CmoCh03G011350.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh03G011350.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	vacuolar protein sorting-associated protein 55 homolog isoform X2
Location	Cmo_Chr03: 9058858 .. 9059939 (+)
Sequence length	556
RNA-Seq Expression	CmoCh03G011350.1
Synteny	CmoCh03G011350.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGCTAAGCATGTTTTCTCTGCAGCGTTGATGTACGTGCTCGTTCCAATGCCATGTTTATTTTTTGGAGGCGGGTCGACGCAGTTTCTGATTAGCCGAGACGGTGGAGGGTGAGTATCTCTTAAGCATTCATATTGAAAATAGGTTCTCTTCAATTAAATGAACTAACCTTATGGAGATATGCTTGTGTCATGGTTTTTGAGAAACACGATGTTCTTATTAATGATATCGTGATGCAAGTATATCGACAGTATTCATTATATCTCGTGGTGTCACCCCTTGCATGTTAGAAATCACGACTCTCCACGATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGGCGGCTTCCCAAAAGGCCTCATACCAATGGAGATAGTATTCCTCACTTATAAACCCGTGATCTTCCACTAAATTAACCAAGGTGGGACTCAGACCCAATAATCTTCGATCCTCAACATTCCATACACTCCCATCGATTAATTGTATCGGTTCATTTAGAAGTCCACATCATTGTGCTTACAAAGATTGAAAACGTAACAATACCAACACTTGAGTGCCTCGTCCTTCCCTTCGTGTTCTAACTTTTATCCTTCTTTCTGGCTGGTGTTCGTGTCGTTGCGACTTTCTAGATGGATAGGTGCTGCTAAGTTCTTGACGGGAGCGTCAACCGTTGGGAGTTTGGCAATTCCTATTATCCTGAGGCATGCTCAGATGATCGACACAGGAGCCATGTTCATAGAATTCGTTTCGTTCTTCATTTTTGTTTGCACTGTGTTGTGCCTCCACCGTGTTAGCCTTGAAGATGATTGGTGATCCCATATTAATTCCAGAAGATTACAACAATTTCTTGTGTTAAATTTTAATGCGTTTCTTTTGAACAGTCGATAACAAGAAGAAACTTGCAGTGGGGGAAAGGAAACCGAGTTCTAAGTTTCTCATATGTAAATCAATCTAATGTATGATAGTAGTTCTCTTTTTTTCTTCTTTTCTTATTATGTTCTATTAATGCTTGTGAATAGAAATAAATCAGTATTTGGTAAATTTTTATTTAGTTCATCACTTTTTAAGTTAA

mRNA sequence

ATGACTGCTAAGCATGTTTTCTCTGCAGCGTTGATGTACGTGCTCGTTCCAATGCCATGTTTATTTTTTGGAGGCGGGTCGACGCAGTTTCTGATTAGCCGAGACGGTGGAGGATGGATAGGTGCTGCTAAGTTCTTGACGGGAGCGTCAACCGTTGGGAGTTTGGCAATTCCTATTATCCTGAGGCATGCTCAGATGATCGACACAGGAGCCATGTTCATAGAATTCGTTTCGTTCTTCATTTTTGTTTGCACTGTGTTGTGCCTCCACCGTGTTAGCCTTGAAGATGATTGGTGATCCCATATTAATTCCAGAAGATTACAACAATTTCTTGTGTTAAATTTTAATGCGTTTCTTTTGAACAGTCGATAACAAGAAGAAACTTGCAGTGGGGGAAAGGAAACCGAGTTCTAAGTTTCTCATATGTAAATCAATCTAATGTATGATAGTAGTTCTCTTTTTTTCTTCTTTTCTTATTATGTTCTATTAATGCTTGTGAATAGAAATAAATCAGTATTTGGTAAATTTTTATTTAGTTCATCACTTTTTAAGTTAA

Coding sequence (CDS)

ATGACTGCTAAGCATGTTTTCTCTGCAGCGTTGATGTACGTGCTCGTTCCAATGCCATGTTTATTTTTTGGAGGCGGGTCGACGCAGTTTCTGATTAGCCGAGACGGTGGAGGATGGATAGGTGCTGCTAAGTTCTTGACGGGAGCGTCAACCGTTGGGAGTTTGGCAATTCCTATTATCCTGAGGCATGCTCAGATGATCGACACAGGAGCCATGTTCATAGAATTCGTTTCGTTCTTCATTTTTGTTTGCACTGTGTTGTGCCTCCACCGTGTTAGCCTTGAAGATGATTGGTGA

Protein sequence

MTAKHVFSAALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCTVLCLHRVSLEDDW

Homology

[Close]

BLAST of CmoCh03G011350.1 vs. ExPASy Swiss-Prot
Match: Q9AST6 (Vacuolar protein sorting-associated protein 55 homolog OS=Arabidopsis thaliana OX=3702 GN=At1g32410 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.1e-15
Identity = 40/79 (50.63%), Postives = 55/79 (69.62%), Query Frame = 0


Query: 9   AALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMID 68
           + +MYVL+PMP LFFGG  +  L +     WI AAKFLTGAS VGS+AIP IL+HA +I 
Sbjct: 46  SVIMYVLLPMPLLFFGGSDSTSLFNESDNSWINAAKFLTGASAVGSVAIPSILKHAGLIG 105

Query: 69  TGAMFIEFVSFFIFVCTVL 88
            GA+ ++  S+ +F+  +L
Sbjct: 106 WGALALDLSSYVVFLVAIL 124

[Close]

BLAST of CmoCh03G011350.1 vs. ExPASy TrEMBL
Match: A0A6J1EE43 (vacuolar protein sorting-associated protein 55 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111433349 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.4e-42
Identity = 89/90 (98.89%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 9   AALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMID 68
           +ALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMID
Sbjct: 108 SALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMID 167

Query: 69  TGAMFIEFVSFFIFVCTVLCLHRVSLEDDW 99
           TGAMFIEFVSFFIFVCTVLCLHRVSLEDDW
Sbjct: 168 TGAMFIEFVSFFIFVCTVLCLHRVSLEDDW 197

[Close]

BLAST of CmoCh03G011350.1 vs. ExPASy TrEMBL
Match: A0A6J1EDR9 (vacuolar protein sorting-associated protein 55 homolog isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111433349 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.4e-42
Identity = 89/90 (98.89%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 9   AALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMID 68
           +ALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMID
Sbjct: 24  SALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMID 83

Query: 69  TGAMFIEFVSFFIFVCTVLCLHRVSLEDDW 99
           TGAMFIEFVSFFIFVCTVLCLHRVSLEDDW
Sbjct: 84  TGAMFIEFVSFFIFVCTVLCLHRVSLEDDW 113

[Close]

BLAST of CmoCh03G011350.1 vs. ExPASy TrEMBL
Match: A0A6J1BUQ3 (vacuolar protein sorting-associated protein 55 homolog isoform X3 OS=Momordica charantia OX=3673 GN=LOC111005705 PE=3 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.5e-41
Identity = 87/90 (96.67%), Postives = 88/90 (97.78%), Query Frame = 0


Query: 9  AALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMID 68
          +ALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHA MID
Sbjct: 3  SALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMID 62

Query: 69 TGAMFIEFVSFFIFVCTVLCLHRVSLEDDW 99
          TGAMFIEFVSFFIFVCTVLC HRVSLEDDW
Sbjct: 63 TGAMFIEFVSFFIFVCTVLCFHRVSLEDDW 92

[Close]

BLAST of CmoCh03G011350.1 vs. ExPASy TrEMBL
Match: A0A0A0KHI6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G453780 PE=3 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.5e-41
Identity = 87/90 (96.67%), Postives = 88/90 (97.78%), Query Frame = 0


Query: 9   AALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMID 68
           +ALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHA MID
Sbjct: 37  SALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMID 96

Query: 69  TGAMFIEFVSFFIFVCTVLCLHRVSLEDDW 99
           TGAMFIEFVSFFIFVCTVLC HRVSLEDDW
Sbjct: 97  TGAMFIEFVSFFIFVCTVLCFHRVSLEDDW 126

[Close]

BLAST of CmoCh03G011350.1 vs. ExPASy TrEMBL
Match: A0A6J1BXT5 (vacuolar protein sorting-associated protein 55 homolog isoform X2 OS=Momordica charantia OX=3673 GN=LOC111005705 PE=3 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.5e-41
Identity = 87/90 (96.67%), Postives = 88/90 (97.78%), Query Frame = 0


Query: 9   AALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMID 68
           +ALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHA MID
Sbjct: 24  SALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMID 83

Query: 69  TGAMFIEFVSFFIFVCTVLCLHRVSLEDDW 99
           TGAMFIEFVSFFIFVCTVLC HRVSLEDDW
Sbjct: 84  TGAMFIEFVSFFIFVCTVLCFHRVSLEDDW 113

[Close]

BLAST of CmoCh03G011350.1 vs. NCBI nr
Match: XP_022926167.1 (vacuolar protein sorting-associated protein 55 homolog isoform X2 [Cucurbita moschata])

HSP 1 Score: 181.8 bits (460), Expect = 2.9e-42
Identity = 89/90 (98.89%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 9   AALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMID 68
           +ALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMID
Sbjct: 24  SALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMID 83

Query: 69  TGAMFIEFVSFFIFVCTVLCLHRVSLEDDW 99
           TGAMFIEFVSFFIFVCTVLCLHRVSLEDDW
Sbjct: 84  TGAMFIEFVSFFIFVCTVLCLHRVSLEDDW 113

[Close]

BLAST of CmoCh03G011350.1 vs. NCBI nr
Match: XP_022926166.1 (vacuolar protein sorting-associated protein 55 homolog isoform X1 [Cucurbita moschata])

HSP 1 Score: 181.8 bits (460), Expect = 2.9e-42
Identity = 89/90 (98.89%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 9   AALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMID 68
           +ALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMID
Sbjct: 108 SALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMID 167

Query: 69  TGAMFIEFVSFFIFVCTVLCLHRVSLEDDW 99
           TGAMFIEFVSFFIFVCTVLCLHRVSLEDDW
Sbjct: 168 TGAMFIEFVSFFIFVCTVLCLHRVSLEDDW 197

[Close]

BLAST of CmoCh03G011350.1 vs. NCBI nr
Match: XP_023543155.1 (vacuolar protein sorting-associated protein 55 homolog isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 180.3 bits (456), Expect = 8.3e-42
Identity = 88/90 (97.78%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 9   AALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMID 68
           +ALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMID
Sbjct: 24  SALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMID 83

Query: 69  TGAMFIEFVSFFIFVCTVLCLHRVSLEDDW 99
           TGAMFIEFVSFFIFVCTVLC HRVSLEDDW
Sbjct: 84  TGAMFIEFVSFFIFVCTVLCFHRVSLEDDW 113

[Close]

BLAST of CmoCh03G011350.1 vs. NCBI nr
Match: KAG6604338.1 (Vacuolar protein sorting-associated protein 55-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 180.3 bits (456), Expect = 8.3e-42
Identity = 88/90 (97.78%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 9   AALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMID 68
           +ALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMID
Sbjct: 114 SALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMID 173

Query: 69  TGAMFIEFVSFFIFVCTVLCLHRVSLEDDW 99
           TGAMFIEFVSFFIFVCTVLC HRVSLEDDW
Sbjct: 174 TGAMFIEFVSFFIFVCTVLCFHRVSLEDDW 203

[Close]

BLAST of CmoCh03G011350.1 vs. NCBI nr
Match: XP_023543153.1 (vacuolar protein sorting-associated protein 55 homolog isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 180.3 bits (456), Expect = 8.3e-42
Identity = 88/90 (97.78%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 9   AALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMID 68
           +ALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMID
Sbjct: 37  SALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMID 96

Query: 69  TGAMFIEFVSFFIFVCTVLCLHRVSLEDDW 99
           TGAMFIEFVSFFIFVCTVLC HRVSLEDDW
Sbjct: 97  TGAMFIEFVSFFIFVCTVLCFHRVSLEDDW 126

[Close]

BLAST of CmoCh03G011350.1 vs. TAIR 10
Match: AT3G11530.1 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 166.4 bits (420), Expect = 1.2e-41
Identity = 78/90 (86.67%), Postives = 85/90 (94.44%), Query Frame = 0


Query: 9   AALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMID 68
           +ALMYV+VPMPC+FFGGGSTQFLISRDGGGWI AAKFLTGASTVGSLAIPIILRHAQMI+
Sbjct: 24  SALMYVVVPMPCMFFGGGSTQFLISRDGGGWIDAAKFLTGASTVGSLAIPIILRHAQMIE 83

Query: 69  TGAMFIEFVSFFIFVCTVLCLHRVSLEDDW 99
           TGAM IEF SFFIF+CTV+C HR SL+DDW
Sbjct: 84  TGAMLIEFTSFFIFICTVMCFHRASLDDDW 113

[Close]

BLAST of CmoCh03G011350.1 vs. TAIR 10
Match: AT3G11530.2 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 166.4 bits (420), Expect = 1.2e-41
Identity = 78/90 (86.67%), Postives = 85/90 (94.44%), Query Frame = 0


Query: 9   AALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMID 68
           +ALMYV+VPMPC+FFGGGSTQFLISRDGGGWI AAKFLTGASTVGSLAIPIILRHAQMI+
Sbjct: 24  SALMYVVVPMPCMFFGGGSTQFLISRDGGGWIDAAKFLTGASTVGSLAIPIILRHAQMIE 83

Query: 69  TGAMFIEFVSFFIFVCTVLCLHRVSLEDDW 99
           TGAM IEF SFFIF+CTV+C HR SL+DDW
Sbjct: 84  TGAMLIEFTSFFIFICTVMCFHRASLDDDW 113

[Close]

BLAST of CmoCh03G011350.1 vs. TAIR 10
Match: AT1G32410.1 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 82.4 bits (202), Expect = 2.2e-16
Identity = 40/79 (50.63%), Postives = 55/79 (69.62%), Query Frame = 0


Query: 9   AALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMID 68
           + +MYVL+PMP LFFGG  +  L +     WI AAKFLTGAS VGS+AIP IL+HA +I 
Sbjct: 46  SVIMYVLLPMPLLFFGGSDSTSLFNESDNSWINAAKFLTGASAVGSVAIPSILKHAGLIG 105

Query: 69  TGAMFIEFVSFFIFVCTVL 88
            GA+ ++  S+ +F+  +L
Sbjct: 106 WGALALDLSSYVVFLVAIL 124

[Close]

BLAST of CmoCh03G011350.1 vs. TAIR 10
Match: AT1G32410.2 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 82.4 bits (202), Expect = 2.2e-16
Identity = 40/79 (50.63%), Postives = 55/79 (69.62%), Query Frame = 0


Query: 9   AALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMID 68
           + +MYVL+PMP LFFGG  +  L +     WI AAKFLTGAS VGS+AIP IL+HA +I 
Sbjct: 46  SVIMYVLLPMPLLFFGGSDSTSLFNESDNSWINAAKFLTGASAVGSVAIPSILKHAGLIG 105

Query: 69  TGAMFIEFVSFFIFVCTVL 88
            GA+ ++  S+ +F+  +L
Sbjct: 106 WGALALDLSSYVVFLVAIL 124

[Close]

BLAST of CmoCh03G011350.1 vs. TAIR 10
Match: AT1G32410.3 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 82.4 bits (202), Expect = 2.2e-16
Identity = 40/79 (50.63%), Postives = 55/79 (69.62%), Query Frame = 0


Query: 9   AALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMID 68
           + +MYVL+PMP LFFGG  +  L +     WI AAKFLTGAS VGS+AIP IL+HA +I 
Sbjct: 46  SVIMYVLLPMPLLFFGGSDSTSLFNESDNSWINAAKFLTGASAVGSVAIPSILKHAGLIG 105

Query: 69  TGAMFIEFVSFFIFVCTVL 88
            GA+ ++  S+ +F+  +L
Sbjct: 106 WGALALDLSSYVVFLVAIL 124

The following BLAST results are available for this feature:

BLAST of CmoCh03G011350.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9AST6	3.1e-15	50.63	Vacuolar protein sorting-associated protein 55 homolog OS=Arabidopsis thaliana O...	[more]

BLAST of CmoCh03G011350.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EE43	1.4e-42	98.89	vacuolar protein sorting-associated protein 55 homolog isoform X1 OS=Cucurbita m...	[more]
A0A6J1EDR9	1.4e-42	98.89	vacuolar protein sorting-associated protein 55 homolog isoform X2 OS=Cucurbita m...	[more]
A0A6J1BUQ3	1.5e-41	96.67	vacuolar protein sorting-associated protein 55 homolog isoform X3 OS=Momordica c...	[more]
A0A0A0KHI6	1.5e-41	96.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G453780 PE=3 SV=1	[more]
A0A6J1BXT5	1.5e-41	96.67	vacuolar protein sorting-associated protein 55 homolog isoform X2 OS=Momordica c...	[more]

BLAST of CmoCh03G011350.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022926167.1	2.9e-42	98.89	vacuolar protein sorting-associated protein 55 homolog isoform X2 [Cucurbita mos...	[more]
XP_022926166.1	2.9e-42	98.89	vacuolar protein sorting-associated protein 55 homolog isoform X1 [Cucurbita mos...	[more]
XP_023543155.1	8.3e-42	97.78	vacuolar protein sorting-associated protein 55 homolog isoform X2 [Cucurbita pep...	[more]
KAG6604338.1	8.3e-42	97.78	Vacuolar protein sorting-associated protein 55-like protein, partial [Cucurbita ...	[more]
XP_023543153.1	8.3e-42	97.78	vacuolar protein sorting-associated protein 55 homolog isoform X1 [Cucurbita pep...	[more]

BLAST of CmoCh03G011350.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G11530.1	1.2e-41	86.67	Vacuolar protein sorting 55 (VPS55) family protein	[more]
AT3G11530.2	1.2e-41	86.67	Vacuolar protein sorting 55 (VPS55) family protein	[more]
AT1G32410.1	2.2e-16	50.63	Vacuolar protein sorting 55 (VPS55) family protein	[more]
AT1G32410.2	2.2e-16	50.63	Vacuolar protein sorting 55 (VPS55) family protein	[more]
AT1G32410.3	2.2e-16	50.63	Vacuolar protein sorting 55 (VPS55) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007262	Vps55/LEPROT	PFAM	PF04133	Vps55	coord: 9..92 e-value: 8.0E-16 score: 58.0
IPR007262	Vps55/LEPROT	PANTHER	PTHR12050	LEPTIN RECEPTOR-RELATED	coord: 8..97
None	No IPR available	PANTHER	PTHR12050:SF0	RH04491P	coord: 8..97

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh03G011350	CmoCh03G011350	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh03G011350.1:exon:10105	CmoCh03G011350.1:exon:10105	exon
CmoCh03G011350.1:exon:10106	CmoCh03G011350.1:exon:10106	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh03G011350.1:cds	CmoCh03G011350.1:cds	CDS
CmoCh03G011350.1:cds	CmoCh03G011350.1:cds_2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh03G011350.1:three_prime_utr	CmoCh03G011350.1:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh03G011350.1	CmoCh03G011350.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane