finger, C3HC4 type (RING finger) family protein )

HSP 1 Score: 253.8 bits (647), Expect = 1.9e-67
Identity = 134/308 (43.51%), Postives = 178/308 (57.79%), Query Frame = 0


Query: 76  FSYSMPILVLDVLWNLAFVLVSIVVLLSTFRERPSTPLRLWISGYAFQCLLHIGFVFFEY 135
           ++YS P++VLD++WNLAFV V+  +L+ + +E P  PLR+W+ GYA QC+LH+  V  EY
Sbjct: 23  WAYSKPVVVLDIVWNLAFVSVATAILVMSRKEHPIMPLRVWLLGYALQCVLHMVCVCVEY 82

Query: 136 QK-----------------------------------SILHHGFED------PAAHRSIM 195
           ++                                   S  + G +D           S+ 
Sbjct: 83  RRRNRRRTNRTTTTTPPRSRSSSSSSSSSSLEEEALGSRRNSGVQDLSLGHLDTESSSVA 142

Query: 196 KRLESMNTMTSSVWWVFGFYWIVMGGHALLQDSPRLYWLTVVFLAFDLFFILFCVGMAFV 255
           K LES NTM S +WW+ GFYW+  GG  L Q+SPR+YWL++VFL FD+FF++FCV +A V
Sbjct: 143 KHLESANTMFSFIWWIIGFYWVSAGGQELAQESPRIYWLSIVFLGFDVFFVVFCVALACV 202

Query: 256 VCFSLCCCIP-IVAFAYAMTTREGASDEDIRTLPKYTFRQAPVFGTFNKEQKPVR----- 315
           +  ++CCC+P I+A  YA+  +EGAS EDI  L K+ FR+    G  NK           
Sbjct: 203 IGIAVCCCLPCIIAVLYAVADQEGASKEDIEQLTKFKFRK---LGDANKHTNDEAQGTTE 262

Query: 316 -ARLELDNDHHIKELVLHPEDSECCICLSQYEDGTELYTLPCNHHFHCGCIGKWLRIKAT 336
               E   D  I+  +L  ED+ECCICLS YEDGTEL  LPC HHFHC C+ KWL I AT
Sbjct: 263 GIMTECGTDSPIEHTLLQ-EDAECCICLSAYEDGTELRELPCGHHFHCSCVDKWLYINAT 322

[Close]

BLAST of CmoCh06G000340.1 vs. TAIR 10
Match: AT2G01735.1 (RING-finger protein for embryogenesis )

HSP 1 Score: 247.3 bits (630), Expect = 1.8e-65
Identity = 126/292 (43.15%), Postives = 175/292 (59.93%), Query Frame = 0


Query: 76  FSYSMPILVLDVLWNLAFVLVSIVVLLSTFRERPSTPLRLWISGYAFQCLLHIGFVFFEY 135
           + YS P++  D+LWN A VL S V+L+ T  ERP+ P+R+WI  Y  QCL H+  V+ EY
Sbjct: 71  WGYSKPVVAADILWNAALVLASAVMLVGTVEERPNEPIRVWICVYGLQCLFHVVLVWSEY 130

Query: 136 QK-----------SILHHGF----------EDPAAHRSIMKRLESMNTMTSSVWWVFGFY 195
            +           S  H  +          +D +   S +KR ES+NT+ S +WW+ GFY
Sbjct: 131 WRRNSTRRARDLESYDHEDYNIEYDYEQDSDDNSTTYSFVKRCESINTVISFIWWIIGFY 190

Query: 196 WIVMGGHALLQDSPRLYWLTVVFLAFDLFFILFCVGMAFVVCFSLCCCIP-IVAFAYAMT 255
           W+V GG  LL ++P LYWL+V+FLA D+FF +FCV +A +V  +LCCC+P I+A  YA+ 
Sbjct: 191 WVVEGGDKLLGEAPNLYWLSVIFLAIDVFFAVFCVVLACLVGIALCCCLPCIIALLYAVA 250

Query: 256 TREGASDEDIRTLPKYTFRQAPVFGTFNKEQKPV-----RARLELDNDHHIKELVLHPED 315
             EG S+ ++  LP Y F+       F+  +K +        + ++      E  L  ED
Sbjct: 251 GTEGVSEAELGVLPLYKFK------AFHSNEKNITGPGKMVPIPINGLCLATERTLLAED 310

Query: 316 SECCICLSQYEDGTELYTLPCNHHFHCGCIGKWLRIKATCPLCKSNIHWGDT 341
           ++CCICLS YEDG EL+ LPCNHHFH  CI KWL+++ATCPLCK NI  G T
Sbjct: 311 ADCCICLSSYEDGAELHALPCNHHFHSTCIVKWLKMRATCPLCKYNILKGTT 356

The following BLAST results are available for this feature:

BLAST of CmoCh06G000340.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93Z92	2.4e-67	45.80	E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana OX=3702 GN=At4g116...	[more]
Q9LN71	2.7e-66	43.51	E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana OX=3702 GN=At1g127...	[more]
Q8GUU2	2.5e-64	43.15	E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana OX=3702 GN=RIE1 PE=2 SV...	[more]
Q8LDB8	3.3e-64	43.56	E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana OX=3702 GN=At1g631...	[more]
Q7XTV7	4.2e-11	53.19	Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza sativa subsp. japonica OX=399...	[more]

BLAST of CmoCh06G000340.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FCD6	6.6e-201	100.00	E3 ubiquitin-protein ligase At4g11680-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1I3D4	2.0e-197	98.54	E3 ubiquitin-protein ligase At4g11680-like OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1J3G3	3.5e-157	81.53	E3 ubiquitin-protein ligase At4g11680-like isoform X1 OS=Cucurbita maxima OX=366...	[more]
A0A5D3DQ81	5.9e-157	80.81	E3 ubiquitin-protein ligase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3B880	5.9e-157	80.81	E3 ubiquitin-protein ligase At4g11680-like OS=Cucumis melo OX=3656 GN=LOC1034868...	[more]

BLAST of CmoCh06G000340.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68070.1	8.3e-71	48.62	Zinc finger, C3HC4 type (RING finger) family protein	[more]
AT4G11680.1	1.7e-68	45.80	Zinc finger, C3HC4 type (RING finger) family protein	[more]
AT1G12760.1	1.9e-67	43.51	Zinc finger, C3HC4 type (RING finger) family protein	[more]
AT1G12760.2	1.9e-67	43.51	Zinc finger, C3HC4 type (RING finger) family protein	[more]
AT2G01735.1	1.8e-65	43.15	RING-finger protein for embryogenesis	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 291..331 e-value: 4.6E-6 score: 36.2
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 290..332 e-value: 2.8E-12 score: 46.8
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 291..332 score: 12.238477
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 269..338 e-value: 9.5E-18 score: 65.2
None	No IPR available	PANTHER	PTHR45977:SF19	RING-FINGER UBIQUITIN LIGASE	coord: 19..342
None	No IPR available	PANTHER	PTHR45977	TARGET OF ERK KINASE MPK-1	coord: 19..342
None	No IPR available	CDD	cd16474	RING-H2_RNF111_like	coord: 290..334 e-value: 2.69706E-18 score: 75.4257
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 282..336

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh06G000340	CmoCh06G000340	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G000340.1:exon:9486	CmoCh06G000340.1:exon:9486	exon
CmoCh06G000340.1:exon:9487	CmoCh06G000340.1:exon:9487	exon
CmoCh06G000340.1:exon:9488	CmoCh06G000340.1:exon:9488	exon
CmoCh06G000340.1:exon:9489	CmoCh06G000340.1:exon:9489	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G000340.1:five_prime_utr	CmoCh06G000340.1:five_prime_utr	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G000340.1:cds	CmoCh06G000340.1:cds	CDS
CmoCh06G000340.1:cds	CmoCh06G000340.1:cds_2	CDS
CmoCh06G000340.1:cds	CmoCh06G000340.1:cds_3	CDS
CmoCh06G000340.1:cds	CmoCh06G000340.1:cds_4	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G000340.1:three_prime_utr	CmoCh06G000340.1:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh06G000340.1	CmoCh06G000340.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane