CmoCh04G029510.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh04G029510.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionplant UBX domain-containing protein 10-like
LocationCmo_Chr04: 20889029 .. 20891765 (-)
Sequence length503
RNA-Seq ExpressionCmoCh04G029510.1
SyntenyCmoCh04G029510.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTTCGCTGCCCAAACCAAACGCTACATTGTTACCCGGCAATCGGAGGAAGAGAGAGCAGAATTGAAAGAAGTTTCTCGCCTCGTTTCGGTGATGAAAAATAGAGGTGAAGTACAGTGATGATGACTCTGCTCTCTCTTCCTCTGATTGCCTTCAAATTTCGTTTCAGCCTTTTAGTTTATGCGTACTTTGATCGCTGTTTTGAGTTTGAAATTTTAAGGGTACAGTAATGATTCTGCTCGCCCTTCCTCCGATTGCCTTAAAATTTCGTTCTCAGCCTTTTTGTTTATGCGTAGGTTGGTCGCTGTTTTGGGTTTGAAATTTTAAGGGTACTGTGACTATTCTGCTCTCTCTTCCTCCGATTGCCTGAAAATTTCGTTTTCAGCCTTTTAGTTTATGCGTAGTTTGGTCGCTGTTTTAGGGTTGAAATTTGAAGGCTACAGTGTTGATTCTGCTCTCTCTTCCTCCGATTGCCTTAAAATTTCGTTCTCAGCCTTTTACGGGTAGTTTGGTCGCCGGTCTGAGTTTGAAATTTTAAGGAGTGATGATTCTGCTATCTCTTCCTCCGACTGCCATAAAATTTCGTTTTCGGCCTTTTAGTTTTACGGGTAATTTGGTCGCCGGTCTGAGTTTGAAATTTCAAGGGTATAGTGATGCTTCTGCTCGTCTTCCTCCGATTGCCTTAAAATTTCATTTCAGCCTTTTAATTTTATGCGTAGTTTGGTCGCTGTTCTGGGTTTGAAATTCATATTAGGAATTCGCTGGAGAACTTCAGAGGTTATTCTTATTTAGGGGTACAAAAATAATTCAAGTGAACAAAATAAAATGATCCAGGGGTCAAAAGAAGCTACAAAGGATATAAGAAGGCGTTCCAATTAATGCAAATATCCTGTAACGAATATCGAACAAATGACTTTGAGAGAGAACACCAAGTTTAGACGAGCTTATTCGATTCGTTGATTTCTTAAAATCTATAATTTTGATCAAATAGCTTTCACTGCATTAATCCATAGTTCAATTAGGAAACACACTGAATATTGAAAACCAAGAACCACTCTTCTAGTCTTCTATCTTAATCTCAAAGATGAAAAAGAGCTCTTTCAGTCTTCTAGCTCGTCCAACAATAAGTATAAAATTTTTTAGCTTGTTTTTGGTAGAACTTGAATTATATATTTACTATTTTATCAATAAATTTTTTAGCTTGTTTTTGGTAGAACTTGAATTATATATTTACTATTTTATCAATGCCAAGGGAGCTTTGAGAGCTCCCACCTCTCCTCATTGCTCAACCAAGCTACAATTCAGCAAAGCGGCCTTAATATTACCCTCTAAAAAACTCCCACAAACAATCATAACTAACATCATGTATACACTTTGGTGATTTGGGGTCTAGTTTTCTGGCACTAATTTTCTTTAGGCTGTTATATGGCATGATTACATTCTCTGATTAAGTTATCAATTGTGACATATATGTAGATTCTTCCCTATACAAACGTTTATTGATTTGAACAACATTCAGTTTTCAGTGTTTTATATTTTCAATGTGTGAATTAACCCTGCAAAGTGAAGGGCGAATTTTGTTATTTTCTAATAAGTTTACGAGTTAATTTTTTTTGACATTTTCTCTACATTACATTTTTCTTAAAGGTAGAAGAAAGAGTTTGATCAGCTGAAGAGGAAAAGGCAGTCTCAGAAAGAATTTGATGCAGAGTCTAAAAAGATGTAAGCTTCTGATGGGAGTGAATTTAAAATGTGGAAATTTCAAGAAAGTATGTTTTCTATGGTTTCTTTAGAAGTTTTTGTCTTGCTAGCTTGCTTCATTGGAAATTATTATATGGGTCGCCAGTCACCTGACAAGGTGCAAAAATGTTGTAAATGGGATTTGACAATTGAATAGCACTATAAAATTATTCGTGTTGGATTATTTTATGCATAAGCAATAAAATAAGTTAATTCTTGATGCAAAATTTTGAAAATTGATATTTGTATCTGCATTCACCAGATCACCCATTTACGTCCTCTTTCCGTGAGGAGACACTGCGTTCAGAGGTAGTAGTGCAGTTTCTTGATGCTAATTTCATCTGTTGGGGAGCACTTGCAAACAGAGGAGATGGTCTGCAGATGGCTACAACATTGGGAGCTACCAATTTCCCCTTCTGTGCTGTAATTGCTCCAGCTCCAGGCGAAAGCCTAACAGTCCTGCAACAGGTTGGTTTGGCTTGAGTTCCAAATTTTCTATTTTAATTAAACTCTTTTGCAGATCCCCCTCTCATATTTCTGAGGATGTCTATAGGGCGTCAGTTGATTGGCTTAATAAACGTTCTCTCGAGGCACTCAACTCTTTCGCATTATGGTCTTCAGATAGCATTCTTGCTGACTTTGCGACTCAACAAGCTAGTGCCAAATGCTCTAAAAAGGGAGACAACATGCTTCCTCAAAATCTCAGATATCAGTGGTTTGTTTAAGTTTATTAACTAGTTTTCAACCTTGTTTGTTTTCTGGAAATTTGTAAAGCAAAAATGAACTGCAGGGACTTCAAGGATGATCTAAAAGAGGCTGAAAAGCCTAGGAAATCTATTTCTTTGACGAAATTAGAGTGTTAAAGCCATCTTCGGCAAGAAATGGAATCCCACATAGATTGATACTACAATACGTAATAATGGTAGTAATAATACTACAATTTTCTTTATGATTCAAGAATTAATATATTACTGCATAACAGGTTGCCCTATTTGTAG

mRNA sequence

TGTTCGCTGCCCAAACCAAACGCTACATTGTTACCCGGCAATCGGAGGAAGAGAGAGCAGAATTGAAAGAAGTTTCTCGCCTCGTTTCGGTGATGAAAAATAGAGGTAGAAGAAAGAGTTTGATCAGCTGAAGAGGAAAAGGCAGTCTCAGAAAGAATTTGATGCAGAGTCTAAAAAGATATCACCCATTTACGTCCTCTTTCCGTGAGGAGACACTGCGTTCAGAGGTAGTAGTGCAGTTTCTTGATGCTAATTTCATCTGTTGGGGAGCACTTGCAAACAGAGGAGATGGTCTGCAGATGGCTACAACATTGGGAGCTACCAATTTCCCCTTCTGTGCTGTAATTGCTCCAGCTCCAGGCGAAAGCCTAACAGTCCTGCAACAGGGCGTCAATAGCATTCTTGCTGACTTTGCGACTCAACAAGCTAGTGCCAAATGCTCTAAAAAGGGAGACAACATGCTTCCTCAAAATCTCAGATATCAGTGGTTGCCCTATTTGTAG

Coding sequence (CDS)

ATGCAGAGTCTAAAAAGATATCACCCATTTACGTCCTCTTTCCGTGAGGAGACACTGCGTTCAGAGGTAGTAGTGCAGTTTCTTGATGCTAATTTCATCTGTTGGGGAGCACTTGCAAACAGAGGAGATGGTCTGCAGATGGCTACAACATTGGGAGCTACCAATTTCCCCTTCTGTGCTGTAATTGCTCCAGCTCCAGGCGAAAGCCTAACAGTCCTGCAACAGGGCGTCAATAGCATTCTTGCTGACTTTGCGACTCAACAAGCTAGTGCCAAATGCTCTAAAAAGGGAGACAACATGCTTCCTCAAAATCTCAGATATCAGTGGTTGCCCTATTTGTAG

Protein sequence

MQSLKRYHPFTSSFREETLRSEVVVQFLDANFICWGALANRGDGLQMATTLGATNFPFCAVIAPAPGESLTVLQQGVNSILADFATQQASAKCSKKGDNMLPQNLRYQWLPYL
Homology
[Close]
BLAST of CmoCh04G029510.1 vs. ExPASy Swiss-Prot
Match: Q9M0N1 (Plant UBX domain-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=PUX10 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.5e-10
Identity = 29/68 (42.65%), Postives = 42/68 (61.76%), Query Frame = 0 

Query: 8   HPFTSSFREETLRSEVVVQFLDANFICWGALANRGDGLQMATTLGATNFPFCAVIAPAPG 67
           HP T  F   TL +E VV F++ NF+ WG      +G +M+ +L A+ FPFCAV+ PA  
Sbjct: 213 HPDTPVFCGGTLCNEAVVAFVNENFVSWGGSIRSSEGFKMSNSLKASRFPFCAVVMPAAN 272

Query: 68  ESLTVLQQ 76
           + + +LQQ
Sbjct: 273 QRIALLQQ 280

[Close]
BLAST of CmoCh04G029510.1 vs. ExPASy TrEMBL
Match: A0A6J1HKR4 (plant UBX domain-containing protein 10-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111463895 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 9.4e-35
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1  MQSLKRYHPFTSSFREETLRSEVVVQFLDANFICWGALANRGDGLQMATTLGATNFPFCA 60
          MQSLKRYHPFTSSFREETLRSEVVVQFLDANFICWGALANRGDGLQMATTLGATNFPFCA
Sbjct: 1  MQSLKRYHPFTSSFREETLRSEVVVQFLDANFICWGALANRGDGLQMATTLGATNFPFCA 60

Query: 61 VIAPAPGESLTVLQQ 76
          VIAPAPGESLTVLQQ
Sbjct: 61 VIAPAPGESLTVLQQ 75

[Close]
BLAST of CmoCh04G029510.1 vs. ExPASy TrEMBL
Match: A0A6J1C5V5 (plant UBX domain-containing protein 10-like OS=Momordica charantia OX=3673 GN=LOC111008697 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.1e-27
Identity = 62/68 (91.18%), Postives = 66/68 (97.06%), Query Frame = 0 

Query: 8   HPFTSSFREETLRSEVVVQFLDANFICWGALANRGDGLQMATTLGATNFPFCAVIAPAPG 67
           HPFT SF EETLRSE+VVQFLDANFICWGALANRG+GLQMATTLGAT+FPFCAVIAPAPG
Sbjct: 109 HPFTPSFCEETLRSELVVQFLDANFICWGALANRGEGLQMATTLGATSFPFCAVIAPAPG 168

Query: 68  ESLTVLQQ 76
           ES+TVLQQ
Sbjct: 169 ESITVLQQ 176

[Close]
BLAST of CmoCh04G029510.1 vs. ExPASy TrEMBL
Match: A0A6J1KED3 (plant UBX domain-containing protein 10-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111495055 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.6e-26
Identity = 62/68 (91.18%), Postives = 64/68 (94.12%), Query Frame = 0 

Query: 8   HPFTSSFREETLRSEVVVQFLDANFICWGALANRGDGLQMATTLGATNFPFCAVIAPAPG 67
           HPFT SF EETLRSE+VVQFLDANFI WGALANRGDGLQMATTLGATNFPFCAVIAPA G
Sbjct: 112 HPFTPSFCEETLRSELVVQFLDANFISWGALANRGDGLQMATTLGATNFPFCAVIAPARG 171

Query: 68  ESLTVLQQ 76
           ES+TVLQQ
Sbjct: 172 ESITVLQQ 179

[Close]
BLAST of CmoCh04G029510.1 vs. ExPASy TrEMBL
Match: A0A6J1KGJ0 (plant UBX domain-containing protein 10-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111495055 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.6e-26
Identity = 62/68 (91.18%), Postives = 64/68 (94.12%), Query Frame = 0 

Query: 8   HPFTSSFREETLRSEVVVQFLDANFICWGALANRGDGLQMATTLGATNFPFCAVIAPAPG 67
           HPFT SF EETLRSE+VVQFLDANFI WGALANRGDGLQMATTLGATNFPFCAVIAPA G
Sbjct: 112 HPFTPSFCEETLRSELVVQFLDANFISWGALANRGDGLQMATTLGATNFPFCAVIAPARG 171

Query: 68  ESLTVLQQ 76
           ES+TVLQQ
Sbjct: 172 ESITVLQQ 179

[Close]
BLAST of CmoCh04G029510.1 vs. ExPASy TrEMBL
Match: A0A0A0LR96 (UBX domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G046250 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.6e-26
Identity = 60/68 (88.24%), Postives = 65/68 (95.59%), Query Frame = 0 

Query: 8   HPFTSSFREETLRSEVVVQFLDANFICWGALANRGDGLQMATTLGATNFPFCAVIAPAPG 67
           HPFT SF EETL SE+VVQFLDANFICWGALA+RG+GLQMATTLGAT+FPFCAVIAPAPG
Sbjct: 111 HPFTPSFCEETLCSELVVQFLDANFICWGALASRGEGLQMATTLGATSFPFCAVIAPAPG 170

Query: 68  ESLTVLQQ 76
           ES+TVLQQ
Sbjct: 171 ESITVLQQ 178

[Close]
BLAST of CmoCh04G029510.1 vs. NCBI nr
Match: XP_022963629.1 (plant UBX domain-containing protein 10-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 156.0 bits (393), Expect = 1.9e-34
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1  MQSLKRYHPFTSSFREETLRSEVVVQFLDANFICWGALANRGDGLQMATTLGATNFPFCA 60
          MQSLKRYHPFTSSFREETLRSEVVVQFLDANFICWGALANRGDGLQMATTLGATNFPFCA
Sbjct: 1  MQSLKRYHPFTSSFREETLRSEVVVQFLDANFICWGALANRGDGLQMATTLGATNFPFCA 60

Query: 61 VIAPAPGESLTVLQQ 76
          VIAPAPGESLTVLQQ
Sbjct: 61 VIAPAPGESLTVLQQ 75

[Close]
BLAST of CmoCh04G029510.1 vs. NCBI nr
Match: XP_022137155.1 (plant UBX domain-containing protein 10-like [Momordica charantia])

HSP 1 Score: 132.5 bits (332), Expect = 2.3e-27
Identity = 62/68 (91.18%), Postives = 66/68 (97.06%), Query Frame = 0 

Query: 8   HPFTSSFREETLRSEVVVQFLDANFICWGALANRGDGLQMATTLGATNFPFCAVIAPAPG 67
           HPFT SF EETLRSE+VVQFLDANFICWGALANRG+GLQMATTLGAT+FPFCAVIAPAPG
Sbjct: 109 HPFTPSFCEETLRSELVVQFLDANFICWGALANRGEGLQMATTLGATSFPFCAVIAPAPG 168

Query: 68  ESLTVLQQ 76
           ES+TVLQQ
Sbjct: 169 ESITVLQQ 176

[Close]
BLAST of CmoCh04G029510.1 vs. NCBI nr
Match: XP_023000692.1 (plant UBX domain-containing protein 10-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 128.6 bits (322), Expect = 3.3e-26
Identity = 62/68 (91.18%), Postives = 64/68 (94.12%), Query Frame = 0 

Query: 8   HPFTSSFREETLRSEVVVQFLDANFICWGALANRGDGLQMATTLGATNFPFCAVIAPAPG 67
           HPFT SF EETLRSE+VVQFLDANFI WGALANRGDGLQMATTLGATNFPFCAVIAPA G
Sbjct: 112 HPFTPSFCEETLRSELVVQFLDANFISWGALANRGDGLQMATTLGATNFPFCAVIAPARG 171

Query: 68  ESLTVLQQ 76
           ES+TVLQQ
Sbjct: 172 ESITVLQQ 179

[Close]
BLAST of CmoCh04G029510.1 vs. NCBI nr
Match: XP_023000691.1 (plant UBX domain-containing protein 10-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 128.6 bits (322), Expect = 3.3e-26
Identity = 62/68 (91.18%), Postives = 64/68 (94.12%), Query Frame = 0 

Query: 8   HPFTSSFREETLRSEVVVQFLDANFICWGALANRGDGLQMATTLGATNFPFCAVIAPAPG 67
           HPFT SF EETLRSE+VVQFLDANFI WGALANRGDGLQMATTLGATNFPFCAVIAPA G
Sbjct: 112 HPFTPSFCEETLRSELVVQFLDANFISWGALANRGDGLQMATTLGATNFPFCAVIAPARG 171

Query: 68  ESLTVLQQ 76
           ES+TVLQQ
Sbjct: 172 ESITVLQQ 179

[Close]
BLAST of CmoCh04G029510.1 vs. NCBI nr
Match: XP_022923841.1 (plant UBX domain-containing protein 10-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 127.5 bits (319), Expect = 7.4e-26
Identity = 61/68 (89.71%), Postives = 64/68 (94.12%), Query Frame = 0 

Query: 8   HPFTSSFREETLRSEVVVQFLDANFICWGALANRGDGLQMATTLGATNFPFCAVIAPAPG 67
           HPFT SF EETLRSE+VVQFLDANFI WGALANRGDGLQMATTLGATN+PFCAVIAPA G
Sbjct: 112 HPFTPSFCEETLRSELVVQFLDANFISWGALANRGDGLQMATTLGATNYPFCAVIAPARG 171

Query: 68  ESLTVLQQ 76
           ES+TVLQQ
Sbjct: 172 ESITVLQQ 179

[Close]
BLAST of CmoCh04G029510.1 vs. TAIR 10
Match: AT4G10790.1 (UBX domain-containing protein )

HSP 1 Score: 65.9 bits (159), Expect = 2.5e-11
Identity = 29/68 (42.65%), Postives = 42/68 (61.76%), Query Frame = 0 

Query: 8   HPFTSSFREETLRSEVVVQFLDANFICWGALANRGDGLQMATTLGATNFPFCAVIAPAPG 67
           HP T  F   TL +E VV F++ NF+ WG      +G +M+ +L A+ FPFCAV+ PA  
Sbjct: 213 HPDTPVFCGGTLCNEAVVAFVNENFVSWGGSIRSSEGFKMSNSLKASRFPFCAVVMPAAN 272

Query: 68  ESLTVLQQ 76
           + + +LQQ
Sbjct: 273 QRIALLQQ 280

The following BLAST results are available for this feature:
BLAST of CmoCh04G029510.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9M0N13.5e-1042.65Plant UBX domain-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=PUX10 ... [more]
BLAST of CmoCh04G029510.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HKR49.4e-35100.00plant UBX domain-containing protein 10-like isoform X2 OS=Cucurbita moschata OX=... [more]
A0A6J1C5V51.1e-2791.18plant UBX domain-containing protein 10-like OS=Momordica charantia OX=3673 GN=LO... [more]
A0A6J1KED31.6e-2691.18plant UBX domain-containing protein 10-like isoform X2 OS=Cucurbita maxima OX=36... [more]
A0A6J1KGJ01.6e-2691.18plant UBX domain-containing protein 10-like isoform X1 OS=Cucurbita maxima OX=36... [more]
A0A0A0LR963.6e-2688.24UBX domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G046250 PE=4 SV... [more]
BLAST of CmoCh04G029510.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022963629.11.9e-34100.00plant UBX domain-containing protein 10-like isoform X2 [Cucurbita moschata][more]
XP_022137155.12.3e-2791.18plant UBX domain-containing protein 10-like [Momordica charantia][more]
XP_023000692.13.3e-2691.18plant UBX domain-containing protein 10-like isoform X2 [Cucurbita maxima][more]
XP_023000691.13.3e-2691.18plant UBX domain-containing protein 10-like isoform X1 [Cucurbita maxima][more]
XP_022923841.17.4e-2689.71plant UBX domain-containing protein 10-like isoform X2 [Cucurbita moschata][more]
BLAST of CmoCh04G029510.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G10790.12.5e-1142.65UBX domain-containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.30.10Glutaredoxincoord: 5..95
e-value: 4.2E-12
score: 48.0
NoneNo IPR availablePANTHERPTHR23322:SF71UBIQUITIN-ASSOCIATED (UBA) PROTEIN-RELATEDcoord: 7..76
NoneNo IPR availablePANTHERPTHR23322FAS-ASSOCIATED PROTEINcoord: 7..76
IPR036249Thioredoxin-like superfamilySUPERFAMILY52833Thioredoxin-likecoord: 8..71

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh04G029510CmoCh04G029510gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh04G029510.1:exon:5416CmoCh04G029510.1:exon:5416exon
CmoCh04G029510.1:exon:5415CmoCh04G029510.1:exon:5415exon
CmoCh04G029510.1:exon:5414CmoCh04G029510.1:exon:5414exon
CmoCh04G029510.1:exon:5413CmoCh04G029510.1:exon:5413exon
CmoCh04G029510.1:exon:5412CmoCh04G029510.1:exon:5412exon
CmoCh04G029510.1:exon:5411CmoCh04G029510.1:exon:5411exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh04G029510.1:cdsCmoCh04G029510.1:cds_5CDS
CmoCh04G029510.1:cdsCmoCh04G029510.1:cds_4CDS
CmoCh04G029510.1:cdsCmoCh04G029510.1:cds_3CDS
CmoCh04G029510.1:cdsCmoCh04G029510.1:cds_2CDS
CmoCh04G029510.1:cdsCmoCh04G029510.1:cdsCDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh04G029510.1:five_prime_utrCmoCh04G029510.1:five_prime_utr_2five_prime_UTR
CmoCh04G029510.1:five_prime_utrCmoCh04G029510.1:five_prime_utrfive_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh04G029510.1CmoCh04G029510.1-proteinpolypeptide