CmoCh04G025720.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G025720.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	light-harvesting complex-like protein OHP2, chloroplastic
Location	Cmo_Chr04: 18826031 .. 18828196 (-)
Sequence length	1014
RNA-Seq Expression	CmoCh04G025720.1
Synteny	CmoCh04G025720.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCTTGTATTCTTCTGAAACTTGGCCACATCGTATCCACACCAAACACATCCACTCGATTTTGACTTCAATTCCTCTAATCCGAATCCATTTCAGTTCCACAAGAATCTGATAGAGAAATTTCAGAGATACAAGGCGAAATGTCGGGGGCCTGTTCATTCCCCTTTGCCAAAATCAAAATCCCCACCGTTTCCTCGTCGTCGGCGGCCGTTTCTCCGTCGGCTTCGGCTGCCAGTTCCACTTCTTCATCGTCCGCTCACAGTTCCATCAGATTCTCCTCCTCCAAACCTTTTGTCTTCACCATTCGGAGCTCTCAGACCGACGGCCCTATCAGGAGACCGGCGGCTCCTTCTCTGAGAGAGCCGTCGCCGCCTTCGCCGCCGCCTCCTCTCAAGCCGCCTCCTTCTTCGGCGACGGCTCCTGTTGCTCAGCCGTCGGGGAAGGCGTATGTTGCAAAACAGGATAATACGATCACTTTAGAGTTTCAGAGGCAGAAGGCTAAGGAGCTTCAGGAGTATTTTAAGCAGAAGAAGCTTGATGAGGCTGATCAGGGACCGTTCTTTGGCTTCATCGGGAAGAATGAAATTTCTAATGGCAGGTGATTTCATTTCCTCTTTTCTCCTCCGATTTTATCGATGATTATTAAATTTTGAAGCTGGATATTCTCCCTAGTGAACTCCATTATAAGTTTTGATTATGTTCTTGTGCCTAAACTAGTGAACTCCATTCCTTTTAGCACAAGTACAAGAATTCTTTCTTTATCTTCATGGATAACCAATCCATTTCCCATGTACTTTGGAGGATCGTTTGCACGACTGCTTCTGTTCCAGAATCATATCCACTGTGGTTTGTGCTGATTTTATTCAAAACCTGCATTCAATTTAGATTAAGAATGTATTTGATTTAGATGTTCGCGACTAGAAGTCAATCCCTATGATCGAAGTTATATTCTCTATAACATAGGTCTTATCTAGGTCTTATCTACGCAAGGAATGGAGAACATACGAAAGCTTTGAAGTATTATTTTCGGCCACTAGAACGAAACCCGTTCTCACCACAATCTACGGCTGTGATCTTTAATGACCTGTAGCACTTCGTAGAAGTAGAAATATGAAGAAATAGGTATGTCTAGATACTTTATTCTAATTGATAGAAGAAGCACAATAAAGATCAAATACTGTAACAGCCCAATCCTACCTAGCAAATATTGTCCTCTTTGAGCTTTCCCTTAAGATTTTTAGAACGCATCTACTAGGGAGAGGTTTCTACACCCTTATAAAGGATACTTTGTTCTACTCTCCAACCGATGTGGGATCCCATAATCCACCCCTTTTAGGGCCCTGCCTCCTCGTTAGCTCTCGTTCCACTCTCCAATCGATGTGGGATCTCACAATCCACCCCTTTCAGGGCCCTGCATCCTCGTTAGCCCGCGTTCCCCTCTCCAATCAACGTGGGATCTCACAATCCACCCCCTTCAGAGCCCTGCGTCCTCGTTAGCCCTCGTTTCTCTCTCCGATCAACGTGGGATCTCACAGATATCCATGTGTTTTGTGTTGATTTTATGGAAATGGAATGTATTTGATTTAGATGTTGCTCCTGAAGATGTGAATCTGACTGAATTGAACTGGTTCTTTGTGTACCTTCATTCCATATTTGACTGAATCTCATAGTTGCTAGTAGCAATCAGCTGTTCATTTTACTCGTTAAGGGTGTCATCATTACTCTTACTGAGACGTTTTTCCCCCAACAGGTGGGCAATGTTTGGTTTTGCTGTTGGATTGCTGACAGAGTATGCAACTGGTTCAAACTTTGTTGATCAAGTAAAGATCCTCCTTTCAAATTTTGGGATAGTTGATCTCGATTGACACGATGAACAAGGTCCATGTTTAATTTTTAATGTATCTACATCTTGTAATTCATTTCATAGTGTTCTTGAGATTCGTTGTTTGATACACCAATTGCCATTCAAGTTTGTGCTCCTTGCAATGCTTACTGTTCTTCTGTTTATATATAAAGTTCTTTCTTAGTTATTTATCGGAGAGATTATAATCCATCTCGAAAATATGATAGATTGTCTTATTTTTGTCGATAATAATATCGATAAATGTTGTATTTCTAGTTGCCTACCTTGAAATTTAGATGCACGGATCAAAATGTGATGCAGTGG

mRNA sequence

GGCTTGTATTCTTCTGAAACTTGGCCACATCGTATCCACACCAAACACATCCACTCGATTTTGACTTCAATTCCTCTAATCCGAATCCATTTCAGTTCCACAAGAATCTGATAGAGAAATTTCAGAGATACAAGGCGAAATGTCGGGGGCCTGTTCATTCCCCTTTGCCAAAATCAAAATCCCCACCGTTTCCTCGTCGTCGGCGGCCGTTTCTCCGTCGGCTTCGGCTGCCAGTTCCACTTCTTCATCGTCCGCTCACAGTTCCATCAGATTCTCCTCCTCCAAACCTTTTGTCTTCACCATTCGGAGCTCTCAGACCGACGGCCCTATCAGGAGACCGGCGGCTCCTTCTCTGAGAGAGCCGTCGCCGCCTTCGCCGCCGCCTCCTCTCAAGCCGCCTCCTTCTTCGGCGACGGCTCCTGTTGCTCAGCCGTCGGGGAAGGCGTATGTTGCAAAACAGGATAATACGATCACTTTAGAGTTTCAGAGGCAGAAGGCTAAGGAGCTTCAGGAGTATTTTAAGCAGAAGAAGCTTGATGAGGCTGATCAGGGACCGTTCTTTGGCTTCATCGGGAAGAATGAAATTTCTAATGGCAGGTGGGCAATGTTTGGTTTTGCTGTTGGATTGCTGACAGAGTATGCAACTGGTTCAAACTTTGTTGATCAAGTAAAGATCCTCCTTTCAAATTTTGGGATAGTTGATCTCGATTGACACGATGAACAAGGTCCATGTTTAATTTTTAATGTATCTACATCTTGTAATTCATTTCATAGTGTTCTTGAGATTCGTTGTTTGATACACCAATTGCCATTCAAGTTTGTGCTCCTTGCAATGCTTACTGTTCTTCTGTTTATATATAAAGTTCTTTCTTAGTTATTTATCGGAGAGATTATAATCCATCTCGAAAATATGATAGATTGTCTTATTTTTGTCGATAATAATATCGATAAATGTTGTATTTCTAGTTGCCTACCTTGAAATTTAGATGCACGGATCAAAATGTGATGCAGTGG

Coding sequence (CDS)

ATGTCGGGGGCCTGTTCATTCCCCTTTGCCAAAATCAAAATCCCCACCGTTTCCTCGTCGTCGGCGGCCGTTTCTCCGTCGGCTTCGGCTGCCAGTTCCACTTCTTCATCGTCCGCTCACAGTTCCATCAGATTCTCCTCCTCCAAACCTTTTGTCTTCACCATTCGGAGCTCTCAGACCGACGGCCCTATCAGGAGACCGGCGGCTCCTTCTCTGAGAGAGCCGTCGCCGCCTTCGCCGCCGCCTCCTCTCAAGCCGCCTCCTTCTTCGGCGACGGCTCCTGTTGCTCAGCCGTCGGGGAAGGCGTATGTTGCAAAACAGGATAATACGATCACTTTAGAGTTTCAGAGGCAGAAGGCTAAGGAGCTTCAGGAGTATTTTAAGCAGAAGAAGCTTGATGAGGCTGATCAGGGACCGTTCTTTGGCTTCATCGGGAAGAATGAAATTTCTAATGGCAGGTGGGCAATGTTTGGTTTTGCTGTTGGATTGCTGACAGAGTATGCAACTGGTTCAAACTTTGTTGATCAAGTAAAGATCCTCCTTTCAAATTTTGGGATAGTTGATCTCGATTGA

Protein sequence

MSGACSFPFAKIKIPTVSSSSAAVSPSASAASSTSSSSAHSSIRFSSSKPFVFTIRSSQTDGPIRRPAAPSLREPSPPSPPPPLKPPPSSATAPVAQPSGKAYVAKQDNTITLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILLSNFGIVDLD

Homology

[Close]

BLAST of CmoCh04G025720.1 vs. ExPASy Swiss-Prot
Match: Q9FEC1 (Light-harvesting complex-like protein OHP2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=OHP2 PE=1 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.0e-43
Identity = 110/164 (67.07%), Postives = 126/164 (76.83%), Query Frame = 0


Query: 31  ASSTSSSSAHSSIRFS-SSKPFVFTIRSSQTDGPIRRPAA-PSLREPSPPSPP--PPLKP 90
           +SS+SSS+A SS RFS ++KP VF IR SQT+GP+RRP+A P+LREP  P PP  P   P
Sbjct: 16  SSSSSSSTASSSFRFSTTTKPCVFIIRCSQTEGPLRRPSAPPTLREPQKPVPPSQPSSSP 75

Query: 91  PPSSATAPVAQPSGKAYVAKQDNTITLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGK 150
           PPS        P  KA      +  T+EFQRQKAKELQEYFKQKKL+ A QGPFFGF  K
Sbjct: 76  PPS-------PPPQKAVAVDGKSVTTVEFQRQKAKELQEYFKQKKLEAAGQGPFFGFQPK 135

Query: 151 NEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILLSNFGIVDLD 191
           NEISNGRWAMFGFAVG+LTEYATGS+ VDQVKILLSNFGI+DL+
Sbjct: 136 NEISNGRWAMFGFAVGMLTEYATGSDLVDQVKILLSNFGILDLE 172

[Close]

BLAST of CmoCh04G025720.1 vs. ExPASy TrEMBL
Match: A0A6J1HG91 (light-harvesting complex-like protein OHP2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111464005 PE=4 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 5.3e-91
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   MSGACSFPFAKIKIPTVSSSSAAVSPSASAASSTSSSSAHSSIRFSSSKPFVFTIRSSQT 60
           MSGACSFPFAKIKIPTVSSSSAAVSPSASAASSTSSSSAHSSIRFSSSKPFVFTIRSSQT
Sbjct: 1   MSGACSFPFAKIKIPTVSSSSAAVSPSASAASSTSSSSAHSSIRFSSSKPFVFTIRSSQT 60

Query: 61  DGPIRRPAAPSLREPSPPSPPPPLKPPPSSATAPVAQPSGKAYVAKQDNTITLEFQRQKA 120
           DGPIRRPAAPSLREPSPPSPPPPLKPPPSSATAPVAQPSGKAYVAKQDNTITLEFQRQKA
Sbjct: 61  DGPIRRPAAPSLREPSPPSPPPPLKPPPSSATAPVAQPSGKAYVAKQDNTITLEFQRQKA 120

Query: 121 KELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKIL 180
           KELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKIL
Sbjct: 121 KELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKIL 180

Query: 181 LSNFGIVDLD 191
           LSNFGIVDLD
Sbjct: 181 LSNFGIVDLD 190

[Close]

BLAST of CmoCh04G025720.1 vs. ExPASy TrEMBL
Match: A0A6J1JS47 (light-harvesting complex-like protein OHP2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111487322 PE=4 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 1.2e-87
Identity = 184/190 (96.84%), Postives = 186/190 (97.89%), Query Frame = 0


Query: 1   MSGACSFPFAKIKIPTVSSSSAAVSPSASAASSTSSSSAHSSIRFSSSKPFVFTIRSSQT 60
           MSGACSFPFAKIKIPTVSSSSAAVSPSASA SSTSSSSAHSSIRFSSSKPFVFTIRSSQT
Sbjct: 1   MSGACSFPFAKIKIPTVSSSSAAVSPSASAVSSTSSSSAHSSIRFSSSKPFVFTIRSSQT 60

Query: 61  DGPIRRPAAPSLREPSPPSPPPPLKPPPSSATAPVAQPSGKAYVAKQDNTITLEFQRQKA 120
           DGPIRRPAAPSLREPSPPSPPPPLKP P+SATAP +QPS KAYVAKQDNTITLEFQRQKA
Sbjct: 61  DGPIRRPAAPSLREPSPPSPPPPLKPTPTSATAPFSQPSAKAYVAKQDNTITLEFQRQKA 120

Query: 121 KELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKIL 180
           KELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKIL
Sbjct: 121 KELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKIL 180

Query: 181 LSNFGIVDLD 191
           LSNFGIVDLD
Sbjct: 181 LSNFGIVDLD 190

[Close]

BLAST of CmoCh04G025720.1 vs. ExPASy TrEMBL
Match: A0A6J1K1U3 (light-harvesting complex-like protein OHP2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111489352 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 5.0e-73
Identity = 166/194 (85.57%), Postives = 169/194 (87.11%), Query Frame = 0


Query: 1   MSGACSFPFAKIKIPTVSSSSAAVSPSASAASSTSSSSAHSSIRFSSSKPFVFTIRSSQT 60
           MSGACS PFAKIKIP  SSS A  SPSASA SS SSSSAHSSIRFSSSKPFVFTIRSSQT
Sbjct: 1   MSGACSIPFAKIKIPAASSSPATASPSASATSSASSSSAHSSIRFSSSKPFVFTIRSSQT 60

Query: 61  DGPIRRPAAPSLREPSPPSPP---PPLKP-PPSSATAPVAQPSGKAYVAKQDNTITLEFQ 120
           +GP+RRPAAPSLREPSPPSPP   PPLKP PPSS T     P   AY AK DN ITLEFQ
Sbjct: 61  EGPLRRPAAPSLREPSPPSPPSPTPPLKPTPPSSQT-----PPSPAYAAKLDNVITLEFQ 120

Query: 121 RQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQ 180
           RQKAKELQEYFKQKKLDE DQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQ
Sbjct: 121 RQKAKELQEYFKQKKLDEDDQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQ 180

Query: 181 VKILLSNFGIVDLD 191
           VKILLSNFGIVDL+
Sbjct: 181 VKILLSNFGIVDLE 189

[Close]

BLAST of CmoCh04G025720.1 vs. ExPASy TrEMBL
Match: A0A6J1FIC8 (light-harvesting complex-like protein OHP2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111445596 PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 1.1e-72
Identity = 163/193 (84.46%), Postives = 167/193 (86.53%), Query Frame = 0


Query: 1   MSGACSFPFAKIKIPTVSSSSAAVSPSASAASSTSSSSAHSSIRFSSSKPFVFTIRSSQT 60
           MSGACS PFAKIKIP  SSS A  SPSASA SS SSSSAHSSIRFSS+KPFVFTIRSSQT
Sbjct: 1   MSGACSIPFAKIKIPATSSSPATASPSASATSSASSSSAHSSIRFSSTKPFVFTIRSSQT 60

Query: 61  DGPIRRPAAPSLREPSPPSPP---PPLKPPPSSATAPVAQPSGKAYVAKQDNTITLEFQR 120
           +GP+RRPAAPSLREPSPPSPP   PPLKP P     P   P   AY AK DN ITLEFQR
Sbjct: 61  EGPLRRPAAPSLREPSPPSPPSPTPPLKPTP----PPSQTPPSPAYAAKLDNVITLEFQR 120

Query: 121 QKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQV 180
           QKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQV
Sbjct: 121 QKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQV 180

Query: 181 KILLSNFGIVDLD 191
           KILLSNFGIVDL+
Sbjct: 181 KILLSNFGIVDLE 189

[Close]

BLAST of CmoCh04G025720.1 vs. ExPASy TrEMBL
Match: A0A1S3B3J8 (proline-rich receptor-like protein kinase PERK14 OS=Cucumis melo OX=3656 GN=LOC103485601 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 4.5e-66
Identity = 155/198 (78.28%), Postives = 168/198 (84.85%), Query Frame = 0


Query: 1   MSGACSFPFAKIKIPTVSSSSA----AVSPSASAASSTSSSSA-HSSIRFSSSKPFVFTI 60
           MSGACS PFA IKIP+ SSS A    A SPSASA+SS SSSS+ HSS+RF SSKPF+FTI
Sbjct: 1   MSGACSIPFANIKIPSTSSSPAATASAASPSASASSSASSSSSLHSSLRFHSSKPFLFTI 60

Query: 61  RSSQTDGPIRRPAAPSLREPSPPSPP---PPLKPPPSSATAPVAQPSGKAYVAKQDNTIT 120
           RSSQT+GP+RRP+APSLR+PSPPSPP   PPLKP P S + P       + V KQDN IT
Sbjct: 61  RSSQTEGPLRRPSAPSLRDPSPPSPPSPTPPLKPSPPSQSPP-------SPVLKQDNVIT 120

Query: 121 LEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSN 180
           LEFQR KAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSN
Sbjct: 121 LEFQRLKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSN 180

Query: 181 FVDQVKILLSNFGIVDLD 191
           FVDQVKILLSNFGI+DL+
Sbjct: 181 FVDQVKILLSNFGIIDLE 191

[Close]

BLAST of CmoCh04G025720.1 vs. NCBI nr
Match: XP_022963822.1 (light-harvesting complex-like protein OHP2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 343.6 bits (880), Expect = 1.1e-90
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   MSGACSFPFAKIKIPTVSSSSAAVSPSASAASSTSSSSAHSSIRFSSSKPFVFTIRSSQT 60
           MSGACSFPFAKIKIPTVSSSSAAVSPSASAASSTSSSSAHSSIRFSSSKPFVFTIRSSQT
Sbjct: 1   MSGACSFPFAKIKIPTVSSSSAAVSPSASAASSTSSSSAHSSIRFSSSKPFVFTIRSSQT 60

Query: 61  DGPIRRPAAPSLREPSPPSPPPPLKPPPSSATAPVAQPSGKAYVAKQDNTITLEFQRQKA 120
           DGPIRRPAAPSLREPSPPSPPPPLKPPPSSATAPVAQPSGKAYVAKQDNTITLEFQRQKA
Sbjct: 61  DGPIRRPAAPSLREPSPPSPPPPLKPPPSSATAPVAQPSGKAYVAKQDNTITLEFQRQKA 120

Query: 121 KELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKIL 180
           KELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKIL
Sbjct: 121 KELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKIL 180

Query: 181 LSNFGIVDLD 191
           LSNFGIVDLD
Sbjct: 181 LSNFGIVDLD 190

[Close]

BLAST of CmoCh04G025720.1 vs. NCBI nr
Match: KAG7032876.1 (Light-harvesting complex-like protein OHP2, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 340.5 bits (872), Expect = 9.3e-90
Identity = 189/190 (99.47%), Postives = 189/190 (99.47%), Query Frame = 0


Query: 1   MSGACSFPFAKIKIPTVSSSSAAVSPSASAASSTSSSSAHSSIRFSSSKPFVFTIRSSQT 60
           MSGACSFPFAKIKIPTVSSSSAAVSPSASAASSTSSSSAHSSIRFSSSKPFVFTIRSSQT
Sbjct: 1   MSGACSFPFAKIKIPTVSSSSAAVSPSASAASSTSSSSAHSSIRFSSSKPFVFTIRSSQT 60

Query: 61  DGPIRRPAAPSLREPSPPSPPPPLKPPPSSATAPVAQPSGKAYVAKQDNTITLEFQRQKA 120
           DGPIRRPAAPSLREPSPPSPPPPLKPPPSSATAPVAQ SGKAYVAKQDNTITLEFQRQKA
Sbjct: 61  DGPIRRPAAPSLREPSPPSPPPPLKPPPSSATAPVAQSSGKAYVAKQDNTITLEFQRQKA 120

Query: 121 KELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKIL 180
           KELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKIL
Sbjct: 121 KELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKIL 180

Query: 181 LSNFGIVDLD 191
           LSNFGIVDLD
Sbjct: 181 LSNFGIVDLD 190

[Close]

BLAST of CmoCh04G025720.1 vs. NCBI nr
Match: XP_022990469.1 (light-harvesting complex-like protein OHP2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 332.4 bits (851), Expect = 2.5e-87
Identity = 184/190 (96.84%), Postives = 186/190 (97.89%), Query Frame = 0


Query: 1   MSGACSFPFAKIKIPTVSSSSAAVSPSASAASSTSSSSAHSSIRFSSSKPFVFTIRSSQT 60
           MSGACSFPFAKIKIPTVSSSSAAVSPSASA SSTSSSSAHSSIRFSSSKPFVFTIRSSQT
Sbjct: 1   MSGACSFPFAKIKIPTVSSSSAAVSPSASAVSSTSSSSAHSSIRFSSSKPFVFTIRSSQT 60

Query: 61  DGPIRRPAAPSLREPSPPSPPPPLKPPPSSATAPVAQPSGKAYVAKQDNTITLEFQRQKA 120
           DGPIRRPAAPSLREPSPPSPPPPLKP P+SATAP +QPS KAYVAKQDNTITLEFQRQKA
Sbjct: 61  DGPIRRPAAPSLREPSPPSPPPPLKPTPTSATAPFSQPSAKAYVAKQDNTITLEFQRQKA 120

Query: 121 KELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKIL 180
           KELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKIL
Sbjct: 121 KELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKIL 180

Query: 181 LSNFGIVDLD 191
           LSNFGIVDLD
Sbjct: 181 LSNFGIVDLD 190

[Close]

BLAST of CmoCh04G025720.1 vs. NCBI nr
Match: XP_023535438.1 (light-harvesting complex-like protein OHP2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 306.6 bits (784), Expect = 1.5e-79
Identity = 175/190 (92.11%), Postives = 176/190 (92.63%), Query Frame = 0


Query: 1   MSGACSFPFAKIKIPTVSSSSAAVSPSASAASSTSSSSAHSSIRFSSSKPFVFTIRSSQT 60
           MSGACSFPFAKIKIPTVSSSSAAVSPSASAASSTSSSSAH+SIRFSSSKPFVFTIR SQT
Sbjct: 1   MSGACSFPFAKIKIPTVSSSSAAVSPSASAASSTSSSSAHTSIRFSSSKPFVFTIRCSQT 60

Query: 61  DGPIRRPAAPSLREPSPPSPPPPLKPPPSSATAPVAQPSGKAYVAKQDNTITLEFQRQKA 120
           DGPIRRPAAPSLREPS     PPLKP       PVAQPS KAYVAKQDNTITLEFQRQKA
Sbjct: 61  DGPIRRPAAPSLREPS-----PPLKP------TPVAQPSAKAYVAKQDNTITLEFQRQKA 120

Query: 121 KELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKIL 180
           KELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKIL
Sbjct: 121 KELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKIL 179

Query: 181 LSNFGIVDLD 191
           LSNFGIVDLD
Sbjct: 181 LSNFGIVDLD 179

[Close]

BLAST of CmoCh04G025720.1 vs. NCBI nr
Match: XP_022993308.1 (light-harvesting complex-like protein OHP2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 283.9 bits (725), Expect = 1.0e-72
Identity = 166/194 (85.57%), Postives = 169/194 (87.11%), Query Frame = 0


Query: 1   MSGACSFPFAKIKIPTVSSSSAAVSPSASAASSTSSSSAHSSIRFSSSKPFVFTIRSSQT 60
           MSGACS PFAKIKIP  SSS A  SPSASA SS SSSSAHSSIRFSSSKPFVFTIRSSQT
Sbjct: 1   MSGACSIPFAKIKIPAASSSPATASPSASATSSASSSSAHSSIRFSSSKPFVFTIRSSQT 60

Query: 61  DGPIRRPAAPSLREPSPPSPP---PPLKP-PPSSATAPVAQPSGKAYVAKQDNTITLEFQ 120
           +GP+RRPAAPSLREPSPPSPP   PPLKP PPSS T     P   AY AK DN ITLEFQ
Sbjct: 61  EGPLRRPAAPSLREPSPPSPPSPTPPLKPTPPSSQT-----PPSPAYAAKLDNVITLEFQ 120

Query: 121 RQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQ 180
           RQKAKELQEYFKQKKLDE DQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQ
Sbjct: 121 RQKAKELQEYFKQKKLDEDDQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQ 180

Query: 181 VKILLSNFGIVDLD 191
           VKILLSNFGIVDL+
Sbjct: 181 VKILLSNFGIVDLE 189

[Close]

BLAST of CmoCh04G025720.1 vs. TAIR 10
Match: AT1G34000.1 (one-helix protein 2 )

HSP 1 Score: 177.9 bits (450), Expect = 7.4e-45
Identity = 110/164 (67.07%), Postives = 126/164 (76.83%), Query Frame = 0


Query: 31  ASSTSSSSAHSSIRFS-SSKPFVFTIRSSQTDGPIRRPAA-PSLREPSPPSPP--PPLKP 90
           +SS+SSS+A SS RFS ++KP VF IR SQT+GP+RRP+A P+LREP  P PP  P   P
Sbjct: 16  SSSSSSSTASSSFRFSTTTKPCVFIIRCSQTEGPLRRPSAPPTLREPQKPVPPSQPSSSP 75

Query: 91  PPSSATAPVAQPSGKAYVAKQDNTITLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGK 150
           PPS        P  KA      +  T+EFQRQKAKELQEYFKQKKL+ A QGPFFGF  K
Sbjct: 76  PPS-------PPPQKAVAVDGKSVTTVEFQRQKAKELQEYFKQKKLEAAGQGPFFGFQPK 135

Query: 151 NEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILLSNFGIVDLD 191
           NEISNGRWAMFGFAVG+LTEYATGS+ VDQVKILLSNFGI+DL+
Sbjct: 136 NEISNGRWAMFGFAVGMLTEYATGSDLVDQVKILLSNFGILDLE 172

The following BLAST results are available for this feature:

BLAST of CmoCh04G025720.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FEC1	1.0e-43	67.07	Light-harvesting complex-like protein OHP2, chloroplastic OS=Arabidopsis thalian...	[more]

BLAST of CmoCh04G025720.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HG91	5.3e-91	100.00	light-harvesting complex-like protein OHP2, chloroplastic OS=Cucurbita moschata ...	[more]
A0A6J1JS47	1.2e-87	96.84	light-harvesting complex-like protein OHP2, chloroplastic OS=Cucurbita maxima OX...	[more]
A0A6J1K1U3	5.0e-73	85.57	light-harvesting complex-like protein OHP2, chloroplastic OS=Cucurbita maxima OX...	[more]
A0A6J1FIC8	1.1e-72	84.46	light-harvesting complex-like protein OHP2, chloroplastic OS=Cucurbita moschata ...	[more]
A0A1S3B3J8	4.5e-66	78.28	proline-rich receptor-like protein kinase PERK14 OS=Cucumis melo OX=3656 GN=LOC1...	[more]

BLAST of CmoCh04G025720.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022963822.1	1.1e-90	100.00	light-harvesting complex-like protein OHP2, chloroplastic [Cucurbita moschata]	[more]
KAG7032876.1	9.3e-90	99.47	Light-harvesting complex-like protein OHP2, chloroplastic [Cucurbita argyrosperm...	[more]
XP_022990469.1	2.5e-87	96.84	light-harvesting complex-like protein OHP2, chloroplastic [Cucurbita maxima]	[more]
XP_023535438.1	1.5e-79	92.11	light-harvesting complex-like protein OHP2, chloroplastic [Cucurbita pepo subsp....	[more]
XP_022993308.1	1.0e-72	85.57	light-harvesting complex-like protein OHP2, chloroplastic [Cucurbita maxima]	[more]

BLAST of CmoCh04G025720.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G34000.1	7.4e-45	67.07	one-helix protein 2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 90..183 e-value: 2.4E-5 score: 26.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..44
None	No IPR available	PANTHER	PTHR14154	UPF0041 BRAIN PROTEIN 44-RELATED	coord: 1..189
None	No IPR available	PANTHER	PTHR14154:SF83	MYB-LIKE PROTEIN U	coord: 1..189
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 136..179

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh04G025720	CmoCh04G025720	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G025720.1:exon:2489	CmoCh04G025720.1:exon:2489	exon
CmoCh04G025720.1:exon:2488	CmoCh04G025720.1:exon:2488	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G025720.1:three_prime_utr	CmoCh04G025720.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G025720.1:cds	CmoCh04G025720.1:cds_2	CDS
CmoCh04G025720.1:cds	CmoCh04G025720.1:cds	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G025720.1:five_prime_utr	CmoCh04G025720.1:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh04G025720.1	CmoCh04G025720.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006850	mitochondrial pyruvate transmembrane transport
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0031305	integral component of mitochondrial inner membrane
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0050833	pyruvate transmembrane transporter activity