CmoCh02G018330.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G018330.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	VAN3-binding protein-like
Location	Cmo_Chr02: 10388287 .. 10389221 (-)
Sequence length	778
RNA-Seq Expression	CmoCh02G018330.1
Synteny	CmoCh02G018330.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTTTCTTTTTTGGGCGTTAAATTGCCTCTGCTATATCTTTTCCTTTGAGGCACATGCAAAATTTGACTAAGGTGTGGTCCACATGCGTTCACTGTTTCACCATACACACACCGATTAAAGGTCTGTGAATAAAAGGGTTGAGGGGAAGGCAAAGCATAAAACCCAAACCCAAACCCAACACCGCTCTCTCTTCATCAAACTCTCTGTTCCTCATTCAACGCCCAAAAAACACAAACAAAACCCCTCTTCAGCTTCACCATTGCAACCACTACTAGTTTAATGGACGATTCTTACTCCCTGAAACCCTGTAGAACTCACTTACCAGAAAGCCCAAGAGCGCCGATGGAGTTCCTCTCTCGCTCATGGAGTGCCTCAGCCCTCGAAGTCTCCAAGGCTCTGGCACCCCCTCCTCCTTCAATGCCTATGCCCATGCCTATGCATTTACCTTCAAAATCCGCCAGTGGGTCTTCCTGTACTACGTCGTCTATTCCCGAAGACGTCTCCGGCGAGTTGGAGGAGTTCCCTATTCATCATGGGAACGGAAACCACTTCTCTTTTTCTTCTACCGCCACGTCTCAGCTGGTGCTTGATCGCATAATGTCACAATCCGTCAGAGAGGTCACAAAATTTGAATCACAATCCGCCAGTGGGCTTGGGTTTAAGAAGTTTGTTGATTAGAATTTTGGGTTTGTTTTGTTTTTGGCAGGAGGTGTCGCCGTTGACGTCCGGGAGGCTTTCACACAGCAGTGGGCCTTTGAACGGCGGGTCTTTGACGGAAACAGACAGCCCGCCGGTGTCGCCTTCGGAGGAATTCGACGACGTCGTTAAGGTAACAAAGAAATCTCTCTTAAATTTCGAATTTAGGAGACAACTACTCTGTTTCCTCTGTTACTAGCAGCCTTCTGTTTCACAGTCTGTCTGCAGTGTGTTCTAA

mRNA sequence

TGTTTCTTTTTTGGGCGTTAAATTGCCTCTGCTATATCTTTTCCTTTGAGGCACATGCAAAATTTGACTAAGGTGTGGTCCACATGCGTTCACTGTTTCACCATACACACACCGATTAAAGGTCTGTGAATAAAAGGGTTGAGGGGAAGGCAAAGCATAAAACCCAAACCCAAACCCAACACCGCTCTCTCTTCATCAAACTCTCTGTTCCTCATTCAACGCCCAAAAAACACAAACAAAACCCCTCTTCAGCTTCACCATTGCAACCACTACTAGTTTAATGGACGATTCTTACTCCCTGAAACCCTGTAGAACTCACTTACCAGAAAGCCCAAGAGCGCCGATGGAGTTCCTCTCTCGCTCATGGAGTGCCTCAGCCCTCGAAGTCTCCAAGGCTCTGGCACCCCCTCCTCCTTCAATGCCTATGCCCATGCCTATGCATTTACCTTCAAAATCCGCCAGTGGGTCTTCCTGTACTACGTCGTCTATTCCCGAAGACGTCTCCGGCGAGTTGGAGGAGTTCCCTATTCATCATGGGAACGGAAACCACTTCTCTTTTTCTTCTACCGCCACGTCTCAGCTGGTGCTTGATCGCATAATGTCACAATCCGTCAGAGAGGAGGTGTCGCCGTTGACGTCCGGGAGGCTTTCACACAGCAGTGGGCCTTTGAACGGCGGGTCTTTGACGGAAACAGACAGCCCGCCGGTGTCGCCTTCGGAGGAATTCGACGACGTCGTTAAGCCTTCTGTTTCACAGTCTGTCTGCAGTGTGTTCTAA

Coding sequence (CDS)

ATGGACGATTCTTACTCCCTGAAACCCTGTAGAACTCACTTACCAGAAAGCCCAAGAGCGCCGATGGAGTTCCTCTCTCGCTCATGGAGTGCCTCAGCCCTCGAAGTCTCCAAGGCTCTGGCACCCCCTCCTCCTTCAATGCCTATGCCCATGCCTATGCATTTACCTTCAAAATCCGCCAGTGGGTCTTCCTGTACTACGTCGTCTATTCCCGAAGACGTCTCCGGCGAGTTGGAGGAGTTCCCTATTCATCATGGGAACGGAAACCACTTCTCTTTTTCTTCTACCGCCACGTCTCAGCTGGTGCTTGATCGCATAATGTCACAATCCGTCAGAGAGGAGGTGTCGCCGTTGACGTCCGGGAGGCTTTCACACAGCAGTGGGCCTTTGAACGGCGGGTCTTTGACGGAAACAGACAGCCCGCCGGTGTCGCCTTCGGAGGAATTCGACGACGTCGTTAAGCCTTCTGTTTCACAGTCTGTCTGCAGTGTGTTCTAA

Protein sequence

MDDSYSLKPCRTHLPESPRAPMEFLSRSWSASALEVSKALAPPPPSMPMPMPMHLPSKSASGSSCTTSSIPEDVSGELEEFPIHHGNGNHFSFSSTATSQLVLDRIMSQSVREEVSPLTSGRLSHSSGPLNGGSLTETDSPPVSPSEEFDDVVKPSVSQSVCSVF

Homology

[Close]

BLAST of CmoCh02G018330.1 vs. ExPASy Swiss-Prot
Match: Q8W4K5 (VAN3-binding protein OS=Arabidopsis thaliana OX=3702 GN=VAB PE=1 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.6e-32
Identity = 90/151 (59.60%), Postives = 105/151 (69.54%), Query Frame = 0


Query: 12  THLPESPRAPMEFLSRSWSASALEVSKALAPPPPSMPMPMPMHLPSKSASGSSCTTSSI- 71
           T LPESPR PMEFLSRSWS SALEVS+AL                +KSAS ++   SSI 
Sbjct: 27  TQLPESPRGPMEFLSRSWSVSALEVSRALH--------------TAKSASATNRPPSSIN 86

Query: 72  ----PEDVSGELEEFPIHHGN--GNHFSFSSTATSQLVLDRIMSQSVREEVSPLTSGRLS 131
                E ++ E EE P  +     + FSF+++ATSQLVL+RIMSQS   EVSPLTSGRLS
Sbjct: 87  TPIPEETLNPEKEECPPENSTSVSSQFSFAASATSQLVLERIMSQS---EVSPLTSGRLS 146

Query: 132 HSSGPLN-GGSLTETDSPPVSPSEEFDDVVK 155
           HSSGPLN GGS TETDSPP+SPS+EFDDV+K
Sbjct: 147 HSSGPLNGGGSFTETDSPPISPSDEFDDVIK 160

[Close]

BLAST of CmoCh02G018330.1 vs. ExPASy TrEMBL
Match: A0A6J1EYD6 (VAN3-binding protein-like OS=Cucurbita moschata OX=3662 GN=LOC111437343 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 4.1e-79
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MDDSYSLKPCRTHLPESPRAPMEFLSRSWSASALEVSKALAPPPPSMPMPMPMHLPSKSA 60
           MDDSYSLKPCRTHLPESPRAPMEFLSRSWSASALEVSKALAPPPPSMPMPMPMHLPSKSA
Sbjct: 1   MDDSYSLKPCRTHLPESPRAPMEFLSRSWSASALEVSKALAPPPPSMPMPMPMHLPSKSA 60

Query: 61  SGSSCTTSSIPEDVSGELEEFPIHHGNGNHFSFSSTATSQLVLDRIMSQSVREEVSPLTS 120
           SGSSCTTSSIPEDVSGELEEFPIHHGNGNHFSFSSTATSQLVLDRIMSQSVREEVSPLTS
Sbjct: 61  SGSSCTTSSIPEDVSGELEEFPIHHGNGNHFSFSSTATSQLVLDRIMSQSVREEVSPLTS 120

Query: 121 GRLSHSSGPLNGGSLTETDSPPVSPSEEFDDVVK 155
           GRLSHSSGPLNGGSLTETDSPPVSPSEEFDDVVK
Sbjct: 121 GRLSHSSGPLNGGSLTETDSPPVSPSEEFDDVVK 154

[Close]

BLAST of CmoCh02G018330.1 vs. ExPASy TrEMBL
Match: A0A6J1K4G8 (VAN3-binding protein-like OS=Cucurbita maxima OX=3661 GN=LOC111491105 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.8e-74
Identity = 149/154 (96.75%), Postives = 149/154 (96.75%), Query Frame = 0


Query: 1   MDDSYSLKPCRTHLPESPRAPMEFLSRSWSASALEVSKALAPPPPSMPMPMPMHLPSKSA 60
           MDDSYSLKPCRTHLPESPRAPMEFLSRSWSASALEVSKALAPPPPS    MPMHLPSKSA
Sbjct: 1   MDDSYSLKPCRTHLPESPRAPMEFLSRSWSASALEVSKALAPPPPS----MPMHLPSKSA 60

Query: 61  SGSSCTTSSIPEDVSGELEEFPIHHGNGNHFSFSSTATSQLVLDRIMSQSVREEVSPLTS 120
           SGSSCTTSSIPEDVSGE EEFPIHHGNGNHFSFSSTATSQLVLDRIMSQSVREEVSPLTS
Sbjct: 61  SGSSCTTSSIPEDVSGEFEEFPIHHGNGNHFSFSSTATSQLVLDRIMSQSVREEVSPLTS 120

Query: 121 GRLSHSSGPLNGGSLTETDSPPVSPSEEFDDVVK 155
           GRLSHSSGPLNGGSLTETDSPPVSPSEEFDDVVK
Sbjct: 121 GRLSHSSGPLNGGSLTETDSPPVSPSEEFDDVVK 150

[Close]

BLAST of CmoCh02G018330.1 vs. ExPASy TrEMBL
Match: A0A6J1HGD7 (VAN3-binding protein-like OS=Cucurbita moschata OX=3662 GN=LOC111463839 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 5.1e-66
Identity = 134/154 (87.01%), Postives = 140/154 (90.91%), Query Frame = 0


Query: 1   MDDSYSLKPCRTHLPESPRAPMEFLSRSWSASALEVSKALAPPPPSMPMPMPMHLPSKSA 60
           MDDSYSLK CRTHLPESPRAPMEFLSRSWSASA EVSKAL PPP      MP HLP KSA
Sbjct: 1   MDDSYSLKGCRTHLPESPRAPMEFLSRSWSASAFEVSKALVPPPSMNTAAMPFHLPPKSA 60

Query: 61  SGSSCTTSSIPEDVSGELEEFPIHHGNGNHFSFSSTATSQLVLDRIMSQSVREEVSPLTS 120
           SGSSCTTSSIPEDV+GE E+FP+  GNGN+FSFSS+ATSQLVLDRIMSQSVREEVSPLTS
Sbjct: 61  SGSSCTTSSIPEDVTGEFEDFPVLQGNGNNFSFSSSATSQLVLDRIMSQSVREEVSPLTS 120

Query: 121 GRLSHSSGPLNGGSLTETDSPPVSPSEEFDDVVK 155
           GRLSHSSGPLNGGSLTETDSPPVSPS+EFDDVVK
Sbjct: 121 GRLSHSSGPLNGGSLTETDSPPVSPSDEFDDVVK 154

[Close]

BLAST of CmoCh02G018330.1 vs. ExPASy TrEMBL
Match: A0A6J1HUV8 (VAN3-binding protein-like OS=Cucurbita maxima OX=3661 GN=LOC111466914 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 8.8e-66
Identity = 134/154 (87.01%), Postives = 140/154 (90.91%), Query Frame = 0


Query: 1   MDDSYSLKPCRTHLPESPRAPMEFLSRSWSASALEVSKALAPPPPSMPMPMPMHLPSKSA 60
           MDDSYSLK CRTHLPESPRAPMEFLSRSWSASA EVSKAL PPP      MP HLP KSA
Sbjct: 1   MDDSYSLKGCRTHLPESPRAPMEFLSRSWSASAFEVSKALVPPPSMNTAAMPFHLPPKSA 60

Query: 61  SGSSCTTSSIPEDVSGELEEFPIHHGNGNHFSFSSTATSQLVLDRIMSQSVREEVSPLTS 120
           SGSSCTTSSIPEDV+GE EEFP+  G+GN+FSFSS+ATSQLVLDRIMSQSVREEVSPLTS
Sbjct: 61  SGSSCTTSSIPEDVTGEFEEFPVLQGHGNNFSFSSSATSQLVLDRIMSQSVREEVSPLTS 120

Query: 121 GRLSHSSGPLNGGSLTETDSPPVSPSEEFDDVVK 155
           GRLSHSSGPLNGGSLTETDSPPVSPS+EFDDVVK
Sbjct: 121 GRLSHSSGPLNGGSLTETDSPPVSPSDEFDDVVK 154

[Close]

BLAST of CmoCh02G018330.1 vs. ExPASy TrEMBL
Match: A0A5A7UV69 (VAN3-binding protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001120 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.3e-64
Identity = 135/154 (87.66%), Postives = 139/154 (90.26%), Query Frame = 0


Query: 1   MDDSYSLKPCRTHLPESPRAPMEFLSRSWSASALEVSKALAPPPPSMPMPMPMHLPSKSA 60
           MDDSYS KP RTHLPESPRAPMEFLSRSWSASALEVSKALA P PSMP      LP KSA
Sbjct: 1   MDDSYSFKPSRTHLPESPRAPMEFLSRSWSASALEVSKALAAPSPSMP------LPPKSA 60

Query: 61  SGSSCTTSSIPEDVSGELEEFPIHHGNGNHFSFSSTATSQLVLDRIMSQSVREEVSPLTS 120
           S SSCTTSSIPEDV+GE EEFP+ H NGNHFSFSS+ATSQLVLDRIMSQSVREEVSPLTS
Sbjct: 61  SSSSCTTSSIPEDVTGEFEEFPLPHANGNHFSFSSSATSQLVLDRIMSQSVREEVSPLTS 120

Query: 121 GRLSHSSGPLNGGSLTETDSPPVSPSEEFDDVVK 155
           GRLSHSSGPLNGGSLTETDSPPVSPS+EFDDVVK
Sbjct: 121 GRLSHSSGPLNGGSLTETDSPPVSPSDEFDDVVK 148

[Close]

BLAST of CmoCh02G018330.1 vs. TAIR 10
Match: AT3G63300.1 (FORKED 1 )

HSP 1 Score: 140.6 bits (353), Expect = 1.1e-33
Identity = 90/151 (59.60%), Postives = 105/151 (69.54%), Query Frame = 0


Query: 12  THLPESPRAPMEFLSRSWSASALEVSKALAPPPPSMPMPMPMHLPSKSASGSSCTTSSI- 71
           T LPESPR PMEFLSRSWS SALEVS+AL                +KSAS ++   SSI 
Sbjct: 27  TQLPESPRGPMEFLSRSWSVSALEVSRALH--------------TAKSASATNRPPSSIN 86

Query: 72  ----PEDVSGELEEFPIHHGN--GNHFSFSSTATSQLVLDRIMSQSVREEVSPLTSGRLS 131
                E ++ E EE P  +     + FSF+++ATSQLVL+RIMSQS   EVSPLTSGRLS
Sbjct: 87  TPIPEETLNPEKEECPPENSTSVSSQFSFAASATSQLVLERIMSQS---EVSPLTSGRLS 146

Query: 132 HSSGPLN-GGSLTETDSPPVSPSEEFDDVVK 155
           HSSGPLN GGS TETDSPP+SPS+EFDDV+K
Sbjct: 147 HSSGPLNGGGSFTETDSPPISPSDEFDDVIK 160

[Close]

BLAST of CmoCh02G018330.1 vs. TAIR 10
Match: AT4G14740.1 (Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region )

HSP 1 Score: 109.4 bits (272), Expect = 2.8e-24
Identity = 73/136 (53.68%), Postives = 87/136 (63.97%), Query Frame = 0


Query: 15  PESPRAPMEFLSRSWSASALEVSKALAPPPPSMPMPMPMHLPSKSASGSSCTTSSIPEDV 74
           PE+P  PMEFL+RSWS SALEVSKAL PP P +       L SK+         S   D 
Sbjct: 18  PETPLEPMEFLARSWSVSALEVSKALTPPNPQI-------LLSKTEEEEEEEPISSVVDG 77

Query: 75  SGELEEFPIHHGNGNHFSFSSTATSQLVLDRIMSQSVREEVSPLTSGRLSHSSGPLNGGS 134
            G+ E+  +    GN FSF+ + TSQ+V+DRI+S S  +EVSP TSGRLSHSSGPLNG  
Sbjct: 78  DGDTEDTGL--VTGNPFSFACSETSQMVMDRILSHS--QEVSPRTSGRLSHSSGPLNG-- 137

Query: 135 LTETDSPPVSPSEEFD 151
            + TDSPPVSP E  D
Sbjct: 138 -SLTDSPPVSPPESDD 139

[Close]

BLAST of CmoCh02G018330.1 vs. TAIR 10
Match: AT4G14740.2 (Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region )

HSP 1 Score: 109.4 bits (272), Expect = 2.8e-24
Identity = 73/136 (53.68%), Postives = 87/136 (63.97%), Query Frame = 0


Query: 15  PESPRAPMEFLSRSWSASALEVSKALAPPPPSMPMPMPMHLPSKSASGSSCTTSSIPEDV 74
           PE+P  PMEFL+RSWS SALEVSKAL PP P +       L SK+         S   D 
Sbjct: 18  PETPLEPMEFLARSWSVSALEVSKALTPPNPQI-------LLSKTEEEEEEEPISSVVDG 77

Query: 75  SGELEEFPIHHGNGNHFSFSSTATSQLVLDRIMSQSVREEVSPLTSGRLSHSSGPLNGGS 134
            G+ E+  +    GN FSF+ + TSQ+V+DRI+S S  +EVSP TSGRLSHSSGPLNG  
Sbjct: 78  DGDTEDTGL--VTGNPFSFACSETSQMVMDRILSHS--QEVSPRTSGRLSHSSGPLNG-- 137

Query: 135 LTETDSPPVSPSEEFD 151
            + TDSPPVSP E  D
Sbjct: 138 -SLTDSPPVSPPESDD 139

[Close]

BLAST of CmoCh02G018330.1 vs. TAIR 10
Match: AT3G22810.1 (Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region )

HSP 1 Score: 105.5 bits (262), Expect = 4.1e-23
Identity = 73/139 (52.52%), Postives = 91/139 (65.47%), Query Frame = 0


Query: 15  PESPRAPMEFLSRSWSASALEVSKALAPPPPSMPMPMPMHLPSKSASGSSCTTSSIPEDV 74
           PE+P  PMEFLSRSWS SA EVSKAL P            L SK++  +  TT  + E +
Sbjct: 18  PETPLEPMEFLSRSWSVSAHEVSKALTP---------SQQLLSKASIEN--TTVILEEPI 77

Query: 75  -SGELEEFPIHHGNGNHFSFSSTATSQLVLDRIMSQSVREEVSPLTSGRLSHSSGPLNGG 134
            +GE E       +GN FSF+ + TSQ+V+DRI+SQS  +EVSP TSGRLSHSSGPLNG 
Sbjct: 78  AAGETETEDNSFVSGNPFSFACSETSQMVMDRILSQS--QEVSPRTSGRLSHSSGPLNG- 137

Query: 135 SLTETDSPPVSPSEEFDDV 153
             + TDSPP+SP  + DD+
Sbjct: 138 --SLTDSPPISP-HQVDDI 139

[Close]

BLAST of CmoCh02G018330.1 vs. TAIR 10
Match: AT5G43870.1 (Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region )

HSP 1 Score: 84.0 bits (206), Expect = 1.3e-16
Identity = 66/134 (49.25%), Postives = 82/134 (61.19%), Query Frame = 0


Query: 15  PESPRAPMEFLSRSWSASALEVSKA-LAPPPPSMPMPMPMHLPSKSASGSSCTTSSIPED 74
           PE+P   MEFLSR+WSASA EVS+A +A PP S P  M     S+  +GSS  T  +PED
Sbjct: 22  PETPLDSMEFLSRTWSASATEVSRAVVASPPTSQPPQMRF---SEIQNGSSDVT-LVPED 81

Query: 75  VSGELEEFPIHHGNGNHFSFSSTATSQLVLDRIMSQSVREEVSPLTSGRLSHSSGPLNGG 134
               +         GN FSF+S+ TS +V++RIM+QS  E  SP TSGRLSHSS      
Sbjct: 82  EENGIV-------LGNTFSFASSETSLMVMERIMAQS-PEISSPRTSGRLSHSS------ 134

Query: 135 SLTETDSPPVSPSE 148
               TDSPP+SPS+
Sbjct: 142 ---FTDSPPISPSD 134

The following BLAST results are available for this feature:

BLAST of CmoCh02G018330.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8W4K5	1.6e-32	59.60	VAN3-binding protein OS=Arabidopsis thaliana OX=3702 GN=VAB PE=1 SV=1	[more]

BLAST of CmoCh02G018330.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EYD6	4.1e-79	100.00	VAN3-binding protein-like OS=Cucurbita moschata OX=3662 GN=LOC111437343 PE=4 SV=...	[more]
A0A6J1K4G8	1.8e-74	96.75	VAN3-binding protein-like OS=Cucurbita maxima OX=3661 GN=LOC111491105 PE=4 SV=1	[more]
A0A6J1HGD7	5.1e-66	87.01	VAN3-binding protein-like OS=Cucurbita moschata OX=3662 GN=LOC111463839 PE=4 SV=...	[more]
A0A6J1HUV8	8.8e-66	87.01	VAN3-binding protein-like OS=Cucurbita maxima OX=3661 GN=LOC111466914 PE=4 SV=1	[more]
A0A5A7UV69	1.3e-64	87.66	VAN3-binding protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of CmoCh02G018330.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G63300.1	1.1e-33	59.60	FORKED 1	[more]
AT4G14740.1	2.8e-24	53.68	Plant protein of unknown function (DUF828) with plant pleckstrin homology-like r...	[more]
AT4G14740.2	2.8e-24	53.68	Plant protein of unknown function (DUF828) with plant pleckstrin homology-like r...	[more]
AT3G22810.1	4.1e-23	52.52	Plant protein of unknown function (DUF828) with plant pleckstrin homology-like r...	[more]
AT5G43870.1	1.3e-16	49.25	Plant protein of unknown function (DUF828) with plant pleckstrin homology-like r...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008546	Domain of unknown function DUF828	PFAM	PF05703	Auxin_canalis	coord: 15..155 e-value: 4.0E-24 score: 85.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..143
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..165
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR31351:SF31	AUXIN CANALIZATION PROTEIN	coord: 9..154
IPR040269	VAN3-binding protein	PANTHER	PTHR31351	EXPRESSED PROTEIN	coord: 9..154

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh02G018330	CmoCh02G018330	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh02G018330.1:exon:9900	CmoCh02G018330.1:exon:9900	exon
CmoCh02G018330.1:exon:9899	CmoCh02G018330.1:exon:9899	exon
CmoCh02G018330.1:exon:9898	CmoCh02G018330.1:exon:9898	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh02G018330.1:cds	CmoCh02G018330.1:cds_3	CDS
CmoCh02G018330.1:cds	CmoCh02G018330.1:cds_2	CDS
CmoCh02G018330.1:cds	CmoCh02G018330.1:cds	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh02G018330.1:five_prime_utr	CmoCh02G018330.1:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh02G018330.1	CmoCh02G018330.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0010305	leaf vascular tissue pattern formation
biological_process	GO:0010087	phloem or xylem histogenesis
biological_process	GO:0006892	post-Golgi vesicle-mediated transport
cellular_component	GO:0005802	trans-Golgi network