CmoCh04G010810.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G010810.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Extensin-like
Location	Cmo_Chr04: 5448107 .. 5448484 (+)
Sequence length	378
RNA-Seq Expression	CmoCh04G010810.1
Synteny	CmoCh04G010810.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCATCCAAACGAGGCCTCGTTATGCTCTGTTCATCCTCAGCTTCTTCTTCTTCTTTCTTTCAACCAATGTAGTACTCACCCATGGCTTCCTCTCTTCCAAGAAGCTTGATGAATCCACCGGCGGGGACGATCCCAGCGTCAAGTGTACACCCTGCACCCATAATCCGCCACCCCCACCACCCCCACCGAAGAAACCGTCACCGGCCTACTGCCCTCCTCCACCGCCTCCTCCGTCGTCTTTCATTTACATACTCGGCCCCCCCGGAAACTTGTATCCCATTGACCGGGACTTCGCCGGTGCTGATCGAAGGAGGGTAGCCGTGGAGTTGTCGGCGGTTGCTCTCTTTGGATTGATTGGTTTTCTTGGAGTTTGA

mRNA sequence

ATGTGCATCCAAACGAGGCCTCGTTATGCTCTGTTCATCCTCAGCTTCTTCTTCTTCTTTCTTTCAACCAATGTAGTACTCACCCATGGCTTCCTCTCTTCCAAGAAGCTTGATGAATCCACCGGCGGGGACGATCCCAGCGTCAAGTGTACACCCTGCACCCATAATCCGCCACCCCCACCACCCCCACCGAAGAAACCGTCACCGGCCTACTGCCCTCCTCCACCGCCTCCTCCGTCGTCTTTCATTTACATACTCGGCCCCCCCGGAAACTTGTATCCCATTGACCGGGACTTCGCCGGTGCTGATCGAAGGAGGGTAGCCGTGGAGTTGTCGGCGGTTGCTCTCTTTGGATTGATTGGTTTTCTTGGAGTTTGA

Coding sequence (CDS)

ATGTGCATCCAAACGAGGCCTCGTTATGCTCTGTTCATCCTCAGCTTCTTCTTCTTCTTTCTTTCAACCAATGTAGTACTCACCCATGGCTTCCTCTCTTCCAAGAAGCTTGATGAATCCACCGGCGGGGACGATCCCAGCGTCAAGTGTACACCCTGCACCCATAATCCGCCACCCCCACCACCCCCACCGAAGAAACCGTCACCGGCCTACTGCCCTCCTCCACCGCCTCCTCCGTCGTCTTTCATTTACATACTCGGCCCCCCCGGAAACTTGTATCCCATTGACCGGGACTTCGCCGGTGCTGATCGAAGGAGGGTAGCCGTGGAGTTGTCGGCGGTTGCTCTCTTTGGATTGATTGGTTTTCTTGGAGTTTGA

Protein sequence

MCIQTRPRYALFILSFFFFFLSTNVVLTHGFLSSKKLDESTGGDDPSVKCTPCTHNPPPPPPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLIGFLGV

Homology

[Close]

BLAST of CmoCh04G010810.1 vs. ExPASy TrEMBL
Match: A0A6J1FVH5 (probable glycosyltransferase 4 OS=Cucurbita moschata OX=3662 GN=LOC111447243 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 1.7e-61
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MCIQTRPRYALFILSFFFFFLSTNVVLTHGFLSSKKLDESTGGDDPSVKCTPCTHNPPPP 60
           MCIQTRPRYALFILSFFFFFLSTNVVLTHGFLSSKKLDESTGGDDPSVKCTPCTHNPPPP
Sbjct: 1   MCIQTRPRYALFILSFFFFFLSTNVVLTHGFLSSKKLDESTGGDDPSVKCTPCTHNPPPP 60

Query: 61  PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLI 120
           PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLI
Sbjct: 61  PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLI 120

Query: 121 GFLGV 126
           GFLGV
Sbjct: 121 GFLGV 125

[Close]

BLAST of CmoCh04G010810.1 vs. ExPASy TrEMBL
Match: A0A0A0KSV7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G283490 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 5.7e-33
Identity = 84/125 (67.20%), Postives = 92/125 (73.60%), Query Frame = 0


Query: 1   MCIQTRPRYALFILSFFFFFLSTNVVLTHGFLSSKKLDESTGGDDPSVKCTPCTHNPPPP 60
           MCIQ  P Y+L IL  FF  LS N+   HGF+SSKKLDE     D SVKCTPCT   PPP
Sbjct: 1   MCIQPHPFYSLLIL-HFFLILSINLQPIHGFISSKKLDEPIPRHDSSVKCTPCTRYSPPP 60

Query: 61  PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLI 120
           PPPPKKP P YCPPPP PPSSFIY+LGPP NLYPI+ DFA ADRR VA+EL  VA FGLI
Sbjct: 61  PPPPKKPPPIYCPPPPLPPSSFIYMLGPPVNLYPIEHDFASADRRSVAMELPVVAFFGLI 120

Query: 121 GFLGV 126
           G + +
Sbjct: 121 GLIAL 124

[Close]

BLAST of CmoCh04G010810.1 vs. ExPASy TrEMBL
Match: A0A6J1DRJ1 (acrosin-like OS=Momordica charantia OX=3673 GN=LOC111022525 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 5.9e-30
Identity = 85/127 (66.93%), Postives = 94/127 (74.02%), Query Frame = 0


Query: 1   MCIQTRPRYALFILSFFFFFLSTNVVLTHGFLSSKKLDESTGGDDPSVKCTPCT--HNPP 60
           M IQT+    L ILS        NVV  HG +SS KLD STGGD  +VKCTPCT  + PP
Sbjct: 1   MWIQTQILNLLLILSI-------NVVTIHGLISSNKLDGSTGGDS-TVKCTPCTRYNPPP 60

Query: 61  PPPPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFG 120
           PPPPPPKKP  +YCPPPPPPPSSFIY+LGPPGNLYPI +DFAG  RRRVAVEL  VAL G
Sbjct: 61  PPPPPPKKPPSSYCPPPPPPPSSFIYMLGPPGNLYPIGQDFAGG-RRRVAVELPVVALLG 118

Query: 121 LIGFLGV 126
           L+GF+ V
Sbjct: 121 LMGFIAV 118

[Close]

BLAST of CmoCh04G010810.1 vs. ExPASy TrEMBL
Match: A0A5C7HJP2 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_018540 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.7e-14
Identity = 59/114 (51.75%), Postives = 72/114 (63.16%), Query Frame = 0


Query: 29  HGFLSSKKLDESTGGDDPSVKCTPC---THNPPPPPPPPKKPSPAYCPPPPPPPS----- 88
           +G   S+KLDESTGG D  VKCTP    T +PPPP PPP  P P   PPPPPPP+     
Sbjct: 138 NGLNHSRKLDESTGGGDQGVKCTPSCIPTPSPPPPSPPPPCPPPPALPPPPPPPAAPKKP 197

Query: 89  ---------SFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLIGFLGV 126
                    SFIY+ GPPG+LYPID DF+GA RR++   +S++ L G +G LGV
Sbjct: 198 PTQYCPPPPSFIYMTGPPGDLYPIDSDFSGA-RRQLFSPISSI-LVGFVGLLGV 249

[Close]

BLAST of CmoCh04G010810.1 vs. ExPASy TrEMBL
Match: A0A6A3B336 (Extensin-like OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110325pilonHSYRG00114 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 3.5e-14
Identity = 67/131 (51.15%), Postives = 75/131 (57.25%), Query Frame = 0


Query: 12  FILSFFFFFLSTNVVLTHGFLSSKKLDESTGGDDPSVKCTP-CTHNPPP----------- 71
           F+ S   FF+ T        L S+KLDEST   D  VKCTP C  +PPP           
Sbjct: 8   FLPSVTIFFVITTFAYPINGLESRKLDESTVPGDQGVKCTPSCIQSPPPPPPSPPPACPP 67

Query: 72  ----PPPPPKKPSPAYCPPPPPPPS--SFIYILGPPGNLYPIDRDFAGADRRRVAVELSA 123
               PPP PKKP   YCPPPP PPS  S+IYI GPPGNLYP D+ F GAD R VAV L A
Sbjct: 68  PPALPPPTPKKPPTQYCPPPPVPPSPPSYIYITGPPGNLYPTDQSFGGAD-RNVAVGLLA 127

[Close]

BLAST of CmoCh04G010810.1 vs. NCBI nr
Match: XP_022942055.1 (probable glycosyltransferase 4 [Cucurbita moschata])

HSP 1 Score: 245.0 bits (624), Expect = 3.5e-61
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MCIQTRPRYALFILSFFFFFLSTNVVLTHGFLSSKKLDESTGGDDPSVKCTPCTHNPPPP 60
           MCIQTRPRYALFILSFFFFFLSTNVVLTHGFLSSKKLDESTGGDDPSVKCTPCTHNPPPP
Sbjct: 1   MCIQTRPRYALFILSFFFFFLSTNVVLTHGFLSSKKLDESTGGDDPSVKCTPCTHNPPPP 60

Query: 61  PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLI 120
           PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLI
Sbjct: 61  PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLI 120

Query: 121 GFLGV 126
           GFLGV
Sbjct: 121 GFLGV 125

[Close]

BLAST of CmoCh04G010810.1 vs. NCBI nr
Match: XP_023546806.1 (formin-like protein 20 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 238.8 bits (608), Expect = 2.5e-59
Identity = 122/125 (97.60%), Postives = 122/125 (97.60%), Query Frame = 0


Query: 1   MCIQTRPRYALFILSFFFFFLSTNVVLTHGFLSSKKLDESTGGDDPSVKCTPCTHNPPPP 60
           MCIQTRPRYALFI SFF FFLS NVVLTHGFLSSKKLDESTGGDDPSVKCTPCTHNPPPP
Sbjct: 1   MCIQTRPRYALFIFSFFIFFLSINVVLTHGFLSSKKLDESTGGDDPSVKCTPCTHNPPPP 60

Query: 61  PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLI 120
           PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLI
Sbjct: 61  PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLI 120

Query: 121 GFLGV 126
           GFLGV
Sbjct: 121 GFLGV 125

[Close]

BLAST of CmoCh04G010810.1 vs. NCBI nr
Match: KAG6600825.1 (hypothetical protein SDJN03_06058, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 228.4 bits (581), Expect = 3.4e-56
Identity = 119/125 (95.20%), Postives = 119/125 (95.20%), Query Frame = 0


Query: 1   MCIQTRPRYALFILSFFFFFLSTNVVLTHGFLSSKKLDESTGGDDPSVKCTPCTHNPPPP 60
           MCIQTRPRYALFI S FFF LS NVVLTHGFLSSKKLDESTGGDDP VKCTPCTHNPPPP
Sbjct: 1   MCIQTRPRYALFIFS-FFFVLSINVVLTHGFLSSKKLDESTGGDDPRVKCTPCTHNPPPP 60

Query: 61  PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLI 120
           PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRV VELSAVALFGLI
Sbjct: 61  PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVVVELSAVALFGLI 120

Query: 121 GFLGV 126
           GFLGV
Sbjct: 121 GFLGV 124

[Close]

BLAST of CmoCh04G010810.1 vs. NCBI nr
Match: KAG7031461.1 (hypothetical protein SDJN02_05501, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 226.1 bits (575), Expect = 1.7e-55
Identity = 118/125 (94.40%), Postives = 118/125 (94.40%), Query Frame = 0


Query: 1   MCIQTRPRYALFILSFFFFFLSTNVVLTHGFLSSKKLDESTGGDDPSVKCTPCTHNPPPP 60
           MCIQTRPRYALFI S F F LS NVVLTHGFLSSKKLDESTGGDDP VKCTPCTHNPPPP
Sbjct: 1   MCIQTRPRYALFIFS-FLFVLSINVVLTHGFLSSKKLDESTGGDDPRVKCTPCTHNPPPP 60

Query: 61  PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLI 120
           PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRV VELSAVALFGLI
Sbjct: 61  PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVVVELSAVALFGLI 120

Query: 121 GFLGV 126
           GFLGV
Sbjct: 121 GFLGV 124

[Close]

BLAST of CmoCh04G010810.1 vs. NCBI nr
Match: KGN50831.1 (hypothetical protein Csa_004723 [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 1.2e-32
Identity = 84/125 (67.20%), Postives = 92/125 (73.60%), Query Frame = 0


Query: 1   MCIQTRPRYALFILSFFFFFLSTNVVLTHGFLSSKKLDESTGGDDPSVKCTPCTHNPPPP 60
           MCIQ  P Y+L IL  FF  LS N+   HGF+SSKKLDE     D SVKCTPCT   PPP
Sbjct: 1   MCIQPHPFYSLLIL-HFFLILSINLQPIHGFISSKKLDEPIPRHDSSVKCTPCTRYSPPP 60

Query: 61  PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLI 120
           PPPPKKP P YCPPPP PPSSFIY+LGPP NLYPI+ DFA ADRR VA+EL  VA FGLI
Sbjct: 61  PPPPKKPPPIYCPPPPLPPSSFIYMLGPPVNLYPIEHDFASADRRSVAMELPVVAFFGLI 120

Query: 121 GFLGV 126
           G + +
Sbjct: 121 GLIAL 124

[Close]

BLAST of CmoCh04G010810.1 vs. TAIR 10
Match: AT1G23040.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 76.6 bits (187), Expect = 1.5e-14
Identity = 51/110 (46.36%), Postives = 65/110 (59.09%), Query Frame = 0


Query: 32  LSSKKLDESTGGDDPSVKCTP-CTHNPPPPPPPPKKPSPAYCPP---------------- 91
           L ++KLDE     DP +KC+P C  NPPPP PPP  P P  CPP                
Sbjct: 38  LEARKLDEV----DP-IKCSPSCIQNPPPPSPPPPSPPPPACPPPPALPPPPPKKVSSYC 97

Query: 92  PPPPPSSFIYILGPPGNLYPIDRDF-AGADRRRVAVELSAVALFGLIGFL 124
           PPPPP++F+YI GPPGNLYP+D  F A A +  + V+LS +  FG++ FL
Sbjct: 98  PPPPPANFLYITGPPGNLYPVDEQFGAAAGKSFMVVKLSGLIAFGIMAFL 142

[Close]

BLAST of CmoCh04G010810.1 vs. TAIR 10
Match: AT1G70990.1 (proline-rich family protein )

HSP 1 Score: 68.9 bits (167), Expect = 3.2e-12
Identity = 51/120 (42.50%), Postives = 68/120 (56.67%), Query Frame = 0


Query: 21  LSTNVVLTHGFLSSKKLDESTGG--DDPSVKCTPCTHN-PPPPPPPPKKPSPAY-CPPP- 80
           L+T V LT   + +   D ST    ++  +KCTPC  N PPP PPPP  P P+  CPPP 
Sbjct: 54  LTTVVFLTFPMIINAS-DSSTNRKLEEDPIKCTPCLQNIPPPSPPPPSPPPPSQACPPPP 113

Query: 81  -----------PPPPSSFIYILGPPGNLYPIDRDF-AGADRRRVAVELSAVALFGLIGFL 124
                      PPPPS++IY+ GPPG LYPID+ F A   +    V++S +  FG++ FL
Sbjct: 114 LPPSPPKKSYCPPPPSTYIYMTGPPGELYPIDQQFGAAVTKSFTVVKISGLIAFGVMSFL 172

[Close]

BLAST of CmoCh04G010810.1 vs. TAIR 10
Match: AT1G02405.1 (proline-rich family protein )

HSP 1 Score: 44.3 bits (103), Expect = 8.5e-05
Identity = 40/84 (47.62%), Postives = 49/84 (58.33%), Query Frame = 0


Query: 46  PSVKCTPCTHNPPPP-PPPPKKPS--PAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGA 105
           PS     CT +PPPP PPPPKK S  P+  PPPPPPP        PPG+LYPI+  +  A
Sbjct: 53  PSPPPPSCTPSPPPPSPPPPKKSSCPPSPLPPPPPPPPPNYVFTYPPGDLYPIENYYGAA 112

Query: 106 DRRRVAVELSAVA---LFGLIGFL 124
               VAVE  +V    +FG++ FL
Sbjct: 113 ----VAVESFSVMKLFVFGVMVFL 132

The following BLAST results are available for this feature:

BLAST of CmoCh04G010810.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh04G010810.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FVH5	1.7e-61	100.00	probable glycosyltransferase 4 OS=Cucurbita moschata OX=3662 GN=LOC111447243 PE=...	[more]
A0A0A0KSV7	5.7e-33	67.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G283490 PE=4 SV=1	[more]
A0A6J1DRJ1	5.9e-30	66.93	acrosin-like OS=Momordica charantia OX=3673 GN=LOC111022525 PE=4 SV=1	[more]
A0A5C7HJP2	2.7e-14	51.75	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_018540 PE=4 SV=1	[more]
A0A6A3B336	3.5e-14	51.15	Extensin-like OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110325pilonHSYRG00114...	[more]

BLAST of CmoCh04G010810.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022942055.1	3.5e-61	100.00	probable glycosyltransferase 4 [Cucurbita moschata]	[more]
XP_023546806.1	2.5e-59	97.60	formin-like protein 20 [Cucurbita pepo subsp. pepo]	[more]
KAG6600825.1	3.4e-56	95.20	hypothetical protein SDJN03_06058, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7031461.1	1.7e-55	94.40	hypothetical protein SDJN02_05501, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KGN50831.1	1.2e-32	67.20	hypothetical protein Csa_004723 [Cucumis sativus]	[more]

BLAST of CmoCh04G010810.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G23040.1	1.5e-14	46.36	hydroxyproline-rich glycoprotein family protein	[more]
AT1G70990.1	3.2e-12	42.50	proline-rich family protein	[more]
AT1G02405.1	8.5e-05	47.62	proline-rich family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..74
None	No IPR available	PANTHER	PTHR35094	LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 2	coord: 3..123
None	No IPR available	PANTHER	PTHR35094:SF1	LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 2	coord: 3..123

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh04G010810	CmoCh04G010810	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G010810.1:exon:5265	CmoCh04G010810.1:exon:5265	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G010810.1:cds	CmoCh04G010810.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh04G010810.1	CmoCh04G010810.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0016740	transferase activity