CmoCh05G011350.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh05G011350.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Histone H2A
Location	Cmo_Chr05: 9042273 .. 9043122 (-)
Sequence length	757
RNA-Seq Expression	CmoCh05G011350.1
Synteny	CmoCh05G011350.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCGGATAATATACAGTTCATCTATTGATCGTTGCAATTAATCTTCGAATTCCGGAACTTAGATTCTGAATTTTCAACCATGGAAGGAACCAAAGGCGCCGGTGGAAGAAAAGGTGGTAACAGAAGTAAGATATCGAAGTCGGCGAAGGCCGGACTGCAATTTCCTGTCGCAAGGATCGGTCGGTACCTTAAGAAAGGCCGTTATGCACAGCGCACTGGCGCCGGAGCTCCGATCTACTTGGCTGCTGTCCTCGAATATCTCGCCGCTGAGGTAGTTTATCATTTGAGATGAGATTCATCTTCATTCGCATTCCTAGAACGTAAACAGTTCTCGATTTTAAAATTTGTGTTGATCGTAATGTAGGTTTTGGAATTGGCTGGGAATGCTGCTCGTGACAACAAGAAGAACAGGATAAACCCTAGGCATGTTCTTCTGGCTGTGAGGAATGATGAGGAGCTTGGAAAATTGCTTCAAGGAGTCACCATTGCCAGTGGTGGTGTTCTTCCAAACATCCATCCAGTCCTCCTTCCCAAGAAGTCATCGTCGAATTCCACTTCTCCTGCAGAAAAGGCTCAGAAATCGCCAAAGAAGGCCTAAATTAAGTAAATGTTTCCGAGAATGATTTTTTAACTTTTCTTTTTGTGTATAAATTTAGTGCTCTCTTCTTGAATCCCTAGTTTCTTAGAAGAACTAGCTGTTTTGATCTCTAGTTTCTGTCTGATGTACGTATCCATTTCACAATATCGATTGGGAACACAATCGTTTTCAAGTGTTCTGTTCTCGTCATTTTTCTCTGTGAATATCAGTTCTCTTTGTAATGTACATCAAAAGTCAGAATCAAATTCTCCGT

mRNA sequence

TCGGATAATATACAGTTCATCTATTGATCGTTGCAATTAATCTTCGAATTCCGGAACTTAGATTCTGAATTTTCAACCATGGAAGGAACCAAAGGCGCCGGTGGAAGAAAAGGTGGTAACAGAAGTAAGATATCGAAGTCGGCGAAGGCCGGACTGCAATTTCCTGTCGCAAGGATCGGTCGGTACCTTAAGAAAGGCCGTTATGCACAGCGCACTGGCGCCGGAGCTCCGATCTACTTGGCTGCTGTCCTCGAATATCTCGCCGCTGAGGTTTTGGAATTGGCTGGGAATGCTGCTCGTGACAACAAGAAGAACAGGATAAACCCTAGGCATGTTCTTCTGGCTGTGAGGAATGATGAGGAGCTTGGAAAATTGCTTCAAGGAGTCACCATTGCCAGTGGTGGTGTTCTTCCAAACATCCATCCAGTCCTCCTTCCCAAGAAGTCATCGTCGAATTCCACTTCTCCTGCAGAAAAGGCTCAGAAATCGCCAAAGAAGGCCTAAATTAAGTAAATGTTTCCGAGAATGATTTTTTAACTTTTCTTTTTGTGTATAAATTTAGTGCTCTCTTCTTGAATCCCTAGTTTCTTAGAAGAACTAGCTGTTTTGATCTCTAGTTTCTGTCTGATGTACGTATCCATTTCACAATATCGATTGGGAACACAATCGTTTTCAAGTGTTCTGTTCTCGTCATTTTTCTCTGTGAATATCAGTTCTCTTTGTAATGTACATCAAAAGTCAGAATCAAATTCTCCGT

Coding sequence (CDS)

ATGGAAGGAACCAAAGGCGCCGGTGGAAGAAAAGGTGGTAACAGAAGTAAGATATCGAAGTCGGCGAAGGCCGGACTGCAATTTCCTGTCGCAAGGATCGGTCGGTACCTTAAGAAAGGCCGTTATGCACAGCGCACTGGCGCCGGAGCTCCGATCTACTTGGCTGCTGTCCTCGAATATCTCGCCGCTGAGGTTTTGGAATTGGCTGGGAATGCTGCTCGTGACAACAAGAAGAACAGGATAAACCCTAGGCATGTTCTTCTGGCTGTGAGGAATGATGAGGAGCTTGGAAAATTGCTTCAAGGAGTCACCATTGCCAGTGGTGGTGTTCTTCCAAACATCCATCCAGTCCTCCTTCCCAAGAAGTCATCGTCGAATTCCACTTCTCCTGCAGAAAAGGCTCAGAAATCGCCAAAGAAGGCCTAA

Protein sequence

MEGTKGAGGRKGGNRSKISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLPKKSSSNSTSPAEKAQKSPKKA

Homology

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BLAST of CmoCh05G011350.1 vs. ExPASy Swiss-Prot
Match: P25469 (Histone H2A.1 OS=Solanum lycopersicum OX=4081 PE=2 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 6.3e-54
Identity = 118/140 (84.29%), Postives = 125/140 (89.29%), Query Frame = 0


Query: 4   TKGAGGRKGGNRSK-ISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEYLA 63
           TKGAGGRKGG R K ++KS KAGLQFPV RIGRYLKKGRYAQR G+GAPIYLAAVLEYLA
Sbjct: 7   TKGAGGRKGGPRKKSVTKSIKAGLQFPVGRIGRYLKKGRYAQRVGSGAPIYLAAVLEYLA 66

Query: 64  AEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLPKK 123
           AEVLELAGNAARDNKK+RI PRHVLLAVRNDEELGKLL GVTIASGGVLPNI+PVLLPKK
Sbjct: 67  AEVLELAGNAARDNKKSRIIPRHVLLAVRNDEELGKLLAGVTIASGGVLPNINPVLLPKK 126

Query: 124 SS-SNSTSPAEKAQKSPKKA 142
           S+ +   SP  KA KSPKKA
Sbjct: 127 SAVAEEKSPKAKAGKSPKKA 146

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BLAST of CmoCh05G011350.1 vs. ExPASy Swiss-Prot
Match: Q94F49 (Probable histone H2A.5 OS=Arabidopsis thaliana OX=3702 GN=At5g27670 PE=1 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.2e-52
Identity = 115/141 (81.56%), Postives = 127/141 (90.07%), Query Frame = 0


Query: 4   TKGAGGRKGGNRSK-ISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEYLA 63
           T+GAGGRKGG+R K +SKS KAGLQFPV RI RYLKKGRYA R G+GAP+YLAAVLEYLA
Sbjct: 11  TRGAGGRKGGDRKKSVSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYLAAVLEYLA 70

Query: 64  AEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLPKK 123
           AEVLELAGNAARDNKKNRINPRH+ LA+RNDEELG+LL GVTIASGGVLPNI+PVLLPKK
Sbjct: 71  AEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVLLPKK 130

Query: 124 SSSNSTSPAEKAQ--KSPKKA 142
           S++ S+S AEKA   KSPKKA
Sbjct: 131 STA-SSSQAEKASATKSPKKA 150

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BLAST of CmoCh05G011350.1 vs. ExPASy Swiss-Prot
Match: Q2HU68 (Probable histone H2A.1 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g1v1 PE=3 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 1.7e-51
Identity = 111/140 (79.29%), Postives = 122/140 (87.14%), Query Frame = 0


Query: 5   KGAGGRKGGNRSK-ISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEYLAA 64
           KGAGGRKGG R K +++S +AGLQFPV RIGRYLKKGRYAQR G GAP+YLAAVLEYLAA
Sbjct: 9   KGAGGRKGGPRKKSVTRSTRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAA 68

Query: 65  EVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLPKKS 124
           EVLELAGNAARDNKKNRI PRHVLLAVRNDEELGKLL GVTIA GGVLPNI+P+LLPKK+
Sbjct: 69  EVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPILLPKKN 128

Query: 125 --SSNSTSPAEKAQKSPKKA 142
             ++ +T    KA KSPKKA
Sbjct: 129 EKAATTTKSPSKATKSPKKA 148

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BLAST of CmoCh05G011350.1 vs. ExPASy Swiss-Prot
Match: Q2HU65 (Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 3.9e-51
Identity = 112/145 (77.24%), Postives = 122/145 (84.14%), Query Frame = 0


Query: 5   KGAGGRKGG--NRSKISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEYLA 64
           KGAGGRKGG   +  +++S +AGLQFPV RIGRYLKKGRYAQR G GAP+YLAAVLEYLA
Sbjct: 9   KGAGGRKGGGPRKKSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLA 68

Query: 65  AEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLPKK 124
           AEVLELAGNAARDNKKNRI PRHVLLAVRNDEELGKLL GVTIA GGVLPNI+PVLLPKK
Sbjct: 69  AEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 128

Query: 125 SSSNST------SPAEKAQKSPKKA 142
           +  ++T      SP  KA KSPKKA
Sbjct: 129 TERSNTVSKEPKSPKPKAGKSPKKA 153

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BLAST of CmoCh05G011350.1 vs. ExPASy Swiss-Prot
Match: P40280 (Histone H2A OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 5.6e-50
Identity = 110/142 (77.46%), Postives = 120/142 (84.51%), Query Frame = 0


Query: 2   EGTKGAGGRK-GGNRSK-ISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLE 61
           +G KGA GRK GG R K +S+S KAGLQFPV RIGRYLKKGRYAQ  G GAP+YLAAVLE
Sbjct: 11  KGKKGAAGRKVGGPRKKSVSRSVKAGLQFPVGRIGRYLKKGRYAQXVGTGAPVYLAAVLE 70

Query: 62  YLAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLL 121
           YLAAEVLELAGNAARDNKK RI PRHVLLA+RNDEELGKLL GVTIA GGVLPNI+PVLL
Sbjct: 71  YLAAEVLELAGNAARDNKKTRIIPRHVLLAIRNDEELGKLLGGVTIAHGGVLPNINPVLL 130

Query: 122 PKKSSSNSTSPAEKAQKSPKKA 142
           PKK++  ++S   K  KSPKKA
Sbjct: 131 PKKTAEKASSGGSKEAKSPKKA 152

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BLAST of CmoCh05G011350.1 vs. ExPASy TrEMBL
Match: A0A6J1G397 (Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111450390 PE=3 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 1.8e-67
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MEGTKGAGGRKGGNRSKISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEY 60
           MEGTKGAGGRKGGNRSKISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGNRSKISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEY 60

Query: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLP 120
           LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLP 120

Query: 121 KKSSSNSTSPAEKAQKSPKKA 142
           KKSSSNSTSPAEKAQKSPKKA
Sbjct: 121 KKSSSNSTSPAEKAQKSPKKA 141

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BLAST of CmoCh05G011350.1 vs. ExPASy TrEMBL
Match: A0A6J1KE66 (Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111493546 PE=3 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 2.6e-66
Identity = 138/140 (98.57%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MEGTKGAGGRKGGNRSKISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEY 60
           MEGTKGAGGRKGGNRSKISKS KAGLQFPVARIGRYLKKGRYAQRTG+GAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGNRSKISKSVKAGLQFPVARIGRYLKKGRYAQRTGSGAPIYLAAVLEY 60

Query: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLP 120
           LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLP 120

Query: 121 KKSSSNSTSPAEKAQKSPKK 141
           KKSSSNSTSPAEKAQKSPKK
Sbjct: 121 KKSSSNSTSPAEKAQKSPKK 140

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BLAST of CmoCh05G011350.1 vs. ExPASy TrEMBL
Match: A0A0A0LLV9 (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_2G030610 PE=3 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 8.6e-62
Identity = 130/141 (92.20%), Postives = 136/141 (96.45%), Query Frame = 0


Query: 1   MEGTKGAGGRKGGNRSKISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEY 60
           MEGTKGAGGRKGG+R+K+SKS KAGLQFPV RIGRYLKKGRYAQRT AGAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAQRTAAGAPIYLAAVLEY 60

Query: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLP 120
           LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNI+PVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120

Query: 121 KKSSSNSTSPAEKAQKSPKKA 142
           KK++SNST  AEKAQKSPKKA
Sbjct: 121 KKTASNSTPTAEKAQKSPKKA 141

[Close]

BLAST of CmoCh05G011350.1 vs. ExPASy TrEMBL
Match: A0A5A7TYC1 (Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00570 PE=3 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.5e-61
Identity = 129/141 (91.49%), Postives = 136/141 (96.45%), Query Frame = 0


Query: 1   MEGTKGAGGRKGGNRSKISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEY 60
           MEGTKGAGGRKGG+R+K+SKS KAGLQFPV RIGRYLKKGRYA+RT AGAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60

Query: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLP 120
           LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNI+PVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120

Query: 121 KKSSSNSTSPAEKAQKSPKKA 142
           KK++SNST  AEKAQKSPKKA
Sbjct: 121 KKTASNSTPTAEKAQKSPKKA 141

[Close]

BLAST of CmoCh05G011350.1 vs. ExPASy TrEMBL
Match: A0A1S3BZ15 (Histone H2A OS=Cucumis melo OX=3656 GN=LOC103494731 PE=3 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.5e-61
Identity = 129/141 (91.49%), Postives = 136/141 (96.45%), Query Frame = 0


Query: 1   MEGTKGAGGRKGGNRSKISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEY 60
           MEGTKGAGGRKGG+R+K+SKS KAGLQFPV RIGRYLKKGRYA+RT AGAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60

Query: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLP 120
           LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNI+PVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120

Query: 121 KKSSSNSTSPAEKAQKSPKKA 142
           KK++SNST  AEKAQKSPKKA
Sbjct: 121 KKTASNSTPTAEKAQKSPKKA 141

[Close]

BLAST of CmoCh05G011350.1 vs. NCBI nr
Match: XP_022946249.1 (histone H2A.1-like [Cucurbita moschata] >XP_022946250.1 histone H2A.1-like [Cucurbita moschata] >XP_023545339.1 histone H2A.1-like [Cucurbita pepo subsp. pepo] >KAG6599229.1 hypothetical protein SDJN03_09007, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030234.1 hypothetical protein SDJN02_08581 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 265.0 bits (676), Expect = 3.7e-67
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MEGTKGAGGRKGGNRSKISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEY 60
           MEGTKGAGGRKGGNRSKISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGNRSKISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEY 60

Query: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLP 120
           LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLP 120

Query: 121 KKSSSNSTSPAEKAQKSPKKA 142
           KKSSSNSTSPAEKAQKSPKKA
Sbjct: 121 KKSSSNSTSPAEKAQKSPKKA 141

[Close]

BLAST of CmoCh05G011350.1 vs. NCBI nr
Match: XP_022999035.1 (histone H2A.1-like [Cucurbita maxima])

HSP 1 Score: 261.2 bits (666), Expect = 5.3e-66
Identity = 138/140 (98.57%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MEGTKGAGGRKGGNRSKISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEY 60
           MEGTKGAGGRKGGNRSKISKS KAGLQFPVARIGRYLKKGRYAQRTG+GAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGNRSKISKSVKAGLQFPVARIGRYLKKGRYAQRTGSGAPIYLAAVLEY 60

Query: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLP 120
           LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLP 120

Query: 121 KKSSSNSTSPAEKAQKSPKK 141
           KKSSSNSTSPAEKAQKSPKK
Sbjct: 121 KKSSSNSTSPAEKAQKSPKK 140

[Close]

BLAST of CmoCh05G011350.1 vs. NCBI nr
Match: XP_004144786.1 (probable histone H2A.5 [Cucumis sativus] >KGN60951.1 hypothetical protein Csa_021264 [Cucumis sativus])

HSP 1 Score: 246.1 bits (627), Expect = 1.8e-61
Identity = 130/141 (92.20%), Postives = 136/141 (96.45%), Query Frame = 0


Query: 1   MEGTKGAGGRKGGNRSKISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEY 60
           MEGTKGAGGRKGG+R+K+SKS KAGLQFPV RIGRYLKKGRYAQRT AGAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAQRTAAGAPIYLAAVLEY 60

Query: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLP 120
           LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNI+PVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120

Query: 121 KKSSSNSTSPAEKAQKSPKKA 142
           KK++SNST  AEKAQKSPKKA
Sbjct: 121 KKTASNSTPTAEKAQKSPKKA 141

[Close]

BLAST of CmoCh05G011350.1 vs. NCBI nr
Match: XP_008454292.1 (PREDICTED: probable histone H2A.5 [Cucumis melo] >KAA0048024.1 putative histone H2A.5 [Cucumis melo var. makuwa] >TYK13795.1 putative histone H2A.5 [Cucumis melo var. makuwa])

HSP 1 Score: 244.6 bits (623), Expect = 5.2e-61
Identity = 129/141 (91.49%), Postives = 136/141 (96.45%), Query Frame = 0


Query: 1   MEGTKGAGGRKGGNRSKISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEY 60
           MEGTKGAGGRKGG+R+K+SKS KAGLQFPV RIGRYLKKGRYA+RT AGAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60

Query: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLP 120
           LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNI+PVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120

Query: 121 KKSSSNSTSPAEKAQKSPKKA 142
           KK++SNST  AEKAQKSPKKA
Sbjct: 121 KKTASNSTPTAEKAQKSPKKA 141

[Close]

BLAST of CmoCh05G011350.1 vs. NCBI nr
Match: XP_038890710.1 (probable histone H2A.5 [Benincasa hispida])

HSP 1 Score: 243.8 bits (621), Expect = 8.8e-61
Identity = 129/141 (91.49%), Postives = 136/141 (96.45%), Query Frame = 0


Query: 1   MEGTKGAGGRKGGNRSKISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEY 60
           MEGTKGAGGRKGG+R+KISKS KAGLQFPV RIGRYLKKGRYA+RT AGAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGDRTKISKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60

Query: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLP 120
           LAAEVLELAGNAARDNKKNRINPRH+LLAVRNDEELGKLLQGVTIASGGVLPNI+PVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHLLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120

Query: 121 KKSSSNSTSPAEKAQKSPKKA 142
           KK++SNST  AEKAQKSPKKA
Sbjct: 121 KKTASNSTPTAEKAQKSPKKA 141

[Close]

BLAST of CmoCh05G011350.1 vs. TAIR 10
Match: AT5G27670.1 (histone H2A 7 )

HSP 1 Score: 207.2 bits (526), Expect = 8.5e-54
Identity = 115/141 (81.56%), Postives = 127/141 (90.07%), Query Frame = 0


Query: 4   TKGAGGRKGGNRSK-ISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEYLA 63
           T+GAGGRKGG+R K +SKS KAGLQFPV RI RYLKKGRYA R G+GAP+YLAAVLEYLA
Sbjct: 11  TRGAGGRKGGDRKKSVSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYLAAVLEYLA 70

Query: 64  AEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLPKK 123
           AEVLELAGNAARDNKKNRINPRH+ LA+RNDEELG+LL GVTIASGGVLPNI+PVLLPKK
Sbjct: 71  AEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVLLPKK 130

Query: 124 SSSNSTSPAEKAQ--KSPKKA 142
           S++ S+S AEKA   KSPKKA
Sbjct: 131 STA-SSSQAEKASATKSPKKA 150

[Close]

BLAST of CmoCh05G011350.1 vs. TAIR 10
Match: AT5G02560.1 (histone H2A 12 )

HSP 1 Score: 188.3 bits (477), Expect = 4.1e-48
Identity = 106/145 (73.10%), Postives = 120/145 (82.76%), Query Frame = 0


Query: 5   KGAGGRKGGNRSK---ISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEYL 64
           KGA GR+ G   K   +S+S K+GLQFPV RIGRYLKKGRY++R G GAP+YLAAVLEYL
Sbjct: 9   KGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVYLAAVLEYL 68

Query: 65  AAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLPK 124
           AAEVLELAGNAARDNKKNRI PRHVLLAVRNDEELG LL+GVTIA GGVLPNI+P+LLPK
Sbjct: 69  AAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPNINPILLPK 128

Query: 125 KS---SSNSTSP--AEKAQKSPKKA 142
           KS   +S + +P    KA KSPKK+
Sbjct: 129 KSEKAASTTKTPKSPSKATKSPKKS 153

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BLAST of CmoCh05G011350.1 vs. TAIR 10
Match: AT5G59870.1 (histone H2A 6 )

HSP 1 Score: 181.4 bits (459), Expect = 5.0e-46
Identity = 106/141 (75.18%), Postives = 118/141 (83.69%), Query Frame = 0


Query: 5   KGAGGRK--GGNRSK-ISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEYL 64
           K  GGRK  G  ++K +SKS KAGLQFPV RI R+LKKGRYAQR G GAP+Y+AAVLEYL
Sbjct: 9   KAFGGRKPPGAPKTKSVSKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPVYMAAVLEYL 68

Query: 65  AAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLPK 124
           AAEVLELAGNAARDNKK+RI PRH+LLA+RNDEELGKLL GVTIA GGVLPNI+ VLLPK
Sbjct: 69  AAEVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPNINSVLLPK 128

Query: 125 KSSSNSTSPA-EKAQKSPKKA 142
           KS   +T PA EKA KSP K+
Sbjct: 129 KS---ATKPAEEKATKSPVKS 146

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BLAST of CmoCh05G011350.1 vs. TAIR 10
Match: AT5G02560.2 (histone H2A 12 )

HSP 1 Score: 174.9 bits (442), Expect = 4.7e-44
Identity = 106/169 (62.72%), Postives = 120/169 (71.01%), Query Frame = 0


Query: 5   KGAGGRKGGNRSK---ISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEYL 64
           KGA GR+ G   K   +S+S K+GLQFPV RIGRYLKKGRY++R G GAP+YLAAVLEYL
Sbjct: 9   KGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVYLAAVLEYL 68

Query: 65  AAE------------------------VLELAGNAARDNKKNRINPRHVLLAVRNDEELG 124
           AAE                        VLELAGNAARDNKKNRI PRHVLLAVRNDEELG
Sbjct: 69  AAENSCGFCSVASLTIYRCRMSSSDFRVLELAGNAARDNKKNRIIPRHVLLAVRNDEELG 128

Query: 125 KLLQGVTIASGGVLPNIHPVLLPKKS---SSNSTSP--AEKAQKSPKKA 142
            LL+GVTIA GGVLPNI+P+LLPKKS   +S + +P    KA KSPKK+
Sbjct: 129 TLLKGVTIAHGGVLPNINPILLPKKSEKAASTTKTPKSPSKATKSPKKS 177

[Close]

BLAST of CmoCh05G011350.1 vs. TAIR 10
Match: AT5G54640.1 (Histone superfamily protein )

HSP 1 Score: 168.3 bits (425), Expect = 4.4e-42
Identity = 85/115 (73.91%), Postives = 99/115 (86.09%), Query Frame = 0


Query: 12  GGNRSKISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEYLAAEVLELAGN 71
           GG +   S+S+KAGLQFPV RI R+LK G+YA+R GAGAP+YLAAVLEYLAAEVLELAGN
Sbjct: 11  GGAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGN 70

Query: 72  AARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLPKKSSSN 127
           AARDNKK RI PRH+ LAVRNDEEL KLL  VTIA+GGV+PNIH +LLPKK+ ++
Sbjct: 71  AARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGAS 125

The following BLAST results are available for this feature:

BLAST of CmoCh05G011350.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P25469	6.3e-54	84.29	Histone H2A.1 OS=Solanum lycopersicum OX=4081 PE=2 SV=1	[more]
Q94F49	1.2e-52	81.56	Probable histone H2A.5 OS=Arabidopsis thaliana OX=3702 GN=At5g27670 PE=1 SV=1	[more]
Q2HU68	1.7e-51	79.29	Probable histone H2A.1 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g1v1 P...	[more]
Q2HU65	3.9e-51	77.24	Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 P...	[more]
P40280	5.6e-50	77.46	Histone H2A OS=Zea mays OX=4577 PE=2 SV=1	[more]

BLAST of CmoCh05G011350.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G397	1.8e-67	100.00	Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111450390 PE=3 SV=1	[more]
A0A6J1KE66	2.6e-66	98.57	Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111493546 PE=3 SV=1	[more]
A0A0A0LLV9	8.6e-62	92.20	Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_2G030610 PE=3 SV=1	[more]
A0A5A7TYC1	2.5e-61	91.49	Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00570 PE...	[more]
A0A1S3BZ15	2.5e-61	91.49	Histone H2A OS=Cucumis melo OX=3656 GN=LOC103494731 PE=3 SV=1	[more]

BLAST of CmoCh05G011350.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946249.1	3.7e-67	100.00	histone H2A.1-like [Cucurbita moschata] >XP_022946250.1 histone H2A.1-like [Cucu...	[more]
XP_022999035.1	5.3e-66	98.57	histone H2A.1-like [Cucurbita maxima]	[more]
XP_004144786.1	1.8e-61	92.20	probable histone H2A.5 [Cucumis sativus] >KGN60951.1 hypothetical protein Csa_02...	[more]
XP_008454292.1	5.2e-61	91.49	PREDICTED: probable histone H2A.5 [Cucumis melo] >KAA0048024.1 putative histone ...	[more]
XP_038890710.1	8.8e-61	91.49	probable histone H2A.5 [Benincasa hispida]	[more]

BLAST of CmoCh05G011350.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27670.1	8.5e-54	81.56	histone H2A 7	[more]
AT5G02560.1	4.1e-48	73.10	histone H2A 12	[more]
AT5G59870.1	5.0e-46	75.18	histone H2A 6	[more]
AT5G02560.2	4.7e-44	62.72	histone H2A 12	[more]
AT5G54640.1	4.4e-42	73.91	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 16..38 score: 57.89 coord: 102..120 score: 76.69 coord: 45..60 score: 79.88 coord: 60..73 score: 89.46 coord: 74..88 score: 70.35
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 5..125 e-value: 1.6E-74 score: 263.6
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 7..122 e-value: 5.92857E-65 score: 191.394
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 15..91 e-value: 3.7E-13 score: 50.0
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 2..133 e-value: 2.3E-60 score: 204.1
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 17..122
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 94..127 e-value: 5.1E-19 score: 67.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..141
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..134
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR23430:SF267	HISTONE H2A.5-RELATED	coord: 5..136
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 5..136
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 24..30

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh05G011350	CmoCh05G011350	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh05G011350.1:exon:1830	CmoCh05G011350.1:exon:1830	exon
CmoCh05G011350.1:exon:1829	CmoCh05G011350.1:exon:1829	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh05G011350.1:three_prime_utr	CmoCh05G011350.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh05G011350.1:cds	CmoCh05G011350.1:cds_2	CDS
CmoCh05G011350.1:cds	CmoCh05G011350.1:cds	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh05G011350.1:five_prime_utr	CmoCh05G011350.1:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh05G011350.1	CmoCh05G011350.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031507	heterochromatin assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0000775	chromosome, centromeric region
cellular_component	GO:0000792	heterochromatin
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0003682	chromatin binding