CmoCh04G010130.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G010130.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr04: 5088491 .. 5089098 (+)
Sequence length	438
RNA-Seq Expression	CmoCh04G010130.1
Synteny	CmoCh04G010130.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAACTCGGCCATCTCCAGAATCTGCACCCAGAAGCAGGTGGATCAGGATCACAGTAGCTGGACTTCCTCCATGGACGACCTCCTCTTATTCGACCACTCTAAAACAATTTCATATCACTTTCAAAACGCCGCCGTCTTTTCTTCCTCCGATGACGACGATCTCCAAGACACTGCAACTTCTCCGCCTCATCCTTCCATAATTTCCGACGTACATTACATTCTCAGCTATATAAATTATCATCCAAAACTTCTGTTTACATCTTTTAAAAACTGGGTTTTTTGTTTTGAATCAGATGGATGGGCTTAGCTCCAAGCAAAAGAAGCAGCTGCAGCAGCAGCAGCTCAGTGCCATGATCAATCAAACAAAACACAAAGTTTGTAATTTTTTTAGTGTTTTTACATTAAAAATCCATTCTTTGATGCAATTTTAACTGTGATTTTGGGGTTTTGGTTTTGTAGGGAAAAGAAATTGAGGAATTTGGGGAAGTTGAAGATAGAATTGAAGTGGGTTTTGTGGGGAGGGATAATAATTGTAGCACAGGGCTCAAGAACATTGGCCTTTGCTTGGTTCCTGTATCCATGGCTATCAATTATTTTGGTTAG

mRNA sequence

ATGGAAAACTCGGCCATCTCCAGAATCTGCACCCAGAAGCAGGTGGATCAGGATCACAGTAGCTGGACTTCCTCCATGGACGACCTCCTCTTATTCGACCACTCTAAAACAATTTCATATCACTTTCAAAACGCCGCCGTCTTTTCTTCCTCCGATGACGACGATCTCCAAGACACTGCAACTTCTCCGCCTCATCCTTCCATAATTTCCGACATGGATGGGCTTAGCTCCAAGCAAAAGAAGCAGCTGCAGCAGCAGCAGCTCAGTGCCATGATCAATCAAACAAAACACAAAGGAAAAGAAATTGAGGAATTTGGGGAAGTTGAAGATAGAATTGAAGTGGGTTTTGTGGGGAGGGATAATAATTGTAGCACAGGGCTCAAGAACATTGGCCTTTGCTTGGTTCCTGTATCCATGGCTATCAATTATTTTGGTTAG

Coding sequence (CDS)

ATGGAAAACTCGGCCATCTCCAGAATCTGCACCCAGAAGCAGGTGGATCAGGATCACAGTAGCTGGACTTCCTCCATGGACGACCTCCTCTTATTCGACCACTCTAAAACAATTTCATATCACTTTCAAAACGCCGCCGTCTTTTCTTCCTCCGATGACGACGATCTCCAAGACACTGCAACTTCTCCGCCTCATCCTTCCATAATTTCCGACATGGATGGGCTTAGCTCCAAGCAAAAGAAGCAGCTGCAGCAGCAGCAGCTCAGTGCCATGATCAATCAAACAAAACACAAAGGAAAAGAAATTGAGGAATTTGGGGAAGTTGAAGATAGAATTGAAGTGGGTTTTGTGGGGAGGGATAATAATTGTAGCACAGGGCTCAAGAACATTGGCCTTTGCTTGGTTCCTGTATCCATGGCTATCAATTATTTTGGTTAG

Protein sequence

MENSAISRICTQKQVDQDHSSWTSSMDDLLLFDHSKTISYHFQNAAVFSSSDDDDLQDTATSPPHPSIISDMDGLSSKQKKQLQQQQLSAMINQTKHKGKEIEEFGEVEDRIEVGFVGRDNNCSTGLKNIGLCLVPVSMAINYFG

Homology

[Close]

BLAST of CmoCh04G010130.1 vs. ExPASy TrEMBL
Match: A0A6J1FU25 (uncharacterized protein LOC111446888 OS=Cucurbita moschata OX=3662 GN=LOC111446888 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 4.5e-74
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MENSAISRICTQKQVDQDHSSWTSSMDDLLLFDHSKTISYHFQNAAVFSSSDDDDLQDTA 60
           MENSAISRICTQKQVDQDHSSWTSSMDDLLLFDHSKTISYHFQNAAVFSSSDDDDLQDTA
Sbjct: 1   MENSAISRICTQKQVDQDHSSWTSSMDDLLLFDHSKTISYHFQNAAVFSSSDDDDLQDTA 60

Query: 61  TSPPHPSIISDMDGLSSKQKKQLQQQQLSAMINQTKHKGKEIEEFGEVEDRIEVGFVGRD 120
           TSPPHPSIISDMDGLSSKQKKQLQQQQLSAMINQTKHKGKEIEEFGEVEDRIEVGFVGRD
Sbjct: 61  TSPPHPSIISDMDGLSSKQKKQLQQQQLSAMINQTKHKGKEIEEFGEVEDRIEVGFVGRD 120

Query: 121 NNCSTGLKNIGLCLVPVSMAINYFG 146
           NNCSTGLKNIGLCLVPVSMAINYFG
Sbjct: 121 NNCSTGLKNIGLCLVPVSMAINYFG 145

[Close]

BLAST of CmoCh04G010130.1 vs. ExPASy TrEMBL
Match: A0A6J1JN91 (uncharacterized protein LOC111486825 OS=Cucurbita maxima OX=3661 GN=LOC111486825 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.1e-67
Identity = 138/146 (94.52%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MENSAISRICTQKQVDQDHSSWTSSMDDLLLFDHSKTISYHFQNAAVFSSS-DDDDLQDT 60
           MENSAIS+ICTQKQVDQDHSSWTSSMDDLLLFD+SKT SYHFQNAAVFSSS DDDDLQDT
Sbjct: 1   MENSAISKICTQKQVDQDHSSWTSSMDDLLLFDYSKTTSYHFQNAAVFSSSDDDDDLQDT 60

Query: 61  ATSPPHPSIISDMDGLSSKQKKQLQQQQLSAMINQTKHKGKEIEEFGEVEDRIEVGFVGR 120
           ATSPPHPSIISDMDGLSSKQKKQ QQQQ +AMINQTKH+GKEIEEFGEVEDRIEVGFVGR
Sbjct: 61  ATSPPHPSIISDMDGLSSKQKKQ-QQQQHTAMINQTKHRGKEIEEFGEVEDRIEVGFVGR 120

Query: 121 DNNCSTGLKNIGLCLVPVSMAINYFG 146
           DNNCSTGLKNIGLCLVPVSMAINYFG
Sbjct: 121 DNNCSTGLKNIGLCLVPVSMAINYFG 145

[Close]

BLAST of CmoCh04G010130.1 vs. ExPASy TrEMBL
Match: A0A0A0L2F7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G078270 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 8.6e-33
Identity = 99/180 (55.00%), Postives = 116/180 (64.44%), Query Frame = 0


Query: 1   MENSAISRICTQKQVD------QDHSSW--TSSMDDLLLFDHSKTI---SYH-FQNAAVF 60
           MENSA SRIC+ ++ D       +  SW  +SSMDDLL+FD   T    SY  FQ +   
Sbjct: 1   MENSATSRICSHREEDTCEPMFHEDRSWSTSSSMDDLLMFDVRTTTHSSSYESFQTSLCC 60

Query: 61  SS--------------------SDDDDLQDTATSPPHPSIISDMDGLSSKQKKQLQQQQL 120
           SS                    + DDDL+DTATSPPHPSI+S MD  SSKQ+K+ +    
Sbjct: 61  SSAVDGGAQPSASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDERSSKQQKKQR---- 120

Query: 121 SAMINQTKHKGKEIEEFGEVEDRI-EVGFVGRDNN---CSTGLKNIGLCLVPVSMAINYF 145
            AM+NQTKHKG   E++GEVEDRI EVGFVGRDNN   CSTGLKNIGLCLVPVSMA+NYF
Sbjct: 121 -AMMNQTKHKGNGSEDYGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALNYF 175

[Close]

BLAST of CmoCh04G010130.1 vs. ExPASy TrEMBL
Match: A0A5D3BKS2 (Putative CTD small phosphatase-like protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00160 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 4.3e-32
Identity = 98/180 (54.44%), Postives = 114/180 (63.33%), Query Frame = 0


Query: 1   MENSAISRICTQKQVDQ------DHSSW--TSSMDDLLLFDHSKTI---SYHFQNAAVFS 60
           MENSA SRIC+  + D+      +  SW  +SSMDDLL+FD   TI   SY F    +  
Sbjct: 1   MENSANSRICSHGEEDRCEATFHEDPSWSTSSSMDDLLMFDVRSTIHSSSYEFFQTRLCC 60

Query: 61  SS---------------------DDDDLQDTATSPPHPSIISDMDGLSSKQKKQLQQQQL 120
           SS                      DDDL+DTATSPPHPSI+S MD  SSKQ+K+ +    
Sbjct: 61  SSAVDGGAQASASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDEPSSKQQKKQR---- 120

Query: 121 SAMINQTKHKGKEIEEFGEVEDR-IEVGFVGRDNN---CSTGLKNIGLCLVPVSMAINYF 145
            A INQTKHKGK  E++GEVEDR I+VG VGRDNN   CSTGLKNIGLCLVPVSMA+NYF
Sbjct: 121 -ATINQTKHKGKGSEDYGEVEDRIIQVGVVGRDNNKNYCSTGLKNIGLCLVPVSMALNYF 175

[Close]

BLAST of CmoCh04G010130.1 vs. ExPASy TrEMBL
Match: A0A1S3CKU1 (uncharacterized protein LOC103501601 OS=Cucumis melo OX=3656 GN=LOC103501601 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 4.3e-32
Identity = 98/180 (54.44%), Postives = 114/180 (63.33%), Query Frame = 0


Query: 1   MENSAISRICTQKQVDQ------DHSSW--TSSMDDLLLFDHSKTI---SYHFQNAAVFS 60
           MENSA SRIC+  + D+      +  SW  +SSMDDLL+FD   TI   SY F    +  
Sbjct: 1   MENSANSRICSHGEEDRCEATFHEDPSWSTSSSMDDLLMFDVRSTIHSSSYEFFQTRLCC 60

Query: 61  SS---------------------DDDDLQDTATSPPHPSIISDMDGLSSKQKKQLQQQQL 120
           SS                      DDDL+DTATSPPHPSI+S MD  SSKQ+K+ +    
Sbjct: 61  SSAVDGGAQASASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDEPSSKQQKKQR---- 120

Query: 121 SAMINQTKHKGKEIEEFGEVEDR-IEVGFVGRDNN---CSTGLKNIGLCLVPVSMAINYF 145
            A INQTKHKGK  E++GEVEDR I+VG VGRDNN   CSTGLKNIGLCLVPVSMA+NYF
Sbjct: 121 -ATINQTKHKGKGSEDYGEVEDRIIQVGVVGRDNNKNYCSTGLKNIGLCLVPVSMALNYF 175

[Close]

BLAST of CmoCh04G010130.1 vs. NCBI nr
Match: XP_022941575.1 (uncharacterized protein LOC111446888 [Cucurbita moschata])

HSP 1 Score: 287.0 bits (733), Expect = 9.3e-74
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MENSAISRICTQKQVDQDHSSWTSSMDDLLLFDHSKTISYHFQNAAVFSSSDDDDLQDTA 60
           MENSAISRICTQKQVDQDHSSWTSSMDDLLLFDHSKTISYHFQNAAVFSSSDDDDLQDTA
Sbjct: 1   MENSAISRICTQKQVDQDHSSWTSSMDDLLLFDHSKTISYHFQNAAVFSSSDDDDLQDTA 60

Query: 61  TSPPHPSIISDMDGLSSKQKKQLQQQQLSAMINQTKHKGKEIEEFGEVEDRIEVGFVGRD 120
           TSPPHPSIISDMDGLSSKQKKQLQQQQLSAMINQTKHKGKEIEEFGEVEDRIEVGFVGRD
Sbjct: 61  TSPPHPSIISDMDGLSSKQKKQLQQQQLSAMINQTKHKGKEIEEFGEVEDRIEVGFVGRD 120

Query: 121 NNCSTGLKNIGLCLVPVSMAINYFG 146
           NNCSTGLKNIGLCLVPVSMAINYFG
Sbjct: 121 NNCSTGLKNIGLCLVPVSMAINYFG 145

[Close]

BLAST of CmoCh04G010130.1 vs. NCBI nr
Match: KAG7031402.1 (hypothetical protein SDJN02_05442, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 281.2 bits (718), Expect = 5.1e-72
Identity = 142/145 (97.93%), Postives = 143/145 (98.62%), Query Frame = 0


Query: 1   MENSAISRICTQKQVDQDHSSWTSSMDDLLLFDHSKTISYHFQNAAVFSSSDDDDLQDTA 60
           MENSAISRICTQKQVD+DHSSWTSSMDDLLLFDHSKTISYH QNAAVFSSSDDDDLQDTA
Sbjct: 1   MENSAISRICTQKQVDEDHSSWTSSMDDLLLFDHSKTISYHIQNAAVFSSSDDDDLQDTA 60

Query: 61  TSPPHPSIISDMDGLSSKQKKQLQQQQLSAMINQTKHKGKEIEEFGEVEDRIEVGFVGRD 120
           TSPPHPSIISDMDGLSSKQKKQ QQQQLSAMINQTKHKGKEIEEFGEVEDRIEVGFVGRD
Sbjct: 61  TSPPHPSIISDMDGLSSKQKKQQQQQQLSAMINQTKHKGKEIEEFGEVEDRIEVGFVGRD 120

Query: 121 NNCSTGLKNIGLCLVPVSMAINYFG 146
           NNCSTGLKNIGLCLVPVSMAINYFG
Sbjct: 121 NNCSTGLKNIGLCLVPVSMAINYFG 145

[Close]

BLAST of CmoCh04G010130.1 vs. NCBI nr
Match: KAG6600765.1 (hypothetical protein SDJN03_05998, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 276.2 bits (705), Expect = 1.6e-70
Identity = 142/147 (96.60%), Postives = 143/147 (97.28%), Query Frame = 0


Query: 1   MENSAISRICTQKQVDQDHSSWTSSMDDLLLFDHSKTISYHFQNAAVFSSSDDDDLQDTA 60
           MENSAISRICTQKQVD+DHSSWTSSMDDLLLFDHSKTISYH QNAAVFSSSDDDDLQDTA
Sbjct: 1   MENSAISRICTQKQVDEDHSSWTSSMDDLLLFDHSKTISYHIQNAAVFSSSDDDDLQDTA 60

Query: 61  TSPPHPSIISDMDGLSSKQKK--QLQQQQLSAMINQTKHKGKEIEEFGEVEDRIEVGFVG 120
           TSPPHPSIISDMDGLSSKQKK  Q QQQQLSAMINQTKHKGKEIEEFGEVEDRIEVGFVG
Sbjct: 61  TSPPHPSIISDMDGLSSKQKKQQQQQQQQLSAMINQTKHKGKEIEEFGEVEDRIEVGFVG 120

Query: 121 RDNNCSTGLKNIGLCLVPVSMAINYFG 146
           RDNNCSTGLKNIGLCLVPVSMAINYFG
Sbjct: 121 RDNNCSTGLKNIGLCLVPVSMAINYFG 147

[Close]

BLAST of CmoCh04G010130.1 vs. NCBI nr
Match: XP_022989755.1 (uncharacterized protein LOC111486825 [Cucurbita maxima])

HSP 1 Score: 265.8 bits (678), Expect = 2.2e-67
Identity = 138/146 (94.52%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MENSAISRICTQKQVDQDHSSWTSSMDDLLLFDHSKTISYHFQNAAVFSSS-DDDDLQDT 60
           MENSAIS+ICTQKQVDQDHSSWTSSMDDLLLFD+SKT SYHFQNAAVFSSS DDDDLQDT
Sbjct: 1   MENSAISKICTQKQVDQDHSSWTSSMDDLLLFDYSKTTSYHFQNAAVFSSSDDDDDLQDT 60

Query: 61  ATSPPHPSIISDMDGLSSKQKKQLQQQQLSAMINQTKHKGKEIEEFGEVEDRIEVGFVGR 120
           ATSPPHPSIISDMDGLSSKQKKQ QQQQ +AMINQTKH+GKEIEEFGEVEDRIEVGFVGR
Sbjct: 61  ATSPPHPSIISDMDGLSSKQKKQ-QQQQHTAMINQTKHRGKEIEEFGEVEDRIEVGFVGR 120

Query: 121 DNNCSTGLKNIGLCLVPVSMAINYFG 146
           DNNCSTGLKNIGLCLVPVSMAINYFG
Sbjct: 121 DNNCSTGLKNIGLCLVPVSMAINYFG 145

[Close]

BLAST of CmoCh04G010130.1 vs. NCBI nr
Match: XP_011652737.2 (uncharacterized protein LOC105435073 [Cucumis sativus] >KGN56145.1 hypothetical protein Csa_009500 [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 1.8e-32
Identity = 99/180 (55.00%), Postives = 116/180 (64.44%), Query Frame = 0


Query: 1   MENSAISRICTQKQVD------QDHSSW--TSSMDDLLLFDHSKTI---SYH-FQNAAVF 60
           MENSA SRIC+ ++ D       +  SW  +SSMDDLL+FD   T    SY  FQ +   
Sbjct: 1   MENSATSRICSHREEDTCEPMFHEDRSWSTSSSMDDLLMFDVRTTTHSSSYESFQTSLCC 60

Query: 61  SS--------------------SDDDDLQDTATSPPHPSIISDMDGLSSKQKKQLQQQQL 120
           SS                    + DDDL+DTATSPPHPSI+S MD  SSKQ+K+ +    
Sbjct: 61  SSAVDGGAQPSASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDERSSKQQKKQR---- 120

Query: 121 SAMINQTKHKGKEIEEFGEVEDRI-EVGFVGRDNN---CSTGLKNIGLCLVPVSMAINYF 145
            AM+NQTKHKG   E++GEVEDRI EVGFVGRDNN   CSTGLKNIGLCLVPVSMA+NYF
Sbjct: 121 -AMMNQTKHKGNGSEDYGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALNYF 175

The following BLAST results are available for this feature:

BLAST of CmoCh04G010130.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh04G010130.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FU25	4.5e-74	100.00	uncharacterized protein LOC111446888 OS=Cucurbita moschata OX=3662 GN=LOC1114468...	[more]
A0A6J1JN91	1.1e-67	94.52	uncharacterized protein LOC111486825 OS=Cucurbita maxima OX=3661 GN=LOC111486825...	[more]
A0A0A0L2F7	8.6e-33	55.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G078270 PE=4 SV=1	[more]
A0A5D3BKS2	4.3e-32	54.44	Putative CTD small phosphatase-like protein 2 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3CKU1	4.3e-32	54.44	uncharacterized protein LOC103501601 OS=Cucumis melo OX=3656 GN=LOC103501601 PE=...	[more]

BLAST of CmoCh04G010130.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941575.1	9.3e-74	100.00	uncharacterized protein LOC111446888 [Cucurbita moschata]	[more]
KAG7031402.1	5.1e-72	97.93	hypothetical protein SDJN02_05442, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6600765.1	1.6e-70	96.60	hypothetical protein SDJN03_05998, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022989755.1	2.2e-67	94.52	uncharacterized protein LOC111486825 [Cucurbita maxima]	[more]
XP_011652737.2	1.8e-32	55.00	uncharacterized protein LOC105435073 [Cucumis sativus] >KGN56145.1 hypothetical ...	[more]

BLAST of CmoCh04G010130.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..76
None	No IPR available	PANTHER	PTHR33974:SF2	VASCULAR-RELATED UNKNOWN PROTEIN 1-RELATED	coord: 51..145
IPR039280	VASCULAR-RELATED UNKNOWN PROTEIN	PANTHER	PTHR33974	VASCULAR-RELATED UNKNOWN PROTEIN 1-RELATED	coord: 51..145

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh04G010130	CmoCh04G010130	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G010130.1:exon:5092	CmoCh04G010130.1:exon:5092	exon
CmoCh04G010130.1:exon:5093	CmoCh04G010130.1:exon:5093	exon
CmoCh04G010130.1:exon:5094	CmoCh04G010130.1:exon:5094	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G010130.1:cds	CmoCh04G010130.1:cds	CDS
CmoCh04G010130.1:cds	CmoCh04G010130.1:cds_2	CDS
CmoCh04G010130.1:cds	CmoCh04G010130.1:cds_3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh04G010130.1	CmoCh04G010130.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010089	xylem development