CmoCh03G002960.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh03G002960.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Ubiquitin-conjugating enzyme E2 28
Location	Cmo_Chr03: 4179682 .. 4182859 (+)
Sequence length	1161
RNA-Seq Expression	CmoCh03G002960.1
Synteny	CmoCh03G002960.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGATTTGGGATCGCTATAAATATTTAAAGTCTTCTTTCATTGCTTAGCGATTGGCAAAGTTCTTCGGTCTCTAAAGTTTGTCAAATTCCACAAAAAATCAGAGGGTAAAGAGACCGACGAACAAGCAGCGGTTTCTGGGGGCCGCCATCGATCTGATTCGGAGCTTATTTCCCTTTCCATAGTTCTTTCCCGCCGATCCTGATCTTCATCCCCTTGTCGATCGCAAACCCTTTTGTTTTCTCAAGGTATTTCTATCATTTCCATCCGATTTTGTTGGTTTTTTTTTGTTAATCGCATATCCCTTTGTTTGCTCTGTTCTTAGCTTGATGGATTCTTTGAATCATCTCGTTTTCTAATCGATTTTATGTGTAGATCATGGCTTCGAAGCGTATCTTGAAGGAACTGAAGGATTTACAGAAGGATCCGCCCACATCTTGCAGCGCTGGTATGGTTCTAAGCTTTGATCTCTTTATTTGATGATCTATATTGACTATTTTCTTCCGATTTTATTGCTTTTTGTTGTGTTGATGTAACTGCTGAAGCCCACCTATATCAGATATAGTTCTCTTTAGACTTTCCCTTTCACGCTTTCCCTCGAGGTTCTTAGAACGTGTATGCTAGCGAGAGGTTTGGAGGTTTCCACACCCTTATGAAGGGTGTTTCGTTCTCCTCCCCGAGCGATATGGGATCTCACAATCCACGTTTTAGGGCCCAGCGTCCTCGCTGATACTCGTTCTTTTCTCTAATCGATGTGGGACTCCACCAAATCCATCCCTTTCGGGGAACAACCTTCTCGTTGGCACATCATCTGGTGTTTGGCTCTGATACCATTTGTAACGGCTCAAGCCCACCGCTAGCAGATATTGTCCTCTTTGAGTTTTTCCTTTCAGACTTCCCCTCAAGGTTTTTAAAAAGCGTTTGCTACCCCCTTATGAAGGGTGTTTAATTCTCCTCCCCAAACGATGTCGGATCTCAAAGTTGATTTCAATGAAGGAAGGAATGAATGAATGAATTTGTTTAGATCCTGTCTTGATGTGAACATGTTTTTTCTTTCCTAGTTTTGAGCTTGGGATGTTTTGTTTTTTGTTCTTTTTTTGTTTGTCTTTGCTTTTGAGGATAGGTCCTGTAGCTGAAGACATGTTCCATTGGCAAGCAACCATTATGGGACCATCTGATAGTCCTTATTCAGGAGGTGTTTTTCTAGTCAATATTCATTTCCCTCCAGATTATCCTTTCAAGCCTCCAAAGGTGAATGATGTTTGTCTTCTGTTTGTTGCTTTTAATGATCTGTGTAATATGATTATATGTTTCTTGTCTTGTTTTCGAGTAAATAGGATCGCGAGGTTTAATGATTGTGTTTTGTTGTTCAGGTTGCTTTTAGGACCAAAGTGTTTCACCCAAATATCAATAGCAATGGAAGCATTTGTCTCGACATCCTTAAAGAACAGTGGAGCCCCGCGCTTACGATTTCTAAGGTTCGTTTGGCGTTTTCTTGAATTCACCCTTGGCTTTTCGTTTGGTTTCTAAATCTGGATTGAGATTGTGTTGTTTGCATAGACATAGCTGTTTAATGTCGTGTTTGAGATCTATATGCTTCTGCCATTAGTGAAGTTATGTGTATCATCGATGCATACTCGTCTGAAGTTCCCTATTCGTATGGCTTAAAATTCACGACCTCGGTTGTATGGCTTAAAATCGTCATCGGATGGACGGCGTATTTCAATTTGTTCTTTTCGTTTTCTTGGGTGTCTGTTGTTTGATCACATAAACAATATGAACATTTCTTTGAGCCATGGTTTCTCTATGGAATTGGGAGGTCTTTTTTTGTTTGTTGGTATGTTGGGTCTCTGAGTCCTACCCATTGCATTGTACTTATGGTCTACACCCTACTAATTCGAGCGAACCGTTGTTAACTTGTGTTTCTACCCCAATAAGCGTTAAGGAAGTAATTGTGTCGTTAACCGCTCAAGCCTATTGTTAGCAGATATTATGCTCTTTCTGCGCTTCCCCTCAAGGTTTTAAAACGCGTCTACTAGGGAGAGTCTTTCACATCTTTATAAGGAAGGTTTTGTTCCCCTCTCCAACCGATGTGAGATCTCACAATCCATCCCCTCGGGGGGGCCAGCGTGGACTCTGGCACACCGCCTAGTGTTTGGTTTTGATACCATTTGTAACAGCCCAAGCCAACCGCTATTAGATATTGTCTTCTGGGCTTCGCTTAAGGTTTTAAAATGAGTCTACTTGGGAGAGGCTTCCACACTCTTGTAAGAAATGTTTCGTTCCTCTCTTCAACCAATGTGAGATCTCACAATCCATCCCCTTAGGGGCCCAGCGTTCTCGTTGGCACACCGCTCGGTATCTGACTCTAATACCATTTGTAACAGCCCAGCCCACCGCTAGTAGATATTGTCCTCTTTAAGCTTCTTCTCAAGGCTTTAAAATGCGTCTATTAGGGAGAGATTTTCACACCGTTATATGGAATGCTACACGTAGAAGCCCTCATTCTACCCACAATTCTAATAAAGAATAAGTTATATACCTTCACTATAACCTTTTGATCATTCAACAAAACCCCATTTCAGCAACGAACTCGCATTCATATCGACTTCGAACCAAATTCTAAACCTAACGATGTTCATGAAACAGGTCCTGCTCTCCATATGCTCATTGCTGACCGATCCAAACCCAGACGACCCTCTTGTACCAGAGATTGCACACATGTACAAGACCGACCGAGCCAAGTATGAAGCGAGCGCACGGAGCTGGACTCAGAAGTACGCAATGGGTTGAGACGGTATCGTAGCTTGGTGTCGGTGATGGATGACGCTGGTGGCGGTATCTTCGGCCTGCCATCCTTCTGTATTTCGTGGTTTCTCCAGTTATTTGGGCTGTGTAGGTACTTAAAACCAAAGAAACAAACAAGTCTTGTGGTTTTCTTCTCTTTGCCACTGGAATTTATGAATGAAAGATTCAAGCACTTTGTCAAATTAACTGGATTCAACATTCCTCTTCGTTGGAATTTCATTCAAGCAGTTATTTATCCCTTACAACAATTATTGTCCAATTTTTTTCTCTTTACAATTTTTTTTTGGGATTTTCTGTACTACGGTACGTTCTTCGTTCGTCGTTCTTCGTTCTTGAGTTTGTTCGTTGTTGTTCGAGTTTGATTTTCA

mRNA sequence

ATGGAGGATTTGGGATCGCTATAAATATTTAAAGTCTTCTTTCATTGCTTAGCGATTGGCAAAGTTCTTCGGTCTCTAAAGTTTGTCAAATTCCACAAAAAATCAGAGGGTAAAGAGACCGACGAACAAGCAGCGGTTTCTGGGGGCCGCCATCGATCTGATTCGGAGCTTATTTCCCTTTCCATAGTTCTTTCCCGCCGATCCTGATCTTCATCCCCTTGTCGATCGCAAACCCTTTTGTTTTCTCAAGATCATGGCTTCGAAGCGTATCTTGAAGGAACTGAAGGATTTACAGAAGGATCCGCCCACATCTTGCAGCGCTGGTCCTGTAGCTGAAGACATGTTCCATTGGCAAGCAACCATTATGGGACCATCTGATAGTCCTTATTCAGGAGGTGTTTTTCTAGTCAATATTCATTTCCCTCCAGATTATCCTTTCAAGCCTCCAAAGGTGAATGATGTTTGTCTTCTGTTTGTTGCTTTTAATGATCTGTGTAATATGATTATATGTTTCTTGTCTTGTTTTCGAGTTGCTTTTAGGACCAAAGTGTTTCACCCAAATATCAATAGCAATGGAAGCATTTGTCTCGACATCCTTAAAGAACAGTGGAGCCCCGCGCTTACGATTTCTAAGGTCCTGCTCTCCATATGCTCATTGCTGACCGATCCAAACCCAGACGACCCTCTTGTACCAGAGATTGCACACATGTACAAGACCGACCGAGCCAAGTATGAAGCGAGCGCACGGAGCTGGACTCAGAAGTACGCAATGGGTTGAGACGGTATCGTAGCTTGGTGTCGGTGATGGATGACGCTGGTGGCGGTATCTTCGGCCTGCCATCCTTCTGTATTTCGTGGTTTCTCCAGTTATTTGGGCTGTGTAGGTACTTAAAACCAAAGAAACAAACAAGTCTTGTGGTTTTCTTCTCTTTGCCACTGGAATTTATGAATGAAAGATTCAAGCACTTTGTCAAATTAACTGGATTCAACATTCCTCTTCGTTGGAATTTCATTCAAGCAGTTATTTATCCCTTACAACAATTATTGTCCAATTTTTTTCTCTTTACAATTTTTTTTTGGGATTTTCTGTACTACGGTACGTTCTTCGTTCGTCGTTCTTCGTTCTTGAGTTTGTTCGTTGTTGTTCGAGTTTGATTTTCA

Coding sequence (CDS)

ATGGCTTCGAAGCGTATCTTGAAGGAACTGAAGGATTTACAGAAGGATCCGCCCACATCTTGCAGCGCTGGTCCTGTAGCTGAAGACATGTTCCATTGGCAAGCAACCATTATGGGACCATCTGATAGTCCTTATTCAGGAGGTGTTTTTCTAGTCAATATTCATTTCCCTCCAGATTATCCTTTCAAGCCTCCAAAGGTGAATGATGTTTGTCTTCTGTTTGTTGCTTTTAATGATCTGTGTAATATGATTATATGTTTCTTGTCTTGTTTTCGAGTTGCTTTTAGGACCAAAGTGTTTCACCCAAATATCAATAGCAATGGAAGCATTTGTCTCGACATCCTTAAAGAACAGTGGAGCCCCGCGCTTACGATTTCTAAGGTCCTGCTCTCCATATGCTCATTGCTGACCGATCCAAACCCAGACGACCCTCTTGTACCAGAGATTGCACACATGTACAAGACCGACCGAGCCAAGTATGAAGCGAGCGCACGGAGCTGGACTCAGAAGTACGCAATGGGTTGA

Protein sequence

MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVNDVCLLFVAFNDLCNMIICFLSCFRVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG

Homology

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BLAST of CmoCh03G002960.1 vs. ExPASy Swiss-Prot
Match: Q94F47 (Ubiquitin-conjugating enzyme E2 28 OS=Arabidopsis thaliana OX=3702 GN=UBC28 PE=1 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 1.2e-78
Identity = 144/174 (82.76%), Postives = 147/174 (84.48%), Query Frame = 0


Query: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDY 60
           MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLV IHFPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDY 60

Query: 61  PFKPPKVNDVCLLFVAFNDLCNMIICFLSCFRVAFRTKVFHPNINSNGSICLDILKEQWS 120
           PFKPPK                          VAFRTKVFHPN+NSNGSICLDILKEQWS
Sbjct: 61  PFKPPK--------------------------VAFRTKVFHPNVNSNGSICLDILKEQWS 120

Query: 121 PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 175
           PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE++ARSWTQKYAMG
Sbjct: 121 PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG 148

[Close]

BLAST of CmoCh03G002960.1 vs. ExPASy Swiss-Prot
Match: P35135 (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum OX=4081 PE=2 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 4.6e-78
Identity = 143/174 (82.18%), Postives = 147/174 (84.48%), Query Frame = 0


Query: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDY 60
           MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP+DSPY+GGVFLV+IHFPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPTDSPYAGGVFLVSIHFPPDY 60

Query: 61  PFKPPKVNDVCLLFVAFNDLCNMIICFLSCFRVAFRTKVFHPNINSNGSICLDILKEQWS 120
           PFKPPK                          VAFRTKVFHPNINSNGSICLDILKEQWS
Sbjct: 61  PFKPPK--------------------------VAFRTKVFHPNINSNGSICLDILKEQWS 120

Query: 121 PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 175
           PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE +ARSWTQKYAMG
Sbjct: 121 PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 148

[Close]

BLAST of CmoCh03G002960.1 vs. ExPASy Swiss-Prot
Match: P35131 (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana OX=3702 GN=UBC8 PE=1 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 6.0e-78
Identity = 143/174 (82.18%), Postives = 147/174 (84.48%), Query Frame = 0


Query: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDY 60
           MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP++SPYSGGVFLV IHFPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDY 60

Query: 61  PFKPPKVNDVCLLFVAFNDLCNMIICFLSCFRVAFRTKVFHPNINSNGSICLDILKEQWS 120
           PFKPPK                          VAFRTKVFHPNINSNGSICLDILKEQWS
Sbjct: 61  PFKPPK--------------------------VAFRTKVFHPNINSNGSICLDILKEQWS 120

Query: 121 PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 175
           PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEA+AR+WTQKYAMG
Sbjct: 121 PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARNWTQKYAMG 148

[Close]

BLAST of CmoCh03G002960.1 vs. ExPASy Swiss-Prot
Match: P35132 (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana OX=3702 GN=UBC9 PE=1 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 2.3e-77
Identity = 142/174 (81.61%), Postives = 146/174 (83.91%), Query Frame = 0


Query: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDY 60
           MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLV IHFPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDY 60

Query: 61  PFKPPKVNDVCLLFVAFNDLCNMIICFLSCFRVAFRTKVFHPNINSNGSICLDILKEQWS 120
           PFKPPK                          VAFRTKVFHPNINSNGSICLDILKEQWS
Sbjct: 61  PFKPPK--------------------------VAFRTKVFHPNINSNGSICLDILKEQWS 120

Query: 121 PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 175
           PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTD+ KYE++AR+WTQKYAMG
Sbjct: 121 PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARTWTQKYAMG 148

[Close]

BLAST of CmoCh03G002960.1 vs. ExPASy Swiss-Prot
Match: Q8S919 (Ubiquitin-conjugating enzyme E2 5B OS=Oryza sativa subsp. japonica OX=39947 GN=UBC5B PE=2 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 3.9e-77
Identity = 141/174 (81.03%), Postives = 146/174 (83.91%), Query Frame = 0


Query: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDY 60
           MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQAT+MGPSDSPY+GGVFLV IHFPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATLMGPSDSPYAGGVFLVTIHFPPDY 60

Query: 61  PFKPPKVNDVCLLFVAFNDLCNMIICFLSCFRVAFRTKVFHPNINSNGSICLDILKEQWS 120
           PFKPPK                          VA +TKVFHPNINSNGSICLDILKEQWS
Sbjct: 61  PFKPPK--------------------------VALKTKVFHPNINSNGSICLDILKEQWS 120

Query: 121 PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 175
           PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE++ARSWTQKYAMG
Sbjct: 121 PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG 148

[Close]

BLAST of CmoCh03G002960.1 vs. ExPASy TrEMBL
Match: A0A3Q7JWU4 (UBC core domain-containing protein OS=Solanum lycopersicum OX=4081 PE=3 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 5.6e-79
Identity = 150/177 (84.75%), Postives = 158/177 (89.27%), Query Frame = 0


Query: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDY 60
           MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP+DSPYSGGVFLV IHFPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYSGGVFLVTIHFPPDY 60

Query: 61  PFKPPKVN-DVCLLF--VAFNDLCNMIICFLSCFRVAFRTKVFHPNINSNGSICLDILKE 120
           PFKPPK   D+CLLF  ++F+D   M         VAFRTKVFHPNINSNGSICLDILKE
Sbjct: 61  PFKPPKFQMDICLLFGGLSFDDKEAM---------VAFRTKVFHPNINSNGSICLDILKE 120

Query: 121 QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 175
           QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDR+KYE +ARSWTQK+AMG
Sbjct: 121 QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTARSWTQKFAMG 168

[Close]

BLAST of CmoCh03G002960.1 vs. ExPASy TrEMBL
Match: M1A1T8 (Ubiquitin-conjugating enzyme E2 8 OS=Solanum tuberosum OX=4113 GN=102603677 PE=3 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 7.3e-79
Identity = 150/177 (84.75%), Postives = 157/177 (88.70%), Query Frame = 0


Query: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDY 60
           MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP+DSPYSGGVFLV IHFPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYSGGVFLVTIHFPPDY 60

Query: 61  PFKPPKVN-DVCLLF--VAFNDLCNMIICFLSCFRVAFRTKVFHPNINSNGSICLDILKE 120
           PFKPPK   D+CLLF  + F+D   M         VAFRTKVFHPNINSNGSICLDILKE
Sbjct: 61  PFKPPKFQMDICLLFGRLTFDDKEAM---------VAFRTKVFHPNINSNGSICLDILKE 120

Query: 121 QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 175
           QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDR+KYE +ARSWTQK+AMG
Sbjct: 121 QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTARSWTQKFAMG 168

[Close]

BLAST of CmoCh03G002960.1 vs. ExPASy TrEMBL
Match: A0A7N2R3E1 (UBC core domain-containing protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 6.2e-78
Identity = 147/174 (84.48%), Postives = 155/174 (89.08%), Query Frame = 0


Query: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDY 60
           MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP+DSPY+GGVFLV IHFPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPTDSPYAGGVFLVTIHFPPDY 60

Query: 61  PFKPPKVNDVCLLFVAFNDLCNMIICFLSCFRVAFRTKVFHPNINSNGSICLDILKEQWS 120
           PFKPPK  D   L  AF+   +++       +VAFRTKVFHPNINSNGSICLDILKEQWS
Sbjct: 61  PFKPPKAVDDQALERAFSSYDDILES-----KVAFRTKVFHPNINSNGSICLDILKEQWS 120

Query: 121 PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 175
           PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE +ARSWTQKYAMG
Sbjct: 121 PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 169

[Close]

BLAST of CmoCh03G002960.1 vs. ExPASy TrEMBL
Match: A0A6J1ISN6 (ubiquitin-conjugating enzyme E2 28-like OS=Cucurbita maxima OX=3661 GN=LOC111478335 PE=3 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.4e-77
Identity = 148/174 (85.06%), Postives = 148/174 (85.06%), Query Frame = 0


Query: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDY 60
           MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDY 60

Query: 61  PFKPPKVNDVCLLFVAFNDLCNMIICFLSCFRVAFRTKVFHPNINSNGSICLDILKEQWS 120
           PFKPPK                          VAFRTKVFHPNINSNGSICLDILKEQWS
Sbjct: 61  PFKPPK--------------------------VAFRTKVFHPNINSNGSICLDILKEQWS 120

Query: 121 PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 175
           PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG
Sbjct: 121 PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 148

[Close]

BLAST of CmoCh03G002960.1 vs. ExPASy TrEMBL
Match: A0A6J1EGH9 (ubiquitin-conjugating enzyme E2 28-like OS=Cucurbita moschata OX=3662 GN=LOC111432341 PE=3 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.4e-77
Identity = 148/174 (85.06%), Postives = 148/174 (85.06%), Query Frame = 0


Query: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDY 60
           MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDY 60

Query: 61  PFKPPKVNDVCLLFVAFNDLCNMIICFLSCFRVAFRTKVFHPNINSNGSICLDILKEQWS 120
           PFKPPK                          VAFRTKVFHPNINSNGSICLDILKEQWS
Sbjct: 61  PFKPPK--------------------------VAFRTKVFHPNINSNGSICLDILKEQWS 120

Query: 121 PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 175
           PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG
Sbjct: 121 PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 148

[Close]

BLAST of CmoCh03G002960.1 vs. NCBI nr
Match: KAG4995097.1 (hypothetical protein JHK86_031924 [Glycine max] >KAG5146518.1 hypothetical protein JHK84_032061 [Glycine max])

HSP 1 Score: 302.4 bits (773), Expect = 2.6e-78
Identity = 149/186 (80.11%), Postives = 156/186 (83.87%), Query Frame = 0


Query: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDY 60
           MASKRI+KELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP DSPY+GGVFLV+IHFPPDY
Sbjct: 1   MASKRIVKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYTGGVFLVSIHFPPDY 60

Query: 61  PFKPPKV------------NDVCLLFVAFNDLCNMIICFLSCFRVAFRTKVFHPNINSNG 120
           PFKPPK              D   +   F  L  + + F SC  VAFRTKVFHPNINSNG
Sbjct: 61  PFKPPKAISYPKILWVPDCQDCSSVLKCFIGLLFLAVPFSSCTLVAFRTKVFHPNINSNG 120

Query: 121 SICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWT 175
           SICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEA+ARSWT
Sbjct: 121 SICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARSWT 180

[Close]

BLAST of CmoCh03G002960.1 vs. NCBI nr
Match: XP_012091025.1 (ubiquitin-conjugating enzyme E2-17 kDa isoform X1 [Jatropha curcas])

HSP 1 Score: 300.8 bits (769), Expect = 7.5e-78
Identity = 150/189 (79.37%), Postives = 157/189 (83.07%), Query Frame = 0


Query: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDY 60
           MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP+DSPY+GGVFLV IHFPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPTDSPYAGGVFLVTIHFPPDY 60

Query: 61  PFKPPKVNDVCLLFVAFNDLCNMIICFLS---------------CFRVAFRTKVFHPNIN 120
           PFKPPKV      F  F  +C   I ++                C +VAFRTKVFHPNIN
Sbjct: 61  PFKPPKVTSANERF--FLIMCTSAIAWIRGFCSVLHFSKWAMSFCVQVAFRTKVFHPNIN 120

Query: 121 SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASAR 175
           SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEA+AR
Sbjct: 121 SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATAR 180

[Close]

BLAST of CmoCh03G002960.1 vs. NCBI nr
Match: KAG6595545.1 (Ubiquitin-conjugating enzyme E2 28, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 298.9 bits (764), Expect = 2.8e-77
Identity = 148/174 (85.06%), Postives = 148/174 (85.06%), Query Frame = 0


Query: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDY 60
           MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDY
Sbjct: 154 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDY 213

Query: 61  PFKPPKVNDVCLLFVAFNDLCNMIICFLSCFRVAFRTKVFHPNINSNGSICLDILKEQWS 120
           PFKPPK                          VAFRTKVFHPNINSNGSICLDILKEQWS
Sbjct: 214 PFKPPK--------------------------VAFRTKVFHPNINSNGSICLDILKEQWS 273

Query: 121 PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 175
           PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG
Sbjct: 274 PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 301

[Close]

BLAST of CmoCh03G002960.1 vs. NCBI nr
Match: TYK09753.1 (ubiquitin-conjugating enzyme E2-17 kDa [Cucumis melo var. makuwa])

HSP 1 Score: 298.9 bits (764), Expect = 2.8e-77
Identity = 148/174 (85.06%), Postives = 148/174 (85.06%), Query Frame = 0


Query: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDY 60
           MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDY
Sbjct: 41  MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDY 100

Query: 61  PFKPPKVNDVCLLFVAFNDLCNMIICFLSCFRVAFRTKVFHPNINSNGSICLDILKEQWS 120
           PFKPPK                          VAFRTKVFHPNINSNGSICLDILKEQWS
Sbjct: 101 PFKPPK--------------------------VAFRTKVFHPNINSNGSICLDILKEQWS 160

Query: 121 PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 175
           PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG
Sbjct: 161 PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 188

[Close]

BLAST of CmoCh03G002960.1 vs. NCBI nr
Match: XP_004142676.1 (ubiquitin-conjugating enzyme E2 28 [Cucumis sativus] >XP_008463276.1 PREDICTED: ubiquitin-conjugating enzyme E2 28 [Cucumis melo] >XP_022144084.1 ubiquitin-conjugating enzyme E2 28-like [Momordica charantia] >XP_022924950.1 ubiquitin-conjugating enzyme E2 28-like [Cucurbita moschata] >XP_022950142.1 ubiquitin-conjugating enzyme E2 28-like [Cucurbita moschata] >XP_022966476.1 ubiquitin-conjugating enzyme E2 28-like [Cucurbita maxima] >XP_022978308.1 ubiquitin-conjugating enzyme E2 28-like [Cucurbita maxima] >XP_023517728.1 ubiquitin-conjugating enzyme E2 28-like [Cucurbita pepo subsp. pepo] >XP_023517729.1 ubiquitin-conjugating enzyme E2 28-like [Cucurbita pepo subsp. pepo] >XP_023543247.1 ubiquitin-conjugating enzyme E2 28-like [Cucurbita pepo subsp. pepo] >XP_038882512.1 ubiquitin-conjugating enzyme E2 28-like [Benincasa hispida] >KAG6595637.1 Ubiquitin-conjugating enzyme E2 28, partial [Cucurbita argyrosperma subsp. sororia] >KGN54461.1 hypothetical protein Csa_012070 [Cucumis sativus])

HSP 1 Score: 298.9 bits (764), Expect = 2.8e-77
Identity = 148/174 (85.06%), Postives = 148/174 (85.06%), Query Frame = 0


Query: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDY 60
           MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDY 60

Query: 61  PFKPPKVNDVCLLFVAFNDLCNMIICFLSCFRVAFRTKVFHPNINSNGSICLDILKEQWS 120
           PFKPPK                          VAFRTKVFHPNINSNGSICLDILKEQWS
Sbjct: 61  PFKPPK--------------------------VAFRTKVFHPNINSNGSICLDILKEQWS 120

Query: 121 PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 175
           PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG
Sbjct: 121 PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 148

[Close]

BLAST of CmoCh03G002960.1 vs. TAIR 10
Match: AT1G64230.1 (ubiquitin-conjugating enzyme 28 )

HSP 1 Score: 293.9 bits (751), Expect = 8.5e-80
Identity = 144/174 (82.76%), Postives = 147/174 (84.48%), Query Frame = 0


Query: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDY 60
           MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLV IHFPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDY 60

Query: 61  PFKPPKVNDVCLLFVAFNDLCNMIICFLSCFRVAFRTKVFHPNINSNGSICLDILKEQWS 120
           PFKPPK                          VAFRTKVFHPN+NSNGSICLDILKEQWS
Sbjct: 61  PFKPPK--------------------------VAFRTKVFHPNVNSNGSICLDILKEQWS 120

Query: 121 PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 175
           PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE++ARSWTQKYAMG
Sbjct: 121 PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG 148

[Close]

BLAST of CmoCh03G002960.1 vs. TAIR 10
Match: AT1G64230.2 (ubiquitin-conjugating enzyme 28 )

HSP 1 Score: 293.9 bits (751), Expect = 8.5e-80
Identity = 144/174 (82.76%), Postives = 147/174 (84.48%), Query Frame = 0


Query: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDY 60
           MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLV IHFPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDY 60

Query: 61  PFKPPKVNDVCLLFVAFNDLCNMIICFLSCFRVAFRTKVFHPNINSNGSICLDILKEQWS 120
           PFKPPK                          VAFRTKVFHPN+NSNGSICLDILKEQWS
Sbjct: 61  PFKPPK--------------------------VAFRTKVFHPNVNSNGSICLDILKEQWS 120

Query: 121 PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 175
           PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE++ARSWTQKYAMG
Sbjct: 121 PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG 148

[Close]

BLAST of CmoCh03G002960.1 vs. TAIR 10
Match: AT5G41700.2 (ubiquitin conjugating enzyme 8 )

HSP 1 Score: 291.6 bits (745), Expect = 4.2e-79
Identity = 143/174 (82.18%), Postives = 147/174 (84.48%), Query Frame = 0


Query: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDY 60
           MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP++SPYSGGVFLV IHFPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDY 60

Query: 61  PFKPPKVNDVCLLFVAFNDLCNMIICFLSCFRVAFRTKVFHPNINSNGSICLDILKEQWS 120
           PFKPPK                          VAFRTKVFHPNINSNGSICLDILKEQWS
Sbjct: 61  PFKPPK--------------------------VAFRTKVFHPNINSNGSICLDILKEQWS 120

Query: 121 PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 175
           PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEA+AR+WTQKYAMG
Sbjct: 121 PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARNWTQKYAMG 148

[Close]

BLAST of CmoCh03G002960.1 vs. TAIR 10
Match: AT5G41700.1 (ubiquitin conjugating enzyme 8 )

HSP 1 Score: 291.6 bits (745), Expect = 4.2e-79
Identity = 143/174 (82.18%), Postives = 147/174 (84.48%), Query Frame = 0


Query: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDY 60
           MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP++SPYSGGVFLV IHFPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDY 60

Query: 61  PFKPPKVNDVCLLFVAFNDLCNMIICFLSCFRVAFRTKVFHPNINSNGSICLDILKEQWS 120
           PFKPPK                          VAFRTKVFHPNINSNGSICLDILKEQWS
Sbjct: 61  PFKPPK--------------------------VAFRTKVFHPNINSNGSICLDILKEQWS 120

Query: 121 PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 175
           PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEA+AR+WTQKYAMG
Sbjct: 121 PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARNWTQKYAMG 148

[Close]

BLAST of CmoCh03G002960.1 vs. TAIR 10
Match: AT5G41700.5 (ubiquitin conjugating enzyme 8 )

HSP 1 Score: 291.6 bits (745), Expect = 4.2e-79
Identity = 143/174 (82.18%), Postives = 147/174 (84.48%), Query Frame = 0


Query: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDY 60
           MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP++SPYSGGVFLV IHFPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDY 60

Query: 61  PFKPPKVNDVCLLFVAFNDLCNMIICFLSCFRVAFRTKVFHPNINSNGSICLDILKEQWS 120
           PFKPPK                          VAFRTKVFHPNINSNGSICLDILKEQWS
Sbjct: 61  PFKPPK--------------------------VAFRTKVFHPNINSNGSICLDILKEQWS 120

Query: 121 PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 175
           PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEA+AR+WTQKYAMG
Sbjct: 121 PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARNWTQKYAMG 148

The following BLAST results are available for this feature:

BLAST of CmoCh03G002960.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94F47	1.2e-78	82.76	Ubiquitin-conjugating enzyme E2 28 OS=Arabidopsis thaliana OX=3702 GN=UBC28 PE=1...	[more]
P35135	4.6e-78	82.18	Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum OX=4081 PE=2 SV=1	[more]
P35131	6.0e-78	82.18	Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana OX=3702 GN=UBC8 PE=1 S...	[more]
P35132	2.3e-77	81.61	SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana OX=3702 GN=UBC9 PE=1 SV=1	[more]
Q8S919	3.9e-77	81.03	Ubiquitin-conjugating enzyme E2 5B OS=Oryza sativa subsp. japonica OX=39947 GN=U...	[more]

BLAST of CmoCh03G002960.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A3Q7JWU4	5.6e-79	84.75	UBC core domain-containing protein OS=Solanum lycopersicum OX=4081 PE=3 SV=1	[more]
M1A1T8	7.3e-79	84.75	Ubiquitin-conjugating enzyme E2 8 OS=Solanum tuberosum OX=4113 GN=102603677 PE=3...	[more]
A0A7N2R3E1	6.2e-78	84.48	UBC core domain-containing protein OS=Quercus lobata OX=97700 PE=3 SV=1	[more]
A0A6J1ISN6	1.4e-77	85.06	ubiquitin-conjugating enzyme E2 28-like OS=Cucurbita maxima OX=3661 GN=LOC111478...	[more]
A0A6J1EGH9	1.4e-77	85.06	ubiquitin-conjugating enzyme E2 28-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]

BLAST of CmoCh03G002960.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG4995097.1	2.6e-78	80.11	hypothetical protein JHK86_031924 [Glycine max] >KAG5146518.1 hypothetical prote...	[more]
XP_012091025.1	7.5e-78	79.37	ubiquitin-conjugating enzyme E2-17 kDa isoform X1 [Jatropha curcas]	[more]
KAG6595545.1	2.8e-77	85.06	Ubiquitin-conjugating enzyme E2 28, partial [Cucurbita argyrosperma subsp. soror...	[more]
TYK09753.1	2.8e-77	85.06	ubiquitin-conjugating enzyme E2-17 kDa [Cucumis melo var. makuwa]	[more]
XP_004142676.1	2.8e-77	85.06	ubiquitin-conjugating enzyme E2 28 [Cucumis sativus] >XP_008463276.1 PREDICTED: ...	[more]

BLAST of CmoCh03G002960.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G64230.1	8.5e-80	82.76	ubiquitin-conjugating enzyme 28	[more]
AT1G64230.2	8.5e-80	82.76	ubiquitin-conjugating enzyme 28	[more]
AT5G41700.2	4.2e-79	82.18	ubiquitin conjugating enzyme 8	[more]
AT5G41700.1	4.2e-79	82.18	ubiquitin conjugating enzyme 8	[more]
AT5G41700.5	4.2e-79	82.18	ubiquitin conjugating enzyme 8	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SMART	SM00212	ubc_7	coord: 4..173 e-value: 6.9E-68 score: 241.5
None	No IPR available	PANTHER	PTHR24068	UBIQUITIN-CONJUGATING ENZYME E2	coord: 3..68 coord: 92..171
None	No IPR available	PANTHER	PTHR24068:SF346	BNAA01G32320D PROTEIN	coord: 3..68 coord: 92..171
IPR000608	Ubiquitin-conjugating enzyme E2	PFAM	PF00179	UQ_con	coord: 5..167 e-value: 1.1E-48 score: 164.5
IPR000608	Ubiquitin-conjugating enzyme E2	PROSITE	PS50127	UBC_2	coord: 1..173 score: 54.42519
IPR000608	Ubiquitin-conjugating enzyme E2	CDD	cd00195	UBCc	coord: 3..168 e-value: 2.31011E-69 score: 205.129
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	GENE3D	3.10.110.10	Ubiquitin Conjugating Enzyme	coord: 1..174 e-value: 1.2E-71 score: 241.5
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	SUPERFAMILY	54495	UBC-like	coord: 2..173
IPR023313	Ubiquitin-conjugating enzyme, active site	PROSITE	PS00183	UBC_1	coord: 100..115

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh03G002960	CmoCh03G002960	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh03G002960.1:exon:4916	CmoCh03G002960.1:exon:4916	exon
CmoCh03G002960.1:exon:4917	CmoCh03G002960.1:exon:4917	exon
CmoCh03G002960.1:exon:4918	CmoCh03G002960.1:exon:4918	exon
CmoCh03G002960.1:exon:4919	CmoCh03G002960.1:exon:4919	exon
CmoCh03G002960.1:exon:4920	CmoCh03G002960.1:exon:4920	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh03G002960.1:five_prime_utr	CmoCh03G002960.1:five_prime_utr	five_prime_UTR
CmoCh03G002960.1:five_prime_utr	CmoCh03G002960.1:five_prime_utr_2	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh03G002960.1:cds	CmoCh03G002960.1:cds	CDS
CmoCh03G002960.1:cds	CmoCh03G002960.1:cds_2	CDS
CmoCh03G002960.1:cds	CmoCh03G002960.1:cds_3	CDS
CmoCh03G002960.1:cds	CmoCh03G002960.1:cds_4	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh03G002960.1:three_prime_utr	CmoCh03G002960.1:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh03G002960.1	CmoCh03G002960.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000209	protein polyubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0061631	ubiquitin conjugating enzyme activity