CmoCh06G000150.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G000150.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	TGACG-sequence-specific DNA-binding protein TGA-2.1-like
Location	Cmo_Chr06: 104664 .. 106061 (-)
Sequence length	1259
RNA-Seq Expression	CmoCh06G000150.1
Synteny	CmoCh06G000150.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCATCCTCTCCCTCTTCCACTTCAGAAAAACTTCTCCCTCTCAACTCTGCTTTACCTTCAATAATCTCCATTACTGCACCTTCCTCACTAACCCTCACTCCAACCCCACCTCTCCCTATCCACTTCCCCAAATAGCTATAGATCTTGTCCACGTCCAAAGGAAGCTTCGCTAACCCCTTCCCTATCCAACTCTGAGACAGGATGAACCTCAACACCCCTCCTCTTCTGGAGTGAATTCCCACCCAAAACCCCCCTCCTTTACTACTACGACTCCTCTTGATGTTGTCCGGGAACCCCGGGAGCTCCCCCACCACCTCGGCTTTGCCCGTCCCCAGCCAGTACTTGAGAATCCTGCACTTGGTGGTCTCCGCGAGTAGAAGGAAATCCCTGTTTTTGCTCAGTGACACTCCGTTCGGAAATGAAGGGTTTCCCAACAGAAGGCTTAGTTGTTTGGATTTTGGATCATATTTCATTAGCCTTCCTGAACTGTCTCCACTTAATATAGCCGACGCAAAGTTCCTGCACAAAAACACACAACATTTAAATATATGGGTCATTAAAGGAATGGATGCATCGCAGCAATCCTTGGCTGAAACTTTGGCCAGTGGCACGCCTGCTACGTCGGGGTCATCTGGTAATGTGGTTAATTATATGGGTCAAATGGCCATGGCAATGGGAAAGCTCGGAACTCTTGATGGCTTCCTACGCCAGGTAATTTGGTTTTAGATTTTATGTCACTCTGTTCCATCTAGTTACAGTTATACCTCGCTCATGCAACAAACAAGTAAAGTTGAAATCTTTGTCCATGTTTTCTCACTTTCATTTTTCCATCTCTTTCTATAACTTGCAGGCCGATAATCTTCGTCAACAAACACTTCAACAAATGCATCGCATATTGACAACCCGTCAATCAGCTCGTGCGCTTCTTGCAATAAACGACTACTTCTCCCGCCTTCGAGCTCTAAGCTCTCTCTGGCTTGCACGGCCACGAGAGTGAAAGGGGCATGGGAGTTCTCTCTAGTTAATCTGTCAAATTTATCAAACAAGTGCCTGAAGTGTGCTACCACACAGAATTGCATTGCTTCATTGGATGAAGCTGCTTCTGTCATAGGAATTGTACAATGGATGAAGATGAGTGATGGTGGTGTAGGGTGAAGTTTGTGATTGATATATACATATATATAGCTTTCACATTTTCAGTTGTTTAGTGTCGGTTGGTGATATTGTATGCTTATTACAATAATCTTTTCAGGTGATGTTTCATAGAACTGAATGGGAAAATAGGTTGTATCTGTAACTTACATTTGTATTACATCAACCTACACCAGAGATCATATTATAATTTATTTTCAAATAATATTCTTTGAGTAAGTAAACCATTTTGAGTTTACTGCAAAA

mRNA sequence

CCATCCTCTCCCTCTTCCACTTCAGAAAAACTTCTCCCTCTCAACTCTGCTTTACCTTCAATAATCTCCATTACTGCACCTTCCTCACTAACCCTCACTCCAACCCCACCTCTCCCTATCCACTTCCCCAAATAGCTATAGATCTTGTCCACGTCCAAAGGAAGCTTCGCTAACCCCTTCCCTATCCAACTCTGAGACAGGATGAACCTCAACACCCCTCCTCTTCTGGAGTGAATTCCCACCCAAAACCCCCCTCCTTTACTACTACGACTCCTCTTGATGTTGTCCGGGAACCCCGGGAGCTCCCCCACCACCTCGGCTTTGCCCGTCCCCAGCCAGTACTTGAGAATCCTGCACTTGGTGGTCTCCGCGAGTAGAAGGAAATCCCTGTTTTTGCTCAGTGACACTCCGTTCGGAAATGAAGGGTTTCCCAACAGAAGGCTTAGTTGTTTGGATTTTGGATCATATTTCATTAGCCTTCCTGAACTGTCTCCACTTAATATAGCCGACGCAAAGTTCCTGCACAAAAACACACAACATTTAAATATATGGGTCATTAAAGGAATGGATGCATCGCAGCAATCCTTGGCTGAAACTTTGGCCAGTGGCACGCCTGCTACGTCGGGGTCATCTGGTAATGTGGTTAATTATATGGGTCAAATGGCCATGGCAATGGGAAAGCTCGGAACTCTTGATGGCTTCCTACGCCAGGCCGATAATCTTCGTCAACAAACACTTCAACAAATGCATCGCATATTGACAACCCGTCAATCAGCTCGTGCGCTTCTTGCAATAAACGACTACTTCTCCCGCCTTCGAGCTCTAAGCTCTCTCTGGCTTGCACGGCCACGAGAGTGAAAGGGGCATGGGAGTTCTCTCTAGTTAATCTGTCAAATTTATCAAACAAGTGCCTGAAGTGTGCTACCACACAGAATTGCATTGCTTCATTGGATGAAGCTGCTTCTGTCATAGGAATTGTACAATGGATGAAGATGAGTGATGGTGGTGTAGGGTGAAGTTTGTGATTGATATATACATATATATAGCTTTCACATTTTCAGTTGTTTAGTGTCGGTTGGTGATATTGTATGCTTATTACAATAATCTTTTCAGGTGATGTTTCATAGAACTGAATGGGAAAATAGGTTGTATCTGTAACTTACATTTGTATTACATCAACCTACACCAGAGATCATATTATAATTTATTTTCAAATAATATTCTTTGAGTAAGTAAACCATTTTGAGTTTACTGCAAAA

Coding sequence (CDS)

ATGTTGTCCGGGAACCCCGGGAGCTCCCCCACCACCTCGGCTTTGCCCGTCCCCAGCCAGTACTTGAGAATCCTGCACTTGGTGGTCTCCGCGAGTAGAAGGAAATCCCTGTTTTTGCTCAGTGACACTCCGTTCGGAAATGAAGGGTTTCCCAACAGAAGGCTTAGTTGTTTGGATTTTGGATCATATTTCATTAGCCTTCCTGAACTGTCTCCACTTAATATAGCCGACGCAAAGTTCCTGCACAAAAACACACAACATTTAAATATATGGGTCATTAAAGGAATGGATGCATCGCAGCAATCCTTGGCTGAAACTTTGGCCAGTGGCACGCCTGCTACGTCGGGGTCATCTGGTAATGTGGTTAATTATATGGGTCAAATGGCCATGGCAATGGGAAAGCTCGGAACTCTTGATGGCTTCCTACGCCAGGCCGATAATCTTCGTCAACAAACACTTCAACAAATGCATCGCATATTGACAACCCGTCAATCAGCTCGTGCGCTTCTTGCAATAAACGACTACTTCTCCCGCCTTCGAGCTCTAAGCTCTCTCTGGCTTGCACGGCCACGAGAGTGA

Protein sequence

MLSGNPGSSPTTSALPVPSQYLRILHLVVSASRRKSLFLLSDTPFGNEGFPNRRLSCLDFGSYFISLPELSPLNIADAKFLHKNTQHLNIWVIKGMDASQQSLAETLASGTPATSGSSGNVVNYMGQMAMAMGKLGTLDGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE

Homology

[Close]

BLAST of CmoCh06G000150.1 vs. ExPASy Swiss-Prot
Match: O24160 (TGACG-sequence-specific DNA-binding protein TGA-2.1 OS=Nicotiana tabacum OX=4097 GN=TGA21 PE=1 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.7e-41
Identity = 91/126 (72.22%), Postives = 105/126 (83.33%), Query Frame = 0


Query: 67  LPELSPLNIADAKFLHKNTQHLNIWVIKGMDASQQSLAETLASGTPATSGSSGNVVNYMG 126
           L  L+   +A    L +++      + +GM+A QQSLAETLA+G+PA  GSSG+V NYMG
Sbjct: 328 LEPLTEQQLAGIYNLQQSSHQAEDALSQGMEALQQSLAETLANGSPAPEGSSGDVANYMG 387

Query: 127 QMAMAMGKLGTLDGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLW 186
           QMAMAMGKLGTL+GFLRQADNLRQQTLQQMHR+LTTRQSARALLAIN+YFSRLRALSSLW
Sbjct: 388 QMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRVLTTRQSARALLAINEYFSRLRALSSLW 447

Query: 187 LARPRE 193
           LARPRE
Sbjct: 448 LARPRE 453

[Close]

BLAST of CmoCh06G000150.1 vs. ExPASy Swiss-Prot
Match: Q6IVC2 (Transcription factor TGAL1 OS=Oryza sativa subsp. japonica OX=39947 GN=TGAL1 PE=1 SV=2)

HSP 1 Score: 162.9 bits (411), Expect = 3.5e-39
Identity = 90/126 (71.43%), Postives = 102/126 (80.95%), Query Frame = 0


Query: 67  LPELSPLNIADAKFLHKNTQHLNIWVIKGMDASQQSLAETLASGTPATSGSSGNVVNYMG 126
           L  L+   +A    L +++Q     + +GM+A QQSLAETLASG+   +GSSGNV NYMG
Sbjct: 347 LEPLTEQQLAGIANLQQSSQQAEDALSQGMEALQQSLAETLASGSLGPAGSSGNVANYMG 406

Query: 127 QMAMAMGKLGTLDGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLW 186
           QMAMAMGKLGTL+ FLRQADNLR QTLQQM RILTTRQSARALLAI+DYFSRLRALSSLW
Sbjct: 407 QMAMAMGKLGTLENFLRQADNLRLQTLQQMQRILTTRQSARALLAISDYFSRLRALSSLW 466

Query: 187 LARPRE 193
           LARPRE
Sbjct: 467 LARPRE 472

[Close]

BLAST of CmoCh06G000150.1 vs. ExPASy Swiss-Prot
Match: Q41558 (Transcription factor HBP-1b(c1) (Fragment) OS=Triticum aestivum OX=4565 PE=1 SV=2)

HSP 1 Score: 158.7 bits (400), Expect = 6.6e-38
Identity = 86/112 (76.79%), Postives = 97/112 (86.61%), Query Frame = 0


Query: 81  LHKNTQHLNIWVIKGMDASQQSLAETLASGTPATSGSSGNVVNYMGQMAMAMGKLGTLDG 140
           L +++Q     + +GM+A QQSLAETLASG+   +GSSGNV +YMGQMAMAMGKLGTL+ 
Sbjct: 365 LQQSSQQAEDALSQGMEALQQSLAETLASGSLGPAGSSGNVASYMGQMAMAMGKLGTLEN 424

Query: 141 FLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE 193
           FLRQADNLR QTLQQM RILTTRQSARALLAI+DYFSRLRALSSLWLARPRE
Sbjct: 425 FLRQADNLRLQTLQQMQRILTTRQSARALLAISDYFSRLRALSSLWLARPRE 476

[Close]

BLAST of CmoCh06G000150.1 vs. ExPASy Swiss-Prot
Match: Q0JNL3 (Transcription factor TGA2.3 OS=Oryza sativa subsp. japonica OX=39947 GN=TGA2.3 PE=1 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.1e-36
Identity = 86/126 (68.25%), Postives = 101/126 (80.16%), Query Frame = 0


Query: 67  LPELSPLNIADAKFLHKNTQHLNIWVIKGMDASQQSLAETLASGTPATSGSSGNVVNYMG 126
           L  L+   ++    L +++Q     + +GM+A QQSLAETLA G+  +SGS+GNV NYMG
Sbjct: 205 LEPLTEQQLSGIANLQQSSQQAEDALSQGMEALQQSLAETLA-GSLGSSGSTGNVANYMG 264

Query: 127 QMAMAMGKLGTLDGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLW 186
           QMAMAMGKLGTL+ FLRQADNLRQQTLQQM RILTTRQSARALL I+DY SRLRALSSLW
Sbjct: 265 QMAMAMGKLGTLENFLRQADNLRQQTLQQMQRILTTRQSARALLVISDYSSRLRALSSLW 324

Query: 187 LARPRE 193
           LARP+E
Sbjct: 325 LARPKE 329

[Close]

BLAST of CmoCh06G000150.1 vs. ExPASy Swiss-Prot
Match: Q6IVC3 (Transcription factor TGA2.2 OS=Oryza sativa subsp. japonica OX=39947 GN=TGA2.2 PE=1 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 6.2e-36
Identity = 84/112 (75.00%), Postives = 95/112 (84.82%), Query Frame = 0


Query: 81  LHKNTQHLNIWVIKGMDASQQSLAETLASGTPATSGSSGNVVNYMGQMAMAMGKLGTLDG 140
           L +++Q     + +GM+A QQSLA+TLA G+   SGSSGNV NYMGQMAMAMGKLGTL+ 
Sbjct: 223 LQQSSQQAEDALSQGMEALQQSLADTLA-GSLGPSGSSGNVANYMGQMAMAMGKLGTLEN 282

Query: 141 FLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE 193
           FLRQADNLRQQTL QM RILT RQ+ARALLAI+DYFSRLRALSSLWLARPRE
Sbjct: 283 FLRQADNLRQQTLHQMQRILTIRQAARALLAIHDYFSRLRALSSLWLARPRE 333

[Close]

BLAST of CmoCh06G000150.1 vs. ExPASy TrEMBL
Match: A0A6J1F513 (TGACG-sequence-specific DNA-binding protein TGA-2.1-like OS=Cucurbita moschata OX=3662 GN=LOC111440933 PE=4 SV=1)

HSP 1 Score: 375.2 bits (962), Expect = 1.7e-100
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 1   MLSGNPGSSPTTSALPVPSQYLRILHLVVSASRRKSLFLLSDTPFGNEGFPNRRLSCLDF 60
           MLSGNPGSSPTTSALPVPSQYLRILHLVVSASRRKSLFLLSDTPFGNEGFPNRRLSCLDF
Sbjct: 1   MLSGNPGSSPTTSALPVPSQYLRILHLVVSASRRKSLFLLSDTPFGNEGFPNRRLSCLDF 60

Query: 61  GSYFISLPELSPLNIADAKFLHKNTQHLNIWVIKGMDASQQSLAETLASGTPATSGSSGN 120
           GSYFISLPELSPLNIADAKFLHKNTQHLNIWVIKGMDASQQSLAETLASGTPATSGSSGN
Sbjct: 61  GSYFISLPELSPLNIADAKFLHKNTQHLNIWVIKGMDASQQSLAETLASGTPATSGSSGN 120

Query: 121 VVNYMGQMAMAMGKLGTLDGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLR 180
           VVNYMGQMAMAMGKLGTLDGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLR
Sbjct: 121 VVNYMGQMAMAMGKLGTLDGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLR 180

Query: 181 ALSSLWLARPRE 193
           ALSSLWLARPRE
Sbjct: 181 ALSSLWLARPRE 192

[Close]

BLAST of CmoCh06G000150.1 vs. ExPASy TrEMBL
Match: A0A6J1I655 (transcription factor HBP-1b(C38)-like OS=Cucurbita maxima OX=3661 GN=LOC111469991 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.9e-43
Identity = 101/126 (80.16%), Postives = 108/126 (85.71%), Query Frame = 0


Query: 67  LPELSPLNIADAKFLHKNTQHLNIWVIKGMDASQQSLAETLASGTPATSGSSGNVVNYMG 126
           L  L+   +A+   L + +Q     + +GMDA QQSLAETLASGTPATSGSSGNV NYMG
Sbjct: 341 LEPLTEQQVAEICNLQQLSQQAEDALSQGMDALQQSLAETLASGTPATSGSSGNVANYMG 400

Query: 127 QMAMAMGKLGTLDGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLW 186
           QMAMAMGKLGTLDGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLW
Sbjct: 401 QMAMAMGKLGTLDGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLW 460

Query: 187 LARPRE 193
           LARPRE
Sbjct: 461 LARPRE 466

[Close]

BLAST of CmoCh06G000150.1 vs. ExPASy TrEMBL
Match: A0A6J1I2P8 (TGACG-sequence-specific DNA-binding protein TGA-2.1-like OS=Cucurbita maxima OX=3661 GN=LOC111469998 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.9e-43
Identity = 101/126 (80.16%), Postives = 108/126 (85.71%), Query Frame = 0


Query: 67  LPELSPLNIADAKFLHKNTQHLNIWVIKGMDASQQSLAETLASGTPATSGSSGNVVNYMG 126
           L  L+   +A+   L + +Q     + +GMDA QQSLAETLASGTPATSGSSGNV NYMG
Sbjct: 111 LEPLTEQQVAEICNLQQLSQQAEDALSQGMDALQQSLAETLASGTPATSGSSGNVANYMG 170

Query: 127 QMAMAMGKLGTLDGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLW 186
           QMAMAMGKLGTLDGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLW
Sbjct: 171 QMAMAMGKLGTLDGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLW 230

Query: 187 LARPRE 193
           LARPRE
Sbjct: 231 LARPRE 236

[Close]

BLAST of CmoCh06G000150.1 vs. ExPASy TrEMBL
Match: A0A6J1I868 (transcription factor HBP-1b(C38)-like OS=Cucurbita maxima OX=3661 GN=LOC111470067 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.9e-43
Identity = 101/126 (80.16%), Postives = 108/126 (85.71%), Query Frame = 0


Query: 67  LPELSPLNIADAKFLHKNTQHLNIWVIKGMDASQQSLAETLASGTPATSGSSGNVVNYMG 126
           L  L+   +A+   L + +Q     + +GMDA QQSLAETLASGTPATSGSSGNV NYMG
Sbjct: 181 LEPLTEQQVAEICNLQQLSQQAEDALSQGMDALQQSLAETLASGTPATSGSSGNVANYMG 240

Query: 127 QMAMAMGKLGTLDGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLW 186
           QMAMAMGKLGTLDGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLW
Sbjct: 241 QMAMAMGKLGTLDGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLW 300

Query: 187 LARPRE 193
           LARPRE
Sbjct: 301 LARPRE 306

[Close]

BLAST of CmoCh06G000150.1 vs. ExPASy TrEMBL
Match: A0A6J1EZ86 (transcription factor HBP-1b(C38)-like OS=Cucurbita moschata OX=3662 GN=LOC111440904 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.9e-43
Identity = 101/126 (80.16%), Postives = 108/126 (85.71%), Query Frame = 0


Query: 67  LPELSPLNIADAKFLHKNTQHLNIWVIKGMDASQQSLAETLASGTPATSGSSGNVVNYMG 126
           L  L+   +A+   L + +Q     + +GMDA QQSLAETLASGTPATSGSSGNV NYMG
Sbjct: 341 LEPLTEQQVAEICNLQQLSQQAEDALSQGMDALQQSLAETLASGTPATSGSSGNVANYMG 400

Query: 127 QMAMAMGKLGTLDGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLW 186
           QMAMAMGKLGTLDGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLW
Sbjct: 401 QMAMAMGKLGTLDGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLW 460

Query: 187 LARPRE 193
           LARPRE
Sbjct: 461 LARPRE 466

[Close]

BLAST of CmoCh06G000150.1 vs. TAIR 10
Match: AT5G06950.1 (bZIP transcription factor family protein )

HSP 1 Score: 151.8 bits (382), Expect = 5.8e-37
Identity = 83/112 (74.11%), Postives = 97/112 (86.61%), Query Frame = 0


Query: 81  LHKNTQHLNIWVIKGMDASQQSLAETLASGTPATSGSSGNVVNYMGQMAMAMGKLGTLDG 140
           L + +Q     + +GM++ QQSLA+TL+SGT  +S SSGNV +YMGQMAMAMGKLGTL+G
Sbjct: 220 LQQTSQQAEDALSQGMESLQQSLADTLSSGTLGSS-SSGNVASYMGQMAMAMGKLGTLEG 279

Query: 141 FLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE 193
           F+RQADNLR QTLQQM R+LTTRQSARALLAI+DYFSRLRALSSLWLARPRE
Sbjct: 280 FIRQADNLRLQTLQQMIRVLTTRQSARALLAIHDYFSRLRALSSLWLARPRE 330

[Close]

BLAST of CmoCh06G000150.1 vs. TAIR 10
Match: AT5G06950.2 (bZIP transcription factor family protein )

HSP 1 Score: 151.8 bits (382), Expect = 5.8e-37
Identity = 83/112 (74.11%), Postives = 97/112 (86.61%), Query Frame = 0


Query: 81  LHKNTQHLNIWVIKGMDASQQSLAETLASGTPATSGSSGNVVNYMGQMAMAMGKLGTLDG 140
           L + +Q     + +GM++ QQSLA+TL+SGT  +S SSGNV +YMGQMAMAMGKLGTL+G
Sbjct: 220 LQQTSQQAEDALSQGMESLQQSLADTLSSGTLGSS-SSGNVASYMGQMAMAMGKLGTLEG 279

Query: 141 FLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE 193
           F+RQADNLR QTLQQM R+LTTRQSARALLAI+DYFSRLRALSSLWLARPRE
Sbjct: 280 FIRQADNLRLQTLQQMIRVLTTRQSARALLAIHDYFSRLRALSSLWLARPRE 330

[Close]

BLAST of CmoCh06G000150.1 vs. TAIR 10
Match: AT5G06950.3 (bZIP transcription factor family protein )

HSP 1 Score: 151.8 bits (382), Expect = 5.8e-37
Identity = 83/112 (74.11%), Postives = 97/112 (86.61%), Query Frame = 0


Query: 81  LHKNTQHLNIWVIKGMDASQQSLAETLASGTPATSGSSGNVVNYMGQMAMAMGKLGTLDG 140
           L + +Q     + +GM++ QQSLA+TL+SGT  +S SSGNV +YMGQMAMAMGKLGTL+G
Sbjct: 220 LQQTSQQAEDALSQGMESLQQSLADTLSSGTLGSS-SSGNVASYMGQMAMAMGKLGTLEG 279

Query: 141 FLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE 193
           F+RQADNLR QTLQQM R+LTTRQSARALLAI+DYFSRLRALSSLWLARPRE
Sbjct: 280 FIRQADNLRLQTLQQMIRVLTTRQSARALLAIHDYFSRLRALSSLWLARPRE 330

[Close]

BLAST of CmoCh06G000150.1 vs. TAIR 10
Match: AT5G06950.4 (bZIP transcription factor family protein )

HSP 1 Score: 151.8 bits (382), Expect = 5.8e-37
Identity = 83/112 (74.11%), Postives = 97/112 (86.61%), Query Frame = 0


Query: 81  LHKNTQHLNIWVIKGMDASQQSLAETLASGTPATSGSSGNVVNYMGQMAMAMGKLGTLDG 140
           L + +Q     + +GM++ QQSLA+TL+SGT  +S SSGNV +YMGQMAMAMGKLGTL+G
Sbjct: 220 LQQTSQQAEDALSQGMESLQQSLADTLSSGTLGSS-SSGNVASYMGQMAMAMGKLGTLEG 279

Query: 141 FLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE 193
           F+RQADNLR QTLQQM R+LTTRQSARALLAI+DYFSRLRALSSLWLARPRE
Sbjct: 280 FIRQADNLRLQTLQQMIRVLTTRQSARALLAIHDYFSRLRALSSLWLARPRE 330

[Close]

BLAST of CmoCh06G000150.1 vs. TAIR 10
Match: AT3G12250.1 (TGACG motif-binding factor 6 )

HSP 1 Score: 144.4 bits (363), Expect = 9.2e-35
Identity = 80/112 (71.43%), Postives = 95/112 (84.82%), Query Frame = 0


Query: 81  LHKNTQHLNIWVIKGMDASQQSLAETLASGTPATSGSSGNVVNYMGQMAMAMGKLGTLDG 140
           L + +Q     + +GM++ QQSLA+TL+SGT  +S SS NV +YMGQMAMAMG+LGTL+G
Sbjct: 220 LQQTSQQAEDALSQGMESLQQSLADTLSSGTLGSS-SSDNVASYMGQMAMAMGQLGTLEG 279

Query: 141 FLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE 193
           F+RQADNLR QTLQQM R+LTTRQSARALLAI+DY SRLRALSSLWLARPRE
Sbjct: 280 FIRQADNLRLQTLQQMLRVLTTRQSARALLAIHDYSSRLRALSSLWLARPRE 330

The following BLAST results are available for this feature:

BLAST of CmoCh06G000150.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O24160	1.7e-41	72.22	TGACG-sequence-specific DNA-binding protein TGA-2.1 OS=Nicotiana tabacum OX=4097...	[more]
Q6IVC2	3.5e-39	71.43	Transcription factor TGAL1 OS=Oryza sativa subsp. japonica OX=39947 GN=TGAL1 PE=...	[more]
Q41558	6.6e-38	76.79	Transcription factor HBP-1b(c1) (Fragment) OS=Triticum aestivum OX=4565 PE=1 SV=...	[more]
Q0JNL3	2.1e-36	68.25	Transcription factor TGA2.3 OS=Oryza sativa subsp. japonica OX=39947 GN=TGA2.3 P...	[more]
Q6IVC3	6.2e-36	75.00	Transcription factor TGA2.2 OS=Oryza sativa subsp. japonica OX=39947 GN=TGA2.2 P...	[more]

BLAST of CmoCh06G000150.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F513	1.7e-100	100.00	TGACG-sequence-specific DNA-binding protein TGA-2.1-like OS=Cucurbita moschata O...	[more]
A0A6J1I655	1.9e-43	80.16	transcription factor HBP-1b(C38)-like OS=Cucurbita maxima OX=3661 GN=LOC11146999...	[more]
A0A6J1I2P8	1.9e-43	80.16	TGACG-sequence-specific DNA-binding protein TGA-2.1-like OS=Cucurbita maxima OX=...	[more]
A0A6J1I868	1.9e-43	80.16	transcription factor HBP-1b(C38)-like OS=Cucurbita maxima OX=3661 GN=LOC11147006...	[more]
A0A6J1EZ86	1.9e-43	80.16	transcription factor HBP-1b(C38)-like OS=Cucurbita moschata OX=3662 GN=LOC111440...	[more]

BLAST of CmoCh06G000150.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06950.1	5.8e-37	74.11	bZIP transcription factor family protein	[more]
AT5G06950.2	5.8e-37	74.11	bZIP transcription factor family protein	[more]
AT5G06950.3	5.8e-37	74.11	bZIP transcription factor family protein	[more]
AT5G06950.4	5.8e-37	74.11	bZIP transcription factor family protein	[more]
AT3G12250.1	9.2e-35	71.43	TGACG motif-binding factor 6	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR45693:SF53	TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1	coord: 91..192
None	No IPR available	PANTHER	PTHR45693	TRANSCRIPTION FACTOR TGA9	coord: 91..192
IPR025422	Transcription factor TGA like domain	PROSITE	PS51806	DOG1	coord: 1..189 score: 13.303358

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh06G000150	CmoCh06G000150	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G000150.1:exon:8647	CmoCh06G000150.1:exon:8647	exon
CmoCh06G000150.1:exon:8646	CmoCh06G000150.1:exon:8646	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G000150.1:three_prime_utr	CmoCh06G000150.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G000150.1:cds	CmoCh06G000150.1:cds_2	CDS
CmoCh06G000150.1:cds	CmoCh06G000150.1:cds	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G000150.1:five_prime_utr	CmoCh06G000150.1:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh06G000150.1	CmoCh06G000150.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0000976	transcription cis-regulatory region binding