CmoCh02G017910.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G017910.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	actin-depolymerizing factor-like
Location	Cmo_Chr02: 10192620 .. 10194874 (+)
Sequence length	1089
RNA-Seq Expression	CmoCh02G017910.1
Synteny	CmoCh02G017910.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCTTCCCTTTCCTTTCTTTTGCGTCTATATCTTCTGCCTTTCCCTCCGCTTCTTCTTGCCTACCAATTCTGACCTTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTTGATCAAGGTTTCTCATCCTCCTTCTCACATCGACCTCTTCTCCGATCGTCATGTCGTTCAGAGGCCTCCGACGGGTATCTTTATGTTCTTATTTTTATGCTTTCTTTACTTCAACTCAACTGGGTGTACCCTTATTTCAATTGGGGGCTCTGGGTTTTCTCCCGATTTTATGTTTCTTGCGTTTTTCTCAACATTCTTCACCTCTGCTTCATCCTTCCCAACCACCCATCAACTGACTTCTCAATTTTATGTTTTCTTCTTTCTTTACCCTTTTCTCTGATGCTATTTACTCTCCTTTCTTCTTCTTTTTCTCTTTATTTCAAACGAGTACAGTGGATTTTGATGAAAAGAGTTGGATTAGATGGATCATGTGCTTGATTGATTCAGGTTCTTGTTATACCTCTGAAATCTTTGATTTAAAGGGTGGAAGTCATGGTCTTGACTGTCCAGGCAGGTCTGTTGATGGACTTCTGTCTTCTTTGCTTCTTCTGCAATTTCTTTTTAGAAACTTTTCAAAACAAGAATCTATTGGGGATCTCAGGATCAATCATGGTGATCTGGTCTACAGCTAATCAAACCTTTTGTTGATTGAACAATACTATAGATCCCATGGTTCAATTTAAAGGACTTCTGCTGGTGTATTTTGCTGAGGATTTTTACTTTGTTGGCACCATTTTCTTTGAACTATTCACATGCTTTAAATCTTGCTGCTACTTGTTTGGTTGTTTTGACATTTATGAACTGAACTACCTTTACAGCAAAACACTTTATCTGCAATGGGTGTGAATGAACACACCAAGAAGACATTTTCTGAACTACAGAGAAAGAAAATGTATAGATATGTGATCTTTAAGGTTGATGAAAAGAAAAGGGAGGTGGTGGTTGACAAGATTGGCAATCCTGCTGAGAGCTATGAAGATTTCACTGCTGCTCTGCCCGACAACGATTGCCGCTATGCTGTTTATGATTTTGATTTTGTGACATCTGACAACTGTCAGAAGAGCAAGATTTTCTTCATTGCCTGGTTAGCTAAGCTTCACCCATCATCAACTTTAATCTTACATTTCTTATTGCTATATTGTTCATTGGTTTGCCCACAACACAACATTTTGGAACCTACTTAGGAAAGCATTCGTTATCCTTAGGGTTCTTCATGTTCATGGTCAATTGGTTATTCATATAACTCATCTGGTATGCTTGCTATTTTCATTCAATACCTTCTTCTGGTGCATATGCATTACTCTTCACACTGCACAAGTCATGATCTTCAGGGTTCTATATGCATCCACTAATCTCTCTAAAGATCATAGTACAGTACATCGAAATTTTTGGGCAAAACTCGAAAATCTTGACATACTTATTCAGAATGCTCGCCGTTTCTGTTGTTGATGATCCGATGCACCTTTTGAATCTCTTATTCCAGAAACCATCTAGTTACGACCTTCAATGAAAGGAATTCTTTTGGTCATGTCATATCAATGATAATCACATTGGTGTGCACTTCAGGTCTCCAGCGAGCTCTCGAATCCGTGCCAAGATGCTCTATGCAACATCTAAAGACAACTTTCGACATGAGCTGGATGGCATTCACTATGAGATCCAAGCTACTGACCCTGCAGAGATGGACCTGGAAGTGATTAGAGACCGTGCTCAATGAACAGTCTCCGTTTAATTTGTTTAATTTGTTCTCTCTAAGGGGTAAACCAGCTAGTATTTTGAATACTTATGAACTGGTTTAGCTTCGATATGTGTAAAACCGAACGCTGGCGAATGAAAACGTTGGACAAAGCGTAAAATAAACTAACATCTGCAGAATGCTGATATATGGTGGATCGACATGTTGTTGTGGTTGCTATCACTGCTTCTCAGGTGAAGACAAGTTTGCTATAGAAAATGTTTAGAATTTATCAAACCTATTATCATTGGAAATTTGTTCTCTGGTGGATCTAATTCACTCTCTCTTCTGTGCCTCCTTTTATGATGTGAAATGAAGAACACAATGCCGCATGGATCATTGCATGCTTTGTGTATTGTCTTTCATGAACTGAGTTTCAGCTCATCATCCATGGCATCGACCAAAAACAATTTTCCAAACAAACATATGAAAAAGAAGCATTTGATTCCTGTC

mRNA sequence

CCCTTCCCTTTCCTTTCTTTTGCGTCTATATCTTCTGCCTTTCCCTCCGCTTCTTCTTGCCTACCAATTCTGACCTTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTTGATCAAGGTTTCTCATCCTCCTTCTCACATCGACCTCTTCTCCGATCGTCATGTCGTTCAGAGGCCTCCGACGGCAAAACACTTTATCTGCAATGGGTGTGAATGAACACACCAAGAAGACATTTTCTGAACTACAGAGAAAGAAAATGTATAGATATGTGATCTTTAAGGTTGATGAAAAGAAAAGGGAGGTGGTGGTTGACAAGATTGGCAATCCTGCTGAGAGCTATGAAGATTTCACTGCTGCTCTGCCCGACAACGATTGCCGCTATGCTGTTTATGATTTTGATTTTGTGACATCTGACAACTGTCAGAAGAGCAAGATTTTCTTCATTGCCTGGTCTCCAGCGAGCTCTCGAATCCGTGCCAAGATGCTCTATGCAACATCTAAAGACAACTTTCGACATGAGCTGGATGGCATTCACTATGAGATCCAAGCTACTGACCCTGCAGAGATGGACCTGGAAGTGATTAGAGACCGTGCTCAATGAACAGTCTCCGTTTAATTTGTTTAATTTGTTCTCTCTAAGGGGTAAACCAGCTAGTATTTTGAATACTTATGAACTGGTTTAGCTTCGATATGTGTAAAACCGAACGCTGGCGAATGAAAACGTTGGACAAAGCGTAAAATAAACTAACATCTGCAGAATGCTGATATATGGTGGATCGACATGTTGTTGTGGTTGCTATCACTGCTTCTCAGGTGAAGACAAGTTTGCTATAGAAAATGTTTAGAATTTATCAAACCTATTATCATTGGAAATTTGTTCTCTGGTGGATCTAATTCACTCTCTCTTCTGTGCCTCCTTTTATGATGTGAAATGAAGAACACAATGCCGCATGGATCATTGCATGCTTTGTGTATTGTCTTTCATGAACTGAGTTTCAGCTCATCATCCATGGCATCGACCAAAAACAATTTTCCAAACAAACATATGAAAAAGAAGCATTTGATTCCTGTC

Coding sequence (CDS)

ATGTCGTTCAGAGGCCTCCGACGGCAAAACACTTTATCTGCAATGGGTGTGAATGAACACACCAAGAAGACATTTTCTGAACTACAGAGAAAGAAAATGTATAGATATGTGATCTTTAAGGTTGATGAAAAGAAAAGGGAGGTGGTGGTTGACAAGATTGGCAATCCTGCTGAGAGCTATGAAGATTTCACTGCTGCTCTGCCCGACAACGATTGCCGCTATGCTGTTTATGATTTTGATTTTGTGACATCTGACAACTGTCAGAAGAGCAAGATTTTCTTCATTGCCTGGTCTCCAGCGAGCTCTCGAATCCGTGCCAAGATGCTCTATGCAACATCTAAAGACAACTTTCGACATGAGCTGGATGGCATTCACTATGAGATCCAAGCTACTGACCCTGCAGAGATGGACCTGGAAGTGATTAGAGACCGTGCTCAATGA

Protein sequence

MSFRGLRRQNTLSAMGVNEHTKKTFSELQRKKMYRYVIFKVDEKKREVVVDKIGNPAESYEDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHELDGIHYEIQATDPAEMDLEVIRDRAQ

Homology

[Close]

BLAST of CmoCh02G017910.1 vs. ExPASy Swiss-Prot
Match: Q8SAG3 (Actin-depolymerizing factor OS=Vitis vinifera OX=29760 PE=2 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 8.0e-60
Identity = 112/145 (77.24%), Postives = 129/145 (88.97%), Query Frame = 0


Query: 1   MSFRGLRRQNTLSAMGVNEHTKKTFSELQRKKMYRYVIFKVDEKKREVVVDKIGNPAESY 60
           MSFRGL   N  S MGV +H+K TF EL+RKK++RYVIFK+DEKK+EVVV+K G PAES+
Sbjct: 1   MSFRGL---NASSGMGVADHSKNTFLELKRKKVHRYVIFKIDEKKKEVVVEKTGGPAESF 60

Query: 61  EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHE 120
           ++F AALP+NDCRYAVYDFDFVTS+NCQKSKIFFIAWSP SSRIRAKMLYATSK+ FR E
Sbjct: 61  DEFAAALPENDCRYAVYDFDFVTSENCQKSKIFFIAWSPDSSRIRAKMLYATSKERFRRE 120

Query: 121 LDGIHYEIQATDPAEMDLEVIRDRA 146
           LDG+HYEIQATDP EMDLEV+R+RA
Sbjct: 121 LDGVHYEIQATDPTEMDLEVLRERA 142

[Close]

BLAST of CmoCh02G017910.1 vs. ExPASy Swiss-Prot
Match: Q9ZSK2 (Actin-depolymerizing factor 6 OS=Arabidopsis thaliana OX=3702 GN=ADF6 PE=1 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.3e-57
Identity = 106/145 (73.10%), Postives = 124/145 (85.52%), Query Frame = 0


Query: 1   MSFRGLRRQNTLSAMGVNEHTKKTFSELQRKKMYRYVIFKVDEKKREVVVDKIGNPAESY 60
           MSFRGL R N +S MGV + +K TF ELQRKK +RYV+FK+DE K+EVVV+K GNP ESY
Sbjct: 1   MSFRGLSRPNAISGMGVADESKTTFLELQRKKTHRYVVFKIDESKKEVVVEKTGNPTESY 60

Query: 61  EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHE 120
           +DF A+LPDNDCRYAVYDFDFVTS+NCQKSKIFF AWSP++S IRAK+LY+TSKD    E
Sbjct: 61  DDFLASLPDNDCRYAVYDFDFVTSENCQKSKIFFFAWSPSTSGIRAKVLYSTSKDQLSRE 120

Query: 121 LDGIHYEIQATDPAEMDLEVIRDRA 146
           L GIHYEIQATDP E+DLEV+R+RA
Sbjct: 121 LQGIHYEIQATDPTEVDLEVLRERA 145

[Close]

BLAST of CmoCh02G017910.1 vs. ExPASy Swiss-Prot
Match: Q2QLT8 (Actin-depolymerizing factor 11 OS=Oryza sativa subsp. japonica OX=39947 GN=ADF11 PE=2 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 5.2e-51
Identity = 93/138 (67.39%), Postives = 118/138 (85.51%), Query Frame = 0


Query: 8   RQNTLSAMGVNEHTKKTFSELQRKKMYRYVIFKVDEKKREVVVDKIGNPAESYEDFTAAL 67
           R N  S +GV    K+TF ELQRKK +RYVIFK+D+K +EVVV+K G+  ES++DF  +L
Sbjct: 7   RANASSGIGVAAECKQTFLELQRKKSHRYVIFKIDDKCKEVVVEKTGSSTESFDDFMDSL 66

Query: 68  PDNDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHELDGIHYE 127
           P++DCRYA+YDFDFVT +NCQKSKIFF+AWSP+ SRIRAKMLYATSK+ FR ELDG+HYE
Sbjct: 67  PESDCRYAIYDFDFVTEENCQKSKIFFVAWSPSVSRIRAKMLYATSKERFRRELDGVHYE 126

Query: 128 IQATDPAEMDLEVIRDRA 146
           IQATDP+E+D+E++R+RA
Sbjct: 127 IQATDPSELDIELLRERA 144

[Close]

BLAST of CmoCh02G017910.1 vs. ExPASy Swiss-Prot
Match: Q9AY76 (Actin-depolymerizing factor 2 OS=Oryza sativa subsp. japonica OX=39947 GN=ADF2 PE=2 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.2e-49
Identity = 93/136 (68.38%), Postives = 113/136 (83.09%), Query Frame = 0


Query: 10  NTLSAMGVNEHTKKTFSELQRKKMYRYVIFKVDEKKREVVVDKIGNPAESYEDFTAALPD 69
           N  S MGV    + TF ELQ KK +RYVIFK++EK+++VVV+K G   ESY+DF A+LP+
Sbjct: 9   NASSGMGVAPDIRDTFLELQMKKAFRYVIFKIEEKQKQVVVEKTGATTESYDDFLASLPE 68

Query: 70  NDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHELDGIHYEIQ 129
           NDCRYA+YDFDFVT +N QKSKIFFIAWSP++SRIRAKMLY+TSKD  + ELDG HYEIQ
Sbjct: 69  NDCRYALYDFDFVTGENVQKSKIFFIAWSPSTSRIRAKMLYSTSKDRIKQELDGFHYEIQ 128

Query: 130 ATDPAEMDLEVIRDRA 146
           ATDP E+DLEV+R+RA
Sbjct: 129 ATDPTEVDLEVLRERA 144

[Close]

BLAST of CmoCh02G017910.1 vs. ExPASy Swiss-Prot
Match: Q337A5 (Actin-depolymerizing factor 10 OS=Oryza sativa subsp. japonica OX=39947 GN=ADF10 PE=2 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 3.5e-47
Identity = 86/129 (66.67%), Postives = 111/129 (86.05%), Query Frame = 0


Query: 17  VNEHTKKTFSELQRKKMYRYVIFKVDEKKREVVVDKIGNPAESYEDFTAALPDNDCRYAV 76
           V E +K  F EL+R+K++RYVIFK+D+++ E+VV+K G P ESY+DFTA+LP +DCRYAV
Sbjct: 20  VPEKSKSAFWELKRRKVHRYVIFKIDDRREEIVVEKTGAPGESYDDFTASLPADDCRYAV 79

Query: 77  YDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHELDGIHYEIQATDPAEM 136
           YD DFV+ DNC+KSKIFFI+WSP+ SRIRAK +YA S++ FRHELDG+H+EIQATDP +M
Sbjct: 80  YDLDFVSDDNCRKSKIFFISWSPSVSRIRAKTIYAVSRNQFRHELDGVHFEIQATDPDDM 139

Query: 137 DLEVIRDRA 146
           DLEV+R RA
Sbjct: 140 DLEVLRGRA 148

[Close]

BLAST of CmoCh02G017910.1 vs. ExPASy TrEMBL
Match: A0A1S3BHG1 (actin-depolymerizing factor OS=Cucumis melo OX=3656 GN=LOC103489879 PE=3 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 2.8e-76
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MSFRGLRRQNTLSAMGVNEHTKKTFSELQRKKMYRYVIFKVDEKKREVVVDKIGNPAESY 60
           MSFRGLRRQNTLSAMGVNEHTKKTFSELQRKKMYRYVIFKVDEKKREVVVDKIGNPAESY
Sbjct: 1   MSFRGLRRQNTLSAMGVNEHTKKTFSELQRKKMYRYVIFKVDEKKREVVVDKIGNPAESY 60

Query: 61  EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHE 120
           EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHE
Sbjct: 61  EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHE 120

Query: 121 LDGIHYEIQATDPAEMDLEVIRDRAQ 147
           LDGIHYEIQATDPAEMDLEVIRDRAQ
Sbjct: 121 LDGIHYEIQATDPAEMDLEVIRDRAQ 146

[Close]

BLAST of CmoCh02G017910.1 vs. ExPASy TrEMBL
Match: A0A6J1K588 (actin-depolymerizing factor-like OS=Cucurbita maxima OX=3661 GN=LOC111491296 PE=3 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 2.8e-76
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MSFRGLRRQNTLSAMGVNEHTKKTFSELQRKKMYRYVIFKVDEKKREVVVDKIGNPAESY 60
           MSFRGLRRQNTLSAMGVNEHTKKTFSELQRKKMYRYVIFKVDEKKREVVVDKIGNPAESY
Sbjct: 1   MSFRGLRRQNTLSAMGVNEHTKKTFSELQRKKMYRYVIFKVDEKKREVVVDKIGNPAESY 60

Query: 61  EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHE 120
           EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHE
Sbjct: 61  EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHE 120

Query: 121 LDGIHYEIQATDPAEMDLEVIRDRAQ 147
           LDGIHYEIQATDPAEMDLEVIRDRAQ
Sbjct: 121 LDGIHYEIQATDPAEMDLEVIRDRAQ 146

[Close]

BLAST of CmoCh02G017910.1 vs. ExPASy TrEMBL
Match: A0A6J1EY99 (actin-depolymerizing factor-like OS=Cucurbita moschata OX=3662 GN=LOC111437311 PE=3 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 2.8e-76
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MSFRGLRRQNTLSAMGVNEHTKKTFSELQRKKMYRYVIFKVDEKKREVVVDKIGNPAESY 60
           MSFRGLRRQNTLSAMGVNEHTKKTFSELQRKKMYRYVIFKVDEKKREVVVDKIGNPAESY
Sbjct: 1   MSFRGLRRQNTLSAMGVNEHTKKTFSELQRKKMYRYVIFKVDEKKREVVVDKIGNPAESY 60

Query: 61  EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHE 120
           EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHE
Sbjct: 61  EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHE 120

Query: 121 LDGIHYEIQATDPAEMDLEVIRDRAQ 147
           LDGIHYEIQATDPAEMDLEVIRDRAQ
Sbjct: 121 LDGIHYEIQATDPAEMDLEVIRDRAQ 146

[Close]

BLAST of CmoCh02G017910.1 vs. ExPASy TrEMBL
Match: A0A0A0L7Z2 (ADF-H domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G389830 PE=3 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 6.3e-76
Identity = 145/146 (99.32%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MSFRGLRRQNTLSAMGVNEHTKKTFSELQRKKMYRYVIFKVDEKKREVVVDKIGNPAESY 60
           MSFRGLRRQNTLSAMGVNEHTKKTFSELQRKKMYRYVIF+VDEKKREVVVDKIGNPAESY
Sbjct: 1   MSFRGLRRQNTLSAMGVNEHTKKTFSELQRKKMYRYVIFRVDEKKREVVVDKIGNPAESY 60

Query: 61  EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHE 120
           EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHE
Sbjct: 61  EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHE 120

Query: 121 LDGIHYEIQATDPAEMDLEVIRDRAQ 147
           LDGIHYEIQATDPAEMDLEVIRDRAQ
Sbjct: 121 LDGIHYEIQATDPAEMDLEVIRDRAQ 146

[Close]

BLAST of CmoCh02G017910.1 vs. ExPASy TrEMBL
Match: A0A6J1CY17 (actin-depolymerizing factor OS=Momordica charantia OX=3673 GN=LOC111015308 PE=3 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.2e-74
Identity = 143/146 (97.95%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MSFRGLRRQNTLSAMGVNEHTKKTFSELQRKKMYRYVIFKVDEKKREVVVDKIGNPAESY 60
           MSFRGLRRQNTLSAMGVNEHTKKTFSELQRKKMYRYVIFKVDEKKREVVV+K G+PAESY
Sbjct: 1   MSFRGLRRQNTLSAMGVNEHTKKTFSELQRKKMYRYVIFKVDEKKREVVVEKTGSPAESY 60

Query: 61  EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHE 120
           EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHE
Sbjct: 61  EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHE 120

Query: 121 LDGIHYEIQATDPAEMDLEVIRDRAQ 147
           LDGIHYEIQATDPAEMDLEVIRDRAQ
Sbjct: 121 LDGIHYEIQATDPAEMDLEVIRDRAQ 146

[Close]

BLAST of CmoCh02G017910.1 vs. TAIR 10
Match: AT2G31200.1 (actin depolymerizing factor 6 )

HSP 1 Score: 223.8 bits (569), Expect = 9.1e-59
Identity = 106/145 (73.10%), Postives = 124/145 (85.52%), Query Frame = 0


Query: 1   MSFRGLRRQNTLSAMGVNEHTKKTFSELQRKKMYRYVIFKVDEKKREVVVDKIGNPAESY 60
           MSFRGL R N +S MGV + +K TF ELQRKK +RYV+FK+DE K+EVVV+K GNP ESY
Sbjct: 1   MSFRGLSRPNAISGMGVADESKTTFLELQRKKTHRYVVFKIDESKKEVVVEKTGNPTESY 60

Query: 61  EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHE 120
           +DF A+LPDNDCRYAVYDFDFVTS+NCQKSKIFF AWSP++S IRAK+LY+TSKD    E
Sbjct: 61  DDFLASLPDNDCRYAVYDFDFVTSENCQKSKIFFFAWSPSTSGIRAKVLYSTSKDQLSRE 120

Query: 121 LDGIHYEIQATDPAEMDLEVIRDRA 146
           L GIHYEIQATDP E+DLEV+R+RA
Sbjct: 121 LQGIHYEIQATDPTEVDLEVLRERA 145

[Close]

BLAST of CmoCh02G017910.1 vs. TAIR 10
Match: AT4G00680.1 (actin depolymerizing factor 8 )

HSP 1 Score: 186.4 bits (472), Expect = 1.6e-47
Identity = 81/135 (60.00%), Postives = 113/135 (83.70%), Query Frame = 0


Query: 10  NTLSAMGVNEHTKKTFSELQRKKMYRYVIFKVDEKKREVVVDKIGNPAESYEDFTAALPD 69
           N+ S M VN+  K  F EL+ K+ YR+++FK+DEK ++V ++K+GNP E+Y+DFT+++PD
Sbjct: 3   NSASGMHVNDECKIKFLELKAKRTYRFIVFKIDEKAQQVQIEKLGNPEETYDDFTSSIPD 62

Query: 70  NDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHELDGIHYEIQ 129
           ++CRYAVYDFDF T DNCQKSKIFFIAWSP +SR+R+KMLYA+SKD F+ E++GI  E+Q
Sbjct: 63  DECRYAVYDFDFTTEDNCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKREMEGIQVELQ 122

Query: 130 ATDPAEMDLEVIRDR 145
           ATDP+EM L++I+ R
Sbjct: 123 ATDPSEMSLDIIKGR 137

[Close]

BLAST of CmoCh02G017910.1 vs. TAIR 10
Match: AT1G01750.1 (actin depolymerizing factor 11 )

HSP 1 Score: 185.3 bits (469), Expect = 3.6e-47
Identity = 81/135 (60.00%), Postives = 113/135 (83.70%), Query Frame = 0


Query: 10  NTLSAMGVNEHTKKTFSELQRKKMYRYVIFKVDEKKREVVVDKIGNPAESYEDFTAALPD 69
           N+ S M V++  K  F EL+ K+ YR+++FK+DEK ++V++DK+GNP E+YEDFT ++P+
Sbjct: 3   NSASGMHVSDECKLKFLELKAKRNYRFIVFKIDEKAQQVMIDKLGNPEETYEDFTRSIPE 62

Query: 70  NDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHELDGIHYEIQ 129
           ++CRYAVYD+DF T +NCQKSKIFFIAWSP +SR+R+KMLYA+SKD F+ ELDGI  E+Q
Sbjct: 63  DECRYAVYDYDFTTPENCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKRELDGIQVELQ 122

Query: 130 ATDPAEMDLEVIRDR 145
           ATDP+EM L++I+ R
Sbjct: 123 ATDPSEMSLDIIKGR 137

[Close]

BLAST of CmoCh02G017910.1 vs. TAIR 10
Match: AT4G25590.1 (actin depolymerizing factor 7 )

HSP 1 Score: 178.3 bits (451), Expect = 4.4e-45
Identity = 82/136 (60.29%), Postives = 109/136 (80.15%), Query Frame = 0


Query: 10  NTLSAMGVNEHTKKTFSELQRKKMYRYVIFKVDEKKREVVVDKIGNPAESYEDFTAALPD 69
           N  S M V +  K  F EL+ K+ YR++IF++D   ++VVV+K+GNP E+Y+DFTA+LP 
Sbjct: 3   NAASGMAVEDECKLKFLELKSKRNYRFIIFRID--GQQVVVEKLGNPDETYDDFTASLPA 62

Query: 70  NDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHELDGIHYEIQ 129
           N+CRYAV+DFDF+T +NCQKSKIFFIAWSP SSR+R KM+YA+SKD F+ ELDGI  E+Q
Sbjct: 63  NECRYAVFDFDFITDENCQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQ 122

Query: 130 ATDPAEMDLEVIRDRA 146
           ATDP+EM  ++I+ RA
Sbjct: 123 ATDPSEMSFDIIKSRA 136

[Close]

BLAST of CmoCh02G017910.1 vs. TAIR 10
Match: AT3G46010.2 (actin depolymerizing factor 1 )

HSP 1 Score: 177.9 bits (450), Expect = 5.7e-45
Identity = 78/139 (56.12%), Postives = 111/139 (79.86%), Query Frame = 0


Query: 7   RRQNTLSAMGVNEHTKKTFSELQRKKMYRYVIFKVDEKKREVVVDKIGNPAESYEDFTAA 66
           R  N  S M V++  K  F EL+ K+ +R++++K++EK+++VVV+K+G P ++YE+F A 
Sbjct: 11  RSANAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAAC 70

Query: 67  LPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHELDGIHY 126
           LP ++CRYA+YDFDFVT++NCQKSKIFFIAW P  +++R+KM+YA+SKD F+ ELDGI  
Sbjct: 71  LPADECRYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQV 130

Query: 127 EIQATDPAEMDLEVIRDRA 146
           E+QATDP EMDL+V R RA
Sbjct: 131 ELQATDPTEMDLDVFRSRA 149

The following BLAST results are available for this feature:

BLAST of CmoCh02G017910.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8SAG3	8.0e-60	77.24	Actin-depolymerizing factor OS=Vitis vinifera OX=29760 PE=2 SV=1	[more]
Q9ZSK2	1.3e-57	73.10	Actin-depolymerizing factor 6 OS=Arabidopsis thaliana OX=3702 GN=ADF6 PE=1 SV=1	[more]
Q2QLT8	5.2e-51	67.39	Actin-depolymerizing factor 11 OS=Oryza sativa subsp. japonica OX=39947 GN=ADF11...	[more]
Q9AY76	2.2e-49	68.38	Actin-depolymerizing factor 2 OS=Oryza sativa subsp. japonica OX=39947 GN=ADF2 P...	[more]
Q337A5	3.5e-47	66.67	Actin-depolymerizing factor 10 OS=Oryza sativa subsp. japonica OX=39947 GN=ADF10...	[more]

BLAST of CmoCh02G017910.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BHG1	2.8e-76	100.00	actin-depolymerizing factor OS=Cucumis melo OX=3656 GN=LOC103489879 PE=3 SV=1	[more]
A0A6J1K588	2.8e-76	100.00	actin-depolymerizing factor-like OS=Cucurbita maxima OX=3661 GN=LOC111491296 PE=...	[more]
A0A6J1EY99	2.8e-76	100.00	actin-depolymerizing factor-like OS=Cucurbita moschata OX=3662 GN=LOC111437311 P...	[more]
A0A0A0L7Z2	6.3e-76	99.32	ADF-H domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G389830 PE=3 ...	[more]
A0A6J1CY17	1.2e-74	97.95	actin-depolymerizing factor OS=Momordica charantia OX=3673 GN=LOC111015308 PE=3 ...	[more]

BLAST of CmoCh02G017910.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G31200.1	9.1e-59	73.10	actin depolymerizing factor 6	[more]
AT4G00680.1	1.6e-47	60.00	actin depolymerizing factor 8	[more]
AT1G01750.1	3.6e-47	60.00	actin depolymerizing factor 11	[more]
AT4G25590.1	4.4e-45	60.29	actin depolymerizing factor 7	[more]
AT3G46010.2	5.7e-45	56.12	actin depolymerizing factor 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002108	Actin-depolymerising factor homology domain	SMART	SM00102	adf_2	coord: 19..146 e-value: 9.2E-53 score: 191.3
IPR002108	Actin-depolymerising factor homology domain	PFAM	PF00241	Cofilin_ADF	coord: 22..143 e-value: 8.9E-38 score: 128.9
IPR002108	Actin-depolymerising factor homology domain	PROSITE	PS51263	ADF_H	coord: 13..146 score: 39.007858
IPR029006	ADF-H/Gelsolin-like domain superfamily	GENE3D	3.40.20.10	Severin	coord: 5..146 e-value: 3.1E-50 score: 172.1
IPR017904	ADF/Cofilin	PANTHER	PTHR11913	COFILIN-RELATED	coord: 1..146
IPR017904	ADF/Cofilin	CDD	cd11286	ADF_cofilin_like	coord: 13..145 e-value: 6.22961E-61 score: 181.986
None	No IPR available	PANTHER	PTHR11913:SF96	COFILIN/ACTIN-DEPOLYMERIZING FACTOR-LIKE PROTEIN	coord: 1..146
None	No IPR available	SUPERFAMILY	55753	Actin depolymerizing proteins	coord: 10..144

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh02G017910	CmoCh02G017910	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh02G017910.1:exon:9204	CmoCh02G017910.1:exon:9204	exon
CmoCh02G017910.1:exon:9205	CmoCh02G017910.1:exon:9205	exon
CmoCh02G017910.1:exon:9206	CmoCh02G017910.1:exon:9206	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh02G017910.1:five_prime_utr	CmoCh02G017910.1:five_prime_utr	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh02G017910.1:cds	CmoCh02G017910.1:cds	CDS
CmoCh02G017910.1:cds	CmoCh02G017910.1:cds_2	CDS
CmoCh02G017910.1:cds	CmoCh02G017910.1:cds_3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh02G017910.1:three_prime_utr	CmoCh02G017910.1:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh02G017910.1	CmoCh02G017910.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030042	actin filament depolymerization
cellular_component	GO:0015629	actin cytoskeleton
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003779	actin binding
molecular_function	GO:0051015	actin filament binding