CmoCh05G001330.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh05G001330.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Phytosulfokine-beta
Location	Cmo_Chr05: 583382 .. 583766 (+)
Sequence length	293
RNA-Seq Expression	CmoCh05G001330.1
Synteny	CmoCh05G001330.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTCCAGTCGTCTCCATTGTAACCACGAAAATGTCGAAGCTCGCGGCTCTCTTCACCATTGCAGCACTCGTTTCAATGTCCCTCATGCTGCCGTCCTCCGAGGCTCGTCCCATCACTACTCTCACTGCCACTTCTGCCGTAATCGCCAATCCGGTAACGTAAAGTTTCATATCTCCGTTTTAATTTCGGATTGACTATATATTGTTGAACTAAATTTGATGCTTAATTCTACGTATCCCTCCTAGGTGATCGTTTCTGAAGAGGTTTGTAAAGACGACTGCCTGATCAGAAGAACCTTAGAGGCTCATACTGATTACATCTATTCCGGCGACACTAAGCCATGAATTACTTATCTTTTTATATTTTCTCTCATTAATACAGTCTA

mRNA sequence

CCTCCAGTCGTCTCCATTGTAACCACGAAAATGTCGAAGCTCGCGGCTCTCTTCACCATTGCAGCACTCGTTTCAATGTCCCTCATGCTGCCGTCCTCCGAGGCTCGTCCCATCACTACTCTCACTGCCACTTCTGCCGTAATCGCCAATCCGGTGATCGTTTCTGAAGAGGTTTGTAAAGACGACTGCCTGATCAGAAGAACCTTAGAGGCTCATACTGATTACATCTATTCCGGCGACACTAAGCCATGAATTACTTATCTTTTTATATTTTCTCTCATTAATACAGTCTA

Coding sequence (CDS)

ATGTCGAAGCTCGCGGCTCTCTTCACCATTGCAGCACTCGTTTCAATGTCCCTCATGCTGCCGTCCTCCGAGGCTCGTCCCATCACTACTCTCACTGCCACTTCTGCCGTAATCGCCAATCCGGTGATCGTTTCTGAAGAGGTTTGTAAAGACGACTGCCTGATCAGAAGAACCTTAGAGGCTCATACTGATTACATCTATTCCGGCGACACTAAGCCATGA

Protein sequence

MSKLAALFTIAALVSMSLMLPSSEARPITTLTATSAVIANPVIVSEEVCKDDCLIRRTLEAHTDYIYSGDTKP

Homology

[Close]

BLAST of CmoCh05G001330.1 vs. ExPASy Swiss-Prot
Match: Q9FS10 (Phytosulfokines OS=Asparagus officinalis OX=4686 GN=PSK PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.2e-05
Identity = 32/76 (42.11%), Postives = 43/76 (56.58%), Query Frame = 0


Query: 2  SKLAALFTIAALVSMSLMLPSSEARPITTLTATSAVIANPVIVSEEVC----KDDCLIRR 61
          SK   L  IA L S+SL   +  ARP+    +T +V   P  V +E C    +++CL+RR
Sbjct: 3  SKAITLLLIALLFSLSL---AQAARPLQPADSTKSVHVIPEKVHDEACEGVGEEECLMRR 62

Query: 62 TLEAHTDYIYSGDTKP 74
          TL AH DYIY+ D  P
Sbjct: 63 TLTAHVDYIYTQDHNP 75

[Close]

BLAST of CmoCh05G001330.1 vs. ExPASy TrEMBL
Match: A0A6J1BQV2 (Phytosulfokine-beta OS=Momordica charantia OX=3673 GN=LOC111004777 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 6.1e-11
Identity = 51/82 (62.20%), Postives = 61/82 (74.39%), Query Frame = 0


Query: 1   MSK-LAALFTIAALVSMSLMLPSSEARPITTLTATSAVIANPVI---VSEEVCKD----- 60
           MSK LAALF IAAL++MS++L SS+ARPITT +A S  IA+P     V E+ C +     
Sbjct: 22  MSKQLAALFAIAALLTMSVLL-SSQARPITTFSANSVEIAHPDSKDRVHEDGCDERAEDQ 81

Query: 61  DCLIRRTLEAHTDYIYSGDTKP 74
           DCL RRTLEAHTDYIYSG+TKP
Sbjct: 82  DCLNRRTLEAHTDYIYSGETKP 102

[Close]

BLAST of CmoCh05G001330.1 vs. ExPASy TrEMBL
Match: A0A6J1BSJ0 (Phytosulfokine-beta OS=Momordica charantia OX=3673 GN=LOC111005149 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-07
Identity = 45/81 (55.56%), Postives = 53/81 (65.43%), Query Frame = 0


Query: 1  MSKLAALFTIAALVSMSLMLPSSEARPITTLTATSAVIANPV---IVSEEVC-----KDD 60
          M+KLAALFTI ALV    +L SSEARP     ATS  I NPV    V+ ++C      +D
Sbjct: 1  MTKLAALFTIVALVLTMSLLTSSEARP---TIATSVKIVNPVPEETVNGDICDERNPDED 60

Query: 61 CLIRRTLEAHTDYIYSGDTKP 74
          CL RRTL AHTDYIY+ +TKP
Sbjct: 61 CLFRRTLTAHTDYIYT-ETKP 77

[Close]

BLAST of CmoCh05G001330.1 vs. ExPASy TrEMBL
Match: A0A5A7V550 (Phytosulfokine-beta OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G001000 PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 9.4e-04
Identity = 41/85 (48.24%), Postives = 56/85 (65.88%), Query Frame = 0


Query: 3  KLAALFT-IAALVSMS--LMLPSSE-ARPITTLTATSAVIANPVIVS---------EEVC 62
          KLAALFT IAALV++   +++PSSE ARPI +L      I +  +V+         E + 
Sbjct: 4  KLAALFTIIAALVTIMSLIVIPSSEAARPIPSLFKPQNPIVSRELVADHNNEGISCEGLG 63

Query: 63 KDDCLIRRTLEAHTDYIYSGD-TKP 74
          K+DCLI+RTL+AH DY+Y+ D TKP
Sbjct: 64 KEDCLIKRTLQAHIDYVYTCDPTKP 88

[Close]

BLAST of CmoCh05G001330.1 vs. NCBI nr
Match: KAG6598323.1 (Phytosulfokine, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029293.1 Phytosulfokine [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 137.1 bits (344), Expect = 6.0e-29
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MSKLAALFTIAALVSMSLMLPSSEARPITTLTATSAVIANPVIVSEEVCKDDCLIRRTLE 60
          MSKLAALFTIAALVSMSLMLPSSEARPITTLTATSAVIANPVIVSEEVCKDDCLIRRTLE
Sbjct: 1  MSKLAALFTIAALVSMSLMLPSSEARPITTLTATSAVIANPVIVSEEVCKDDCLIRRTLE 60

Query: 61 AHTDYIYSGDTKP 74
          AHTDYIYSGDTKP
Sbjct: 61 AHTDYIYSGDTKP 73

[Close]

BLAST of CmoCh05G001330.1 vs. NCBI nr
Match: XP_023546620.1 (phytosulfokines-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 99.8 bits (247), Expect = 1.1e-17
Identity = 63/82 (76.83%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 1  MSKLAALFTIAALVSMSLMLPSSEARPITTLTATSAVIANPVIVSEEV-----C----KD 60
          MSKLAALFTIAAL++M     SSEARPI TLTATSAVIANPV V+EEV     C    KD
Sbjct: 1  MSKLAALFTIAALLTM-----SSEARPIATLTATSAVIANPV-VAEEVRKDGPCEGREKD 60

Query: 61 DCLIRRTLEAHTDYIYSGDTKP 74
          DCLIRRTLEAHTDYIYSGDTKP
Sbjct: 61 DCLIRRTLEAHTDYIYSGDTKP 76

[Close]

BLAST of CmoCh05G001330.1 vs. NCBI nr
Match: XP_022131649.1 (uncharacterized protein LOC111004777 [Momordica charantia])

HSP 1 Score: 76.3 bits (186), Expect = 1.3e-10
Identity = 51/82 (62.20%), Postives = 61/82 (74.39%), Query Frame = 0


Query: 1   MSK-LAALFTIAALVSMSLMLPSSEARPITTLTATSAVIANPVI---VSEEVCKD----- 60
           MSK LAALF IAAL++MS++L SS+ARPITT +A S  IA+P     V E+ C +     
Sbjct: 22  MSKQLAALFAIAALLTMSVLL-SSQARPITTFSANSVEIAHPDSKDRVHEDGCDERAEDQ 81

Query: 61  DCLIRRTLEAHTDYIYSGDTKP 74
           DCL RRTLEAHTDYIYSG+TKP
Sbjct: 82  DCLNRRTLEAHTDYIYSGETKP 102

[Close]

BLAST of CmoCh05G001330.1 vs. NCBI nr
Match: KAG6585714.1 (Phytosulfokine, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.2 bits (165), Expect = 3.4e-08
Identity = 46/82 (56.10%), Postives = 58/82 (70.73%), Query Frame = 0


Query: 1  MSKLAALFTIAALVSMSLMLPSSEARPITTLTATSA---VIANPVIVS---EEVCK---- 60
          MSKL ALF++ ALV+MSL L SSEARPI T TATS     IA+ V+     ++VC+    
Sbjct: 1  MSKLVALFSVVALVTMSL-LSSSEARPIATSTATSLDLNHIAHQVVSEKGHDDVCEGGET 60

Query: 61 DDCLIRRTLEAHTDYIYSGDTK 73
           +CL +RT+EAHTDYIY+ DTK
Sbjct: 61 KECLAKRTVEAHTDYIYTDDTK 81

[Close]

BLAST of CmoCh05G001330.1 vs. NCBI nr
Match: XP_022132249.1 (phytosulfokines-like [Momordica charantia])

HSP 1 Score: 65.5 bits (158), Expect = 2.2e-07
Identity = 45/81 (55.56%), Postives = 53/81 (65.43%), Query Frame = 0


Query: 1  MSKLAALFTIAALVSMSLMLPSSEARPITTLTATSAVIANPV---IVSEEVC-----KDD 60
          M+KLAALFTI ALV    +L SSEARP     ATS  I NPV    V+ ++C      +D
Sbjct: 1  MTKLAALFTIVALVLTMSLLTSSEARP---TIATSVKIVNPVPEETVNGDICDERNPDED 60

Query: 61 CLIRRTLEAHTDYIYSGDTKP 74
          CL RRTL AHTDYIY+ +TKP
Sbjct: 61 CLFRRTLTAHTDYIYT-ETKP 77

The following BLAST results are available for this feature:

BLAST of CmoCh05G001330.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FS10	2.2e-05	42.11	Phytosulfokines OS=Asparagus officinalis OX=4686 GN=PSK PE=1 SV=1	[more]

BLAST of CmoCh05G001330.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BQV2	6.1e-11	62.20	Phytosulfokine-beta OS=Momordica charantia OX=3673 GN=LOC111004777 PE=3 SV=1	[more]
A0A6J1BSJ0	1.1e-07	55.56	Phytosulfokine-beta OS=Momordica charantia OX=3673 GN=LOC111005149 PE=3 SV=1	[more]
A0A5A7V550	9.4e-04	48.24	Phytosulfokine-beta OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G...	[more]

BLAST of CmoCh05G001330.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6598323.1	6.0e-29	100.00	Phytosulfokine, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029293.1 Ph...	[more]
XP_023546620.1	1.1e-17	76.83	phytosulfokines-like [Cucurbita pepo subsp. pepo]	[more]
XP_022131649.1	1.3e-10	62.20	uncharacterized protein LOC111004777 [Momordica charantia]	[more]
KAG6585714.1	3.4e-08	56.10	Phytosulfokine, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022132249.1	2.2e-07	55.56	phytosulfokines-like [Momordica charantia]	[more]

BLAST of CmoCh05G001330.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009438	Phytosulfokine	PFAM	PF06404	PSK	coord: 48..70 e-value: 5.8E-7 score: 30.4

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh05G001330	CmoCh05G001330	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh05G001330.1:exon:5142	CmoCh05G001330.1:exon:5142	exon
CmoCh05G001330.1:exon:5143	CmoCh05G001330.1:exon:5143	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh05G001330.1:five_prime_utr	CmoCh05G001330.1:five_prime_utr	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh05G001330.1:cds	CmoCh05G001330.1:cds	CDS
CmoCh05G001330.1:cds	CmoCh05G001330.1:cds_2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh05G001330.1:three_prime_utr	CmoCh05G001330.1:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh05G001330.1	CmoCh05G001330.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008283	cell population proliferation
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0016020	membrane
molecular_function	GO:0008083	growth factor activity