CmoCh04G011680.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G011680.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	40S ribosomal protein S4
Location	Cmo_Chr04: 5961622 .. 5963529 (-)
Sequence length	1128
RNA-Seq Expression	CmoCh04G011680.1
Synteny	CmoCh04G011680.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCGTCCTGCACTCCCAGAAATATGCATACTATGATGGTTTCAGCAAGATGTTTTCCTCATATTTTTGTTTACTAAAATTAATGTATATGGCTGTGACAGGCAAGAGGATTGAAGAAACATTTGAAGAGGCTCAATGCCCCAAAGCATTGGATGCTCGACAAACTTGGTGGTGCATTTGTGAGTGAAAGTTCTAGTCTTCGTTTCAGTTTACATTTTATTTTTACCTACGCATTAAACTTATTGCTGACATTCGGTTCTACCTTTTAAATCCCTTTGTAGGCCCCCAAACCTTCATCAGGACCTCATAAATCAAGGGAATGTCTCCCACTTGTCCTCATATTGCGAAACCGATTGAAATATGCTCTCACATACCGTGAGGTAATTTCAATTTTGATGCAACGACATATTTTAGTTGATGGGAAGGTGAGAACTGACAAGACGTATCCGGCTGGCTTTATGGGTATGCTGATCTCAAACTTCTATTTATTCTATTGTTTCAGTTTCAATATTTACTGACCAGAAGATCTTTCAATCAATTCATCTACCATATTTTAACTTTATCAGCAAAGTTACCGTCTGCAAGCATGATACTAACAGTCACCTGTTATGTAACGTGTTTCAATATTTTGATTGTCAACTTGTTTGGAAGTTGTTCTTTTGAAACATGTCACTGCTTGGAACTGATGTGTCTTTTAGTTGTATAATGTGTTCTGTTTATTGTATTTTTAATGTGTTACCCTTATTTTTGTTGTAGATGTTGTGTCCATCCCCAAGACAAATGAGAATTTCCGGCTTCTGTATGACACTAAAGGGCGTTTCCGCCTTCACTCTGTCAGGGATGAAGAGGCTAAGGTTTGTTATTTGACCTGTCATTTGTTGCAAGCATTCCTGTTTTTTAGAATGTAGGGTGCTCAGGATACAGAAAATAAATGCAATTGCAAACAGTGTTTTTTTTACTATTGTCTAAACAGAAAATTACACTTGTAATACCAATCTTCATTTTTTTCTACATGATTCCTGTAAGTCAGCTGTTTTCTTCCCTTGGTTAAGGTTTTTGATCTTCATGTAGGGACATTTTTTTCTATGTGATAATCGTAATGGGATGATTCATGATGACTGTGATATTGTCTTTGCAGTTCAAGCTCTGTAAGGTTCGCTCTGTGCAGTTTGGGCAGAAGGGAATTCCTTATCTGAATACATACGACGGGCGTACCATCCGTTATCCCGACCCCCTGATCAAGGCAAACGACACCATCAAGTTGGATCTTGAGTCTAACAAGATTGCTGATTTCATAAAGTTTGATGTAGGAAATGTTGTCATGGTGACTGGTGGACGAAACAGAGGTCGAGTGGGAATCCTTAAAAACAGAGAGAAGCACAAGGGAAGCTTTGAGACGGTCCATATTCAGGATGCAACTGGGCATGAATTTGCGACTCGGCTAGGCAACGTGTTTACACTCGGGAAGGGAACCAAGCCATGGGTTTCCCTCCCCAAGGGCAAGGGTATAAAACTGTCCATCATTGAAGAAGCTAGGAAGAGGCTTGCAAGCCAGGCAGCAGTTACTGCTTAAGAGTTTGTGTTGTTGTAGTCATGGATTTTCAATGGTTTTGATTTGGCACATCTGTTTCTTGAATTTTGCTTTCTTAATTATTTATGGGCAAGTTGAGATCTTTTAAGACAATTTATTTCTACTAGAAATTTGTGGAGGCTGTTACTTCTATATCATGATTTTGTGGAGCAAGTTTTGTGGTTCAAAAATTCTTGCAGTGGACTGAGGCCGAGTTAGCTGATTTATAGTGTTGTGAGTCTGCTCTACCCTCAATTTTTATTTCTCCACTGGTTGTCTTCTGGCTTTCATAATTCTAACATTTTTTTTTTAAAGAAATGTGGACTTATTTTTCAG

mRNA sequence

ATGGCAAGAGGATTGAAGAAACATTTGAAGAGGCTCAATGCCCCAAAGCATTGGATGCTCGACAAACTTGGTGGTGCATTTGCCCCCAAACCTTCATCAGGACCTCATAAATCAAGGGAATGTCTCCCACTTGTCCTCATATTGCGAAACCGATTGAAATATGCTCTCACATACCGTGAGGTAATTTCAATTTTGATGCAACGACATATTTTAGTTGATGGGAAGGTGAGAACTGACAAGACGTATCCGGCTGGCTTTATGGATGTTGTGTCCATCCCCAAGACAAATGAGAATTTCCGGCTTCTGTATGACACTAAAGGGCGTTTCCGCCTTCACTCTGTCAGGGATGAAGAGGCTAAGTTCAAGCTCTGTAAGGTTCGCTCTGTGCAGTTTGGGCAGAAGGGAATTCCTTATCTGAATACATACGACGGGCGTACCATCCGTTATCCCGACCCCCTGATCAAGGCAAACGACACCATCAAGTTGGATCTTGAGTCTAACAAGATTGCTGATTTCATAAAGTTTGATGTAGGAAATGTTGTCATGGTGACTGGTGGACGAAACAGAGGTCGAGTGGGAATCCTTAAAAACAGAGAGAAGCACAAGGGAAGCTTTGAGACGGTCCATATTCAGGATGCAACTGGGCATGAATTTGCGACTCGGCTAGGCAACGTGTTTACACTCGGGAAGGGAACCAAGCCATGGGTTTCCCTCCCCAAGGGCAAGGGTATAAAACTGTCCATCATTGAAGAAGCTAGGAAGAGGCTTGCAAGCCAGGCAGCAGTTACTGCTTAAGAGTTTGTGTTGTTGTAGTCATGGATTTTCAATGGTTTTGATTTGGCACATCTGTTTCTTGAATTTTGCTTTCTTAATTATTTATGGGCAAGTTGAGATCTTTTAAGACAATTTATTTCTACTAGAAATTTGTGGAGGCTGTTACTTCTATATCATGATTTTGTGGAGCAAGTTTTGTGGTTCAAAAATTCTTGCAGTGGACTGAGGCCGAGTTAGCTGATTTATAGTGTTGTGAGTCTGCTCTACCCTCAATTTTTATTTCTCCACTGGTTGTCTTCTGGCTTTCATAATTCTAACATTTTTTTTTTAAAGAAATGTGGACTTATTTTTCAG

Coding sequence (CDS)

ATGGCAAGAGGATTGAAGAAACATTTGAAGAGGCTCAATGCCCCAAAGCATTGGATGCTCGACAAACTTGGTGGTGCATTTGCCCCCAAACCTTCATCAGGACCTCATAAATCAAGGGAATGTCTCCCACTTGTCCTCATATTGCGAAACCGATTGAAATATGCTCTCACATACCGTGAGGTAATTTCAATTTTGATGCAACGACATATTTTAGTTGATGGGAAGGTGAGAACTGACAAGACGTATCCGGCTGGCTTTATGGATGTTGTGTCCATCCCCAAGACAAATGAGAATTTCCGGCTTCTGTATGACACTAAAGGGCGTTTCCGCCTTCACTCTGTCAGGGATGAAGAGGCTAAGTTCAAGCTCTGTAAGGTTCGCTCTGTGCAGTTTGGGCAGAAGGGAATTCCTTATCTGAATACATACGACGGGCGTACCATCCGTTATCCCGACCCCCTGATCAAGGCAAACGACACCATCAAGTTGGATCTTGAGTCTAACAAGATTGCTGATTTCATAAAGTTTGATGTAGGAAATGTTGTCATGGTGACTGGTGGACGAAACAGAGGTCGAGTGGGAATCCTTAAAAACAGAGAGAAGCACAAGGGAAGCTTTGAGACGGTCCATATTCAGGATGCAACTGGGCATGAATTTGCGACTCGGCTAGGCAACGTGTTTACACTCGGGAAGGGAACCAAGCCATGGGTTTCCCTCCCCAAGGGCAAGGGTATAAAACTGTCCATCATTGAAGAAGCTAGGAAGAGGCTTGCAAGCCAGGCAGCAGTTACTGCTTAA

Protein sequence

MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLILRNRLKYALTYREVISILMQRHILVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNVVMVTGGRNRGRVGILKNREKHKGSFETVHIQDATGHEFATRLGNVFTLGKGTKPWVSLPKGKGIKLSIIEEARKRLASQAAVTA

Homology

[Close]

BLAST of CmoCh04G011680.1 vs. ExPASy Swiss-Prot
Match: Q8VYK6 (40S ribosomal protein S4-3 OS=Arabidopsis thaliana OX=3702 GN=RPS4D PE=2 SV=2)

HSP 1 Score: 510.4 bits (1313), Expect = 1.2e-143
Identity = 244/261 (93.49%), Postives = 257/261 (98.47%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VISILMQRHILVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VISILMQRHI VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAK
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180
           FKLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDLE+NKI +FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGILKNREKHKGSFETVHIQDATGHEFATRLGNVFTLGKGTKPWVSLPK 240
           VMVTGGRNRGRVG++KNREKHKGSFET+HIQD+TGHEFATRLGNV+T+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAA 262
           GKGIKL+IIEEARKRLASQ A
Sbjct: 241 GKGIKLTIIEEARKRLASQQA 261

[Close]

BLAST of CmoCh04G011680.1 vs. ExPASy Swiss-Prot
Match: P49204 (40S ribosomal protein S4-2 OS=Arabidopsis thaliana OX=3702 GN=RPS4B PE=2 SV=4)

HSP 1 Score: 510.0 bits (1312), Expect = 1.6e-143
Identity = 244/261 (93.49%), Postives = 256/261 (98.08%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VISILMQRHILVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VISILMQRHI VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAK
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180
           FKLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDLE NKI +FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGILKNREKHKGSFETVHIQDATGHEFATRLGNVFTLGKGTKPWVSLPK 240
           VMVTGGRNRGRVG++KNREKHKGSFET+HIQD+TGHEFATRLGNV+T+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAA 262
           GKGIKL+IIEEARKRLASQ A
Sbjct: 241 GKGIKLTIIEEARKRLASQQA 261

[Close]

BLAST of CmoCh04G011680.1 vs. ExPASy Swiss-Prot
Match: P46300 (40S ribosomal protein S4 OS=Solanum tuberosum OX=4113 GN=RPS4 PE=2 SV=1)

HSP 1 Score: 510.0 bits (1312), Expect = 1.6e-143
Identity = 245/264 (92.80%), Postives = 259/264 (98.11%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLV+I+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIIMRNRLKYALTYRE 60

Query: 61  VISILMQRHILVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VISILMQR ++VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS+RDEE+K
Sbjct: 61  VISILMQRQVMVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEESK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180
           FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKI DFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGILKNREKHKGSFETVHIQDATGHEFATRLGNVFTLGKGTKPWVSLPK 240
           VMVTGGRNRGRVG++KNREKHKGSFET+HIQD+ GHEFATRLGNVFTLGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETLHIQDSQGHEFATRLGNVFTLGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 265
           GKGIKL+IIE+ARKRLA+Q+A  A
Sbjct: 241 GKGIKLTIIEDARKRLAAQSATPA 264

[Close]

BLAST of CmoCh04G011680.1 vs. ExPASy Swiss-Prot
Match: Q93VH9 (40S ribosomal protein S4-1 OS=Arabidopsis thaliana OX=3702 GN=RPS4A PE=2 SV=1)

HSP 1 Score: 507.7 bits (1306), Expect = 8.0e-143
Identity = 242/261 (92.72%), Postives = 256/261 (98.08%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VISILMQRHILVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VISILMQRHI VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAK
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180
           FKLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDLE NKI +FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGILKNREKHKGSFETVHIQDATGHEFATRLGNVFTLGKGTKPWVSLPK 240
           VMVTGGRNRGRVG++KNREKHKGSFET+HIQD+TGHEFATRLGNV+T+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAA 262
           GKGIKL+IIEEARKRL++Q A
Sbjct: 241 GKGIKLTIIEEARKRLSAQQA 261

[Close]

BLAST of CmoCh04G011680.1 vs. ExPASy Swiss-Prot
Match: P46299 (40S ribosomal protein S4 OS=Gossypium hirsutum OX=3635 GN=RPS4 PE=2 SV=1)

HSP 1 Score: 498.4 bits (1282), Expect = 4.9e-140
Identity = 238/261 (91.19%), Postives = 253/261 (96.93%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLILRNRLKYALTYRE 60
           MARGLKKHLKRLNAP+HWMLDKLGGAFAPKPSSGPHKSRECLPL+LILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VISILMQRHILVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VI+ILMQRH++VDGKVRTDKTYPAGFMDVVSIPKTNE+FRLLYDTKGRF LH++  +E K
Sbjct: 61  VIAILMQRHVMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFCLHAITGDETK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180
           FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKI DFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGILKNREKHKGSFETVHIQDATGHEFATRLGNVFTLGKGTKPWVSLPK 240
           VMVTGGRNRGRVG++KNREKHKGSFET+H+QDA GHEFATRLGNVFT+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDAAGHEFATRLGNVFTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAA 262
            KGIKLSIIEEARKRLA+Q A
Sbjct: 241 RKGIKLSIIEEARKRLAAQNA 261

[Close]

BLAST of CmoCh04G011680.1 vs. ExPASy TrEMBL
Match: A0A6J1H190 (40S ribosomal protein S4 OS=Cucurbita moschata OX=3662 GN=LOC111458662 PE=3 SV=1)

HSP 1 Score: 533.9 bits (1374), Expect = 3.9e-148
Identity = 264/264 (100.00%), Postives = 264/264 (100.00%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLILRNRLKYALTYRE 60

Query: 61  VISILMQRHILVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VISILMQRHILVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK
Sbjct: 61  VISILMQRHILVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180
           FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGILKNREKHKGSFETVHIQDATGHEFATRLGNVFTLGKGTKPWVSLPK 240
           VMVTGGRNRGRVGILKNREKHKGSFETVHIQDATGHEFATRLGNVFTLGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGILKNREKHKGSFETVHIQDATGHEFATRLGNVFTLGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 265
           GKGIKLSIIEEARKRLASQAAVTA
Sbjct: 241 GKGIKLSIIEEARKRLASQAAVTA 264

[Close]

BLAST of CmoCh04G011680.1 vs. ExPASy TrEMBL
Match: A0A6J1IHK6 (40S ribosomal protein S4 OS=Cucurbita maxima OX=3661 GN=LOC111477286 PE=3 SV=1)

HSP 1 Score: 531.6 bits (1368), Expect = 1.9e-147
Identity = 263/264 (99.62%), Postives = 263/264 (99.62%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLILRNRLKYALTYRE 60

Query: 61  VISILMQRHILVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VISILMQRHILVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEA 
Sbjct: 61  VISILMQRHILVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAM 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180
           FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGILKNREKHKGSFETVHIQDATGHEFATRLGNVFTLGKGTKPWVSLPK 240
           VMVTGGRNRGRVGILKNREKHKGSFETVHIQDATGHEFATRLGNVFTLGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGILKNREKHKGSFETVHIQDATGHEFATRLGNVFTLGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 265
           GKGIKLSIIEEARKRLASQAAVTA
Sbjct: 241 GKGIKLSIIEEARKRLASQAAVTA 264

[Close]

BLAST of CmoCh04G011680.1 vs. ExPASy TrEMBL
Match: A0A6J1BSY6 (40S ribosomal protein S4 OS=Momordica charantia OX=3673 GN=LOC111005064 PE=3 SV=1)

HSP 1 Score: 527.3 bits (1357), Expect = 3.6e-146
Identity = 255/264 (96.59%), Postives = 264/264 (100.00%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VISILMQRHILVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VI+ILMQRH+LVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180
           +KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNV
Sbjct: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGILKNREKHKGSFETVHIQDATGHEFATRLGNVFTLGKGTKPWVSLPK 240
           VMVTGGRNRGRVG++KNREKHKGSFET+HIQDATGHEFATRLGNVFT+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 265
           GKGIKLSIIEEARKRLASQAAVTA
Sbjct: 241 GKGIKLSIIEEARKRLASQAAVTA 264

[Close]

BLAST of CmoCh04G011680.1 vs. ExPASy TrEMBL
Match: A0A6J1EP89 (40S ribosomal protein S4 OS=Cucurbita moschata OX=3662 GN=LOC111436471 PE=3 SV=1)

HSP 1 Score: 527.3 bits (1357), Expect = 3.6e-146
Identity = 255/263 (96.96%), Postives = 263/263 (100.00%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VISILMQRHILVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VISILMQRH+LVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK
Sbjct: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180
           FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGILKNREKHKGSFETVHIQDATGHEFATRLGNVFTLGKGTKPWVSLPK 240
           VMVTGGRNRGRVG++KNREKHKGSFET+HIQDATGHEFATRLGNVFT+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVT 264
           GKGIKLSIIEEARKRLA+QAAVT
Sbjct: 241 GKGIKLSIIEEARKRLANQAAVT 263

[Close]

BLAST of CmoCh04G011680.1 vs. ExPASy TrEMBL
Match: A0A6J1JYT2 (40S ribosomal protein S4 OS=Cucurbita maxima OX=3661 GN=LOC111490080 PE=3 SV=1)

HSP 1 Score: 526.9 bits (1356), Expect = 4.7e-146
Identity = 254/263 (96.58%), Postives = 263/263 (100.00%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VISILMQRHILVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VISILMQRH+LVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK
Sbjct: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180
           FKLCK+RSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNV
Sbjct: 121 FKLCKIRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGILKNREKHKGSFETVHIQDATGHEFATRLGNVFTLGKGTKPWVSLPK 240
           VMVTGGRNRGRVG++KNREKHKGSFET+HIQDATGHEFATRLGNVFT+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVT 264
           GKGIKLSIIEEARKRLA+QAAVT
Sbjct: 241 GKGIKLSIIEEARKRLANQAAVT 263

[Close]

BLAST of CmoCh04G011680.1 vs. NCBI nr
Match: XP_022957194.1 (40S ribosomal protein S4-3 [Cucurbita moschata] >KAG6600912.1 40S ribosomal protein S4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031547.1 40S ribosomal protein S4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 533.9 bits (1374), Expect = 8.0e-148
Identity = 264/264 (100.00%), Postives = 264/264 (100.00%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLILRNRLKYALTYRE 60

Query: 61  VISILMQRHILVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VISILMQRHILVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK
Sbjct: 61  VISILMQRHILVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180
           FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGILKNREKHKGSFETVHIQDATGHEFATRLGNVFTLGKGTKPWVSLPK 240
           VMVTGGRNRGRVGILKNREKHKGSFETVHIQDATGHEFATRLGNVFTLGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGILKNREKHKGSFETVHIQDATGHEFATRLGNVFTLGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 265
           GKGIKLSIIEEARKRLASQAAVTA
Sbjct: 241 GKGIKLSIIEEARKRLASQAAVTA 264

[Close]

BLAST of CmoCh04G011680.1 vs. NCBI nr
Match: XP_023546337.1 (40S ribosomal protein S4-3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 533.5 bits (1373), Expect = 1.0e-147
Identity = 263/264 (99.62%), Postives = 264/264 (100.00%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLILRNRLKYALTYRE 60

Query: 61  VISILMQRHILVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VISILMQRHILVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK
Sbjct: 61  VISILMQRHILVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180
           FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGILKNREKHKGSFETVHIQDATGHEFATRLGNVFTLGKGTKPWVSLPK 240
           VMVTGGRNRGRVG+LKNREKHKGSFETVHIQDATGHEFATRLGNVFTLGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVLKNREKHKGSFETVHIQDATGHEFATRLGNVFTLGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 265
           GKGIKLSIIEEARKRLASQAAVTA
Sbjct: 241 GKGIKLSIIEEARKRLASQAAVTA 264

[Close]

BLAST of CmoCh04G011680.1 vs. NCBI nr
Match: XP_022977127.1 (40S ribosomal protein S4-3-like [Cucurbita maxima])

HSP 1 Score: 531.6 bits (1368), Expect = 4.0e-147
Identity = 263/264 (99.62%), Postives = 263/264 (99.62%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLILRNRLKYALTYRE 60

Query: 61  VISILMQRHILVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VISILMQRHILVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEA 
Sbjct: 61  VISILMQRHILVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAM 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180
           FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGILKNREKHKGSFETVHIQDATGHEFATRLGNVFTLGKGTKPWVSLPK 240
           VMVTGGRNRGRVGILKNREKHKGSFETVHIQDATGHEFATRLGNVFTLGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGILKNREKHKGSFETVHIQDATGHEFATRLGNVFTLGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 265
           GKGIKLSIIEEARKRLASQAAVTA
Sbjct: 241 GKGIKLSIIEEARKRLASQAAVTA 264

[Close]

BLAST of CmoCh04G011680.1 vs. NCBI nr
Match: XP_022132117.1 (40S ribosomal protein S4-3 [Momordica charantia])

HSP 1 Score: 527.3 bits (1357), Expect = 7.5e-146
Identity = 255/264 (96.59%), Postives = 264/264 (100.00%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VISILMQRHILVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VI+ILMQRH+LVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180
           +KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNV
Sbjct: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGILKNREKHKGSFETVHIQDATGHEFATRLGNVFTLGKGTKPWVSLPK 240
           VMVTGGRNRGRVG++KNREKHKGSFET+HIQDATGHEFATRLGNVFT+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 265
           GKGIKLSIIEEARKRLASQAAVTA
Sbjct: 241 GKGIKLSIIEEARKRLASQAAVTA 264

[Close]

BLAST of CmoCh04G011680.1 vs. NCBI nr
Match: XP_022930037.1 (40S ribosomal protein S4-3-like [Cucurbita moschata] >XP_023518516.1 40S ribosomal protein S4-3-like [Cucurbita pepo subsp. pepo] >KAG6601711.1 40S ribosomal protein S4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 527.3 bits (1357), Expect = 7.5e-146
Identity = 255/263 (96.96%), Postives = 263/263 (100.00%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VISILMQRHILVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VISILMQRH+LVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK
Sbjct: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180
           FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGILKNREKHKGSFETVHIQDATGHEFATRLGNVFTLGKGTKPWVSLPK 240
           VMVTGGRNRGRVG++KNREKHKGSFET+HIQDATGHEFATRLGNVFT+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVT 264
           GKGIKLSIIEEARKRLA+QAAVT
Sbjct: 241 GKGIKLSIIEEARKRLANQAAVT 263

[Close]

BLAST of CmoCh04G011680.1 vs. TAIR 10
Match: AT5G58420.1 (Ribosomal protein S4 (RPS4A) family protein )

HSP 1 Score: 510.4 bits (1313), Expect = 8.8e-145
Identity = 244/261 (93.49%), Postives = 257/261 (98.47%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VISILMQRHILVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VISILMQRHI VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAK
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180
           FKLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDLE+NKI +FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGILKNREKHKGSFETVHIQDATGHEFATRLGNVFTLGKGTKPWVSLPK 240
           VMVTGGRNRGRVG++KNREKHKGSFET+HIQD+TGHEFATRLGNV+T+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAA 262
           GKGIKL+IIEEARKRLASQ A
Sbjct: 241 GKGIKLTIIEEARKRLASQQA 261

[Close]

BLAST of CmoCh04G011680.1 vs. TAIR 10
Match: AT5G07090.1 (Ribosomal protein S4 (RPS4A) family protein )

HSP 1 Score: 510.0 bits (1312), Expect = 1.1e-144
Identity = 244/261 (93.49%), Postives = 256/261 (98.08%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VISILMQRHILVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VISILMQRHI VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAK
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180
           FKLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDLE NKI +FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGILKNREKHKGSFETVHIQDATGHEFATRLGNVFTLGKGTKPWVSLPK 240
           VMVTGGRNRGRVG++KNREKHKGSFET+HIQD+TGHEFATRLGNV+T+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAA 262
           GKGIKL+IIEEARKRLASQ A
Sbjct: 241 GKGIKLTIIEEARKRLASQQA 261

[Close]

BLAST of CmoCh04G011680.1 vs. TAIR 10
Match: AT2G17360.1 (Ribosomal protein S4 (RPS4A) family protein )

HSP 1 Score: 507.7 bits (1306), Expect = 5.7e-144
Identity = 242/261 (92.72%), Postives = 256/261 (98.08%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VISILMQRHILVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VISILMQRHI VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAK
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180
           FKLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDLE NKI +FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGILKNREKHKGSFETVHIQDATGHEFATRLGNVFTLGKGTKPWVSLPK 240
           VMVTGGRNRGRVG++KNREKHKGSFET+HIQD+TGHEFATRLGNV+T+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAA 262
           GKGIKL+IIEEARKRL++Q A
Sbjct: 241 GKGIKLTIIEEARKRLSAQQA 261

[Close]

BLAST of CmoCh04G011680.1 vs. TAIR 10
Match: AT5G07090.2 (Ribosomal protein S4 (RPS4A) family protein )

HSP 1 Score: 471.5 bits (1212), Expect = 4.5e-133
Identity = 226/243 (93.00%), Postives = 238/243 (97.94%), Query Frame = 0


Query: 19  MLDKLGGAFAPKPSSGPHKSRECLPLVLILRNRLKYALTYREVISILMQRHILVDGKVRT 78
           MLDKLGGAFAPKPSSGPHKSRECLPLVLI+RNRLKYALTYREVISILMQRHI VDGKVRT
Sbjct: 1   MLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRT 60

Query: 79  DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPY 138
           DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAKFKLCKVRS+QFGQKGIPY
Sbjct: 61  DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPY 120

Query: 139 LNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNVVMVTGGRNRGRVGILKNR 198
           LNTYDGRTIRYPDPLIK NDTIKLDLE NKI +FIKFDVGNVVMVTGGRNRGRVG++KNR
Sbjct: 121 LNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNR 180

Query: 199 EKHKGSFETVHIQDATGHEFATRLGNVFTLGKGTKPWVSLPKGKGIKLSIIEEARKRLAS 258
           EKHKGSFET+HIQD+TGHEFATRLGNV+T+GKGTKPWVSLPKGKGIKL+IIEEARKRLAS
Sbjct: 181 EKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKRLAS 240

Query: 259 QAA 262
           Q A
Sbjct: 241 QQA 243

[Close]

BLAST of CmoCh04G011680.1 vs. TAIR 10
Match: AT2G17360.2 (Ribosomal protein S4 (RPS4A) family protein )

HSP 1 Score: 355.9 bits (912), Expect = 2.8e-98
Identity = 170/181 (93.92%), Postives = 175/181 (96.69%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VISILMQRHILVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VISILMQRHI VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAK
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180
           FKLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDLE NKI +FIKFDVG  
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGKC 180

Query: 181 V 182
           V
Sbjct: 181 V 181

The following BLAST results are available for this feature:

BLAST of CmoCh04G011680.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VYK6	1.2e-143	93.49	40S ribosomal protein S4-3 OS=Arabidopsis thaliana OX=3702 GN=RPS4D PE=2 SV=2	[more]
P49204	1.6e-143	93.49	40S ribosomal protein S4-2 OS=Arabidopsis thaliana OX=3702 GN=RPS4B PE=2 SV=4	[more]
P46300	1.6e-143	92.80	40S ribosomal protein S4 OS=Solanum tuberosum OX=4113 GN=RPS4 PE=2 SV=1	[more]
Q93VH9	8.0e-143	92.72	40S ribosomal protein S4-1 OS=Arabidopsis thaliana OX=3702 GN=RPS4A PE=2 SV=1	[more]
P46299	4.9e-140	91.19	40S ribosomal protein S4 OS=Gossypium hirsutum OX=3635 GN=RPS4 PE=2 SV=1	[more]

BLAST of CmoCh04G011680.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H190	3.9e-148	100.00	40S ribosomal protein S4 OS=Cucurbita moschata OX=3662 GN=LOC111458662 PE=3 SV=1	[more]
A0A6J1IHK6	1.9e-147	99.62	40S ribosomal protein S4 OS=Cucurbita maxima OX=3661 GN=LOC111477286 PE=3 SV=1	[more]
A0A6J1BSY6	3.6e-146	96.59	40S ribosomal protein S4 OS=Momordica charantia OX=3673 GN=LOC111005064 PE=3 SV=...	[more]
A0A6J1EP89	3.6e-146	96.96	40S ribosomal protein S4 OS=Cucurbita moschata OX=3662 GN=LOC111436471 PE=3 SV=1	[more]
A0A6J1JYT2	4.7e-146	96.58	40S ribosomal protein S4 OS=Cucurbita maxima OX=3661 GN=LOC111490080 PE=3 SV=1	[more]

BLAST of CmoCh04G011680.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022957194.1	8.0e-148	100.00	40S ribosomal protein S4-3 [Cucurbita moschata] >KAG6600912.1 40S ribosomal prot...	[more]
XP_023546337.1	1.0e-147	99.62	40S ribosomal protein S4-3 [Cucurbita pepo subsp. pepo]	[more]
XP_022977127.1	4.0e-147	99.62	40S ribosomal protein S4-3-like [Cucurbita maxima]	[more]
XP_022132117.1	7.5e-146	96.59	40S ribosomal protein S4-3 [Momordica charantia]	[more]
XP_022930037.1	7.5e-146	96.96	40S ribosomal protein S4-3-like [Cucurbita moschata] >XP_023518516.1 40S ribosom...	[more]

BLAST of CmoCh04G011680.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58420.1	8.8e-145	93.49	Ribosomal protein S4 (RPS4A) family protein	[more]
AT5G07090.1	1.1e-144	93.49	Ribosomal protein S4 (RPS4A) family protein	[more]
AT2G17360.1	5.7e-144	92.72	Ribosomal protein S4 (RPS4A) family protein	[more]
AT5G07090.2	4.5e-133	93.00	Ribosomal protein S4 (RPS4A) family protein	[more]
AT2G17360.2	2.8e-98	93.92	Ribosomal protein S4 (RPS4A) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005824	KOW	SMART	SM00739	kow_9	coord: 174..201 e-value: 0.0031 score: 26.8
IPR005824	KOW	PFAM	PF00467	KOW	coord: 177..210 e-value: 3.2E-6 score: 26.9
IPR002942	RNA-binding S4 domain	SMART	SM00363	s4_6	coord: 42..106 e-value: 0.0081 score: 25.4
IPR002942	RNA-binding S4 domain	PFAM	PF01479	S4	coord: 43..90 e-value: 7.3E-7 score: 28.8
IPR002942	RNA-binding S4 domain	CDD	cd00165	S4	coord: 51..112 e-value: 1.00668E-5 score: 40.6958
IPR013845	Ribosomal protein S4e, central region	PFAM	PF00900	Ribosomal_S4e	coord: 95..169 e-value: 1.5E-35 score: 120.8
IPR036986	RNA-binding S4 domain superfamily	GENE3D	3.10.290.10		coord: 1..117 e-value: 1.5E-61 score: 207.5
IPR013843	Ribosomal protein S4e, N-terminal	PFAM	PF08071	RS4NT	coord: 3..39 e-value: 4.1E-19 score: 68.4
IPR038237	Ribosomal protein S4e, central domain superfamily	GENE3D	2.40.50.740		coord: 122..172 e-value: 2.3E-31 score: 109.3
IPR000876	Ribosomal protein S4e	PIRSF	PIRSF002116	RPS4a_RPS4e	coord: 1..241 e-value: 6.6E-96 score: 318.1
IPR000876	Ribosomal protein S4e	PANTHER	PTHR11581	30S/40S RIBOSOMAL PROTEIN S4	coord: 221..264 coord: 2..220
IPR000876	Ribosomal protein S4e	HAMAP	MF_00485	Ribosomal_S4e	coord: 7..238 score: 36.215698
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 175..245 e-value: 1.0E-37 score: 129.8
IPR032277	40S ribosomal protein S4, C-terminal domain	PFAM	PF16121	40S_S4_C	coord: 212..258 e-value: 5.9E-25 score: 86.7
None	No IPR available	PANTHER	PTHR11581:SF33	40S RIBOSOMAL PROTEIN S4	coord: 221..264 coord: 2..220
None	No IPR available	PROSITE	PS50889	S4	coord: 42..104 score: 9.057878
IPR018199	Ribosomal protein S4e, N-terminal, conserved site	PROSITE	PS00528	RIBOSOMAL_S4E	coord: 8..22
IPR041982	Ribosomal protein S4, KOW domain	CDD	cd06087	KOW_RPS4	coord: 175..229 e-value: 3.96638E-29 score: 102.979

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh04G011680	CmoCh04G011680	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G011680.1:exon:3882	CmoCh04G011680.1:exon:3882	exon
CmoCh04G011680.1:exon:3881	CmoCh04G011680.1:exon:3881	exon
CmoCh04G011680.1:exon:3880	CmoCh04G011680.1:exon:3880	exon
CmoCh04G011680.1:exon:3879	CmoCh04G011680.1:exon:3879	exon
CmoCh04G011680.1:exon:3878	CmoCh04G011680.1:exon:3878	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G011680.1:three_prime_utr	CmoCh04G011680.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G011680.1:cds	CmoCh04G011680.1:cds_5	CDS
CmoCh04G011680.1:cds	CmoCh04G011680.1:cds_4	CDS
CmoCh04G011680.1:cds	CmoCh04G011680.1:cds_3	CDS
CmoCh04G011680.1:cds	CmoCh04G011680.1:cds_2	CDS
CmoCh04G011680.1:cds	CmoCh04G011680.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh04G011680.1	CmoCh04G011680.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022627	cytosolic small ribosomal subunit
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0019843	rRNA binding