CmoCh02G016770.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G016770.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	SANT domain-containing protein
Location	Cmo_Chr02: 9623204 .. 9624935 (+)
Sequence length	809
RNA-Seq Expression	CmoCh02G016770.1
Synteny	CmoCh02G016770.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATATTTACACAGGGCAATCAGATTTATACGAGAATGCTTCATCAGGGGACACGAGCAATATTGAAGATATAATATTTGACATTCAAAAGCCAAGCATGGGAAGGCAAAATGAGCACTCAGTTCAACAAAATAGGCAAAACCCTCATCAAGATAAGGATTATCATGCCCTCTGGAGCAATTCTTCCAGGTATAATTCCCTTTCTCACTTCATTTTTCATATTCAAACCCATAGTTTTGGAAGATTTCAACTTGAATTCTTGTGGGTTGATTTATAATACAAAGGGAAAATGATGTAATAGTCTAAGTCCACTTTTCATTCTCCTCCTAAACCCACGTGGGATTTCACAATCCACCCCTTTAGGTCCCAGCGTGCTTCTTTGCACACTACCTTGTGTCCACTCCCTTCAGTGCTCAACCTCCCTGTTGGCACATTGCCTAGTGCCTGATTCTGATACCATTTGTAACAGTTCAAACCCTATGCTTGTGGATATCGTCATCAAAAACTCCATGATGAGGCAATTATAAACATAGTGTCTTGAAATTTGTGTGGTTTGGATTTTGTGGGGCTTCACCATATTCAAAATAATTGGAGATGAAATAAGAAACTTAGTGTGAAAGGTAAGGGGTTTTGATGGAGGCATTAGTGGAAATTTTGATGCCTAAAAACAAAGCTTTTTTTGTTTGAAAAATTCCTCGTAGTTTGTGATTATAGTAATGGGGTGTCACATGGAGTTGGTGTAGCTTTATATCAATCAAAAGCACCAAATGCAAAGCCAAAAAGATTTGTAGCTTTCTTTTTCTTTTTTATATACTCTGCATGGTTTATTATGGTTTCCGCTGATTGAAGATATGCTTTTTCCCTTTCTTTCTTGTGTTTTGGTTATGTCACAGGGAAGCTTGGTTGCATGGTTTTCCTAATGATTCTTCTAGGGACCTTTCATCGTCCCTCGAGGTACTCCTTCTTCTCTCTCCTTCTCGATACCATATATCTTAACACACAAGACTCGAACGTACGTTCTAAACAAATTTAGGGTCATTGTGGACTCCGAGATTGATTTGAGTTGTCAAATCAAGAACATACGAACTAGTTTATTGCTTCATATTTTTAGTCTCGTGTCGGTTTCGAGCTCATTATTGATAGTAATCCACTTTTTTTTTTTTTGTTTTACAGAATGACGTGGATCCAAAGAGCTCAAACAACGAGAGACTATCGGAGATAAGCTCGTCGGGGAACCTTCCTCAGAAGCCTAATTTGGAATTCACATTAGGAAGGGCAGTTTGATGAACATAACATTATATGTGTGAGAACAGAAATTGAAGTGAAGTTGGAGCCTCTGAAGAACAAAAAAAGAAATTGATTTTAAAGAAAAAGAAAGAAAGAAAAAAAAAAAGAGAGGTAAAGAAAGACAAGCAGACAAGAAAAAAAGACAAAAAGCAACAAAAGCAGATCCTAATTCCCATCAACCTTTGAGGTCCCAAATCATCTTATTTTATTTCAGCAAATCAAATATATGAATCTAATTGATTTTTTGTTTGTTTTGCACTTACAAAAAAAAGAAAAAAAAGAAGAGAAGGAGGAAATTAACCTTCGAAATTGTAACCAATGAAGCCATTGTTCGTCTTTTTTTTTTTTTTTTGGTTTCTCGAGTAGAGAAGATTTGAACCTATAACCTGTAAATATATGGTTTTTTTTCTTTATTCAGATAAATTATAAATCTGGTGTCGAAG

mRNA sequence

ATGAATATTTACACAGGGCAATCAGATTTATACGAGAATGCTTCATCAGGGGACACGAGCAATATTGAAGATATAATATTTGACATTCAAAAGCCAAGCATGGGAAGGCAAAATGAGCACTCAGTTCAACAAAATAGGCAAAACCCTCATCAAGATAAGGATTATCATGCCCTCTGGAGCAATTCTTCCAGGGAAGCTTGGTTGCATGGTTTTCCTAATGATTCTTCTAGGGACCTTTCATCGTCCCTCGAGAATGACGTGGATCCAAAGAGCTCAAACAACGAGAGACTATCGGAGATAAGCTCGTCGGGGAACCTTCCTCAGAAGCCTAATTTGGAATTCACATTAGGAAGGGCAGTTTGATGAACATAACATTATATGTGTGAGAACAGAAATTGAAGTGAAGTTGGAGCCTCTGAAGAACAAAAAAAGAAATTGATTTTAAAGAAAAAGAAAGAAAGAAAAAAAAAAAGAGAGGTAAAGAAAGACAAGCAGACAAGAAAAAAAGACAAAAAGCAACAAAAGCAGATCCTAATTCCCATCAACCTTTGAGGTCCCAAATCATCTTATTTTATTTCAGCAAATCAAATATATGAATCTAATTGATTTTTTGTTTGTTTTGCACTTACAAAAAAAAGAAAAAAAAGAAGAGAAGGAGGAAATTAACCTTCGAAATTGTAACCAATGAAGCCATTGTTCGTCTTTTTTTTTTTTTTTTGGTTTCTCGAGTAGAGAAGATTTGAACCTATAACCTGTAAATATATGGTTTTTTTTCTTTATTCAGATAAATTATAAATCTGGTGTCGAAG

Coding sequence (CDS)

ATGAATATTTACACAGGGCAATCAGATTTATACGAGAATGCTTCATCAGGGGACACGAGCAATATTGAAGATATAATATTTGACATTCAAAAGCCAAGCATGGGAAGGCAAAATGAGCACTCAGTTCAACAAAATAGGCAAAACCCTCATCAAGATAAGGATTATCATGCCCTCTGGAGCAATTCTTCCAGGGAAGCTTGGTTGCATGGTTTTCCTAATGATTCTTCTAGGGACCTTTCATCGTCCCTCGAGAATGACGTGGATCCAAAGAGCTCAAACAACGAGAGACTATCGGAGATAAGCTCGTCGGGGAACCTTCCTCAGAAGCCTAATTTGGAATTCACATTAGGAAGGGCAGTTTGA

Protein sequence

MNIYTGQSDLYENASSGDTSNIEDIIFDIQKPSMGRQNEHSVQQNRQNPHQDKDYHALWSNSSREAWLHGFPNDSSRDLSSSLENDVDPKSSNNERLSEISSSGNLPQKPNLEFTLGRAV

Homology

[Close]

BLAST of CmoCh02G016770.1 vs. ExPASy Swiss-Prot
Match: Q9C616 (Probable transcription factor KAN2 OS=Arabidopsis thaliana OX=3702 GN=KAN2 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.3e-11
Identity = 54/120 (45.00%), Postives = 74/120 (61.67%), Query Frame = 0


Query: 5   TGQSDLYENASSGDTSNIEDIIFDIQKPSMGRQNEHSVQQNRQNPHQDKDYHALWSNSSR 64
           +GQSD+YEN SSGD +N +D +FD+ + S  R +E        NP +    + LW+NSS 
Sbjct: 278 SGQSDVYENGSSGD-NNSDDWMFDMNRKS--RDSEELT-----NPLEKS--NGLWTNSSG 337

Query: 65  EAWLHGFPNDSSRDLSSSLENDVDPKSSNNERLS--EISS---SGNLPQKPNLEFTLGRA 120
           EA LHG   D+  ++    E ++D K S+ ER+S  E+SS   SG  P KPNLEFTLGR+
Sbjct: 338 EARLHGKLIDNVAEIMLPSEKELDGKCSSYERISSEEMSSSSISGTSPFKPNLEFTLGRS 387

[Close]

BLAST of CmoCh02G016770.1 vs. ExPASy TrEMBL
Match: A0A6J1ETP5 (probable transcription factor KAN2 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437460 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.1e-56
Identity = 115/116 (99.14%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 5   TGQSDLYENASSGDTSNIEDIIFDIQKPSMGRQNEHSVQQNRQNPHQDKDYHALWSNSSR 64
           +GQSDLYENASSGDTSNIEDIIFDIQKPSMGRQNEHSVQQNRQNPHQDKDYHALWSNSSR
Sbjct: 256 SGQSDLYENASSGDTSNIEDIIFDIQKPSMGRQNEHSVQQNRQNPHQDKDYHALWSNSSR 315

Query: 65  EAWLHGFPNDSSRDLSSSLENDVDPKSSNNERLSEISSSGNLPQKPNLEFTLGRAV 121
           EAWLHGFPNDSSRDLSSSLENDVDPKSSNNERLSEISSSGNLPQKPNLEFTLGRAV
Sbjct: 316 EAWLHGFPNDSSRDLSSSLENDVDPKSSNNERLSEISSSGNLPQKPNLEFTLGRAV 371

[Close]

BLAST of CmoCh02G016770.1 vs. ExPASy TrEMBL
Match: A0A6J1K9Z3 (probable transcription factor KAN2 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111491441 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.0e-55
Identity = 113/116 (97.41%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 5   TGQSDLYENASSGDTSNIEDIIFDIQKPSMGRQNEHSVQQNRQNPHQDKDYHALWSNSSR 64
           +GQSDLYENASSGDTSNIEDIIFDIQKP+MGRQNEHSVQQNRQNPHQDKDYHALWSNSSR
Sbjct: 256 SGQSDLYENASSGDTSNIEDIIFDIQKPTMGRQNEHSVQQNRQNPHQDKDYHALWSNSSR 315

Query: 65  EAWLHGFPNDSSRDLSSSLENDVDPKSSNNERLSEISSSGNLPQKPNLEFTLGRAV 121
           EAWLHGFPNDSSRDLSSSLENDVDPKSSNNERLSEISSSGN+PQKPNLEFTLGRAV
Sbjct: 316 EAWLHGFPNDSSRDLSSSLENDVDPKSSNNERLSEISSSGNVPQKPNLEFTLGRAV 371

[Close]

BLAST of CmoCh02G016770.1 vs. ExPASy TrEMBL
Match: A0A6J1EYU6 (probable transcription factor KAN2 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111437460 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 5.1e-55
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 8   SDLYENASSGDTSNIEDIIFDIQKPSMGRQNEHSVQQNRQNPHQDKDYHALWSNSSREAW 67
           SDLYENASSGDTSNIEDIIFDIQKPSMGRQNEHSVQQNRQNPHQDKDYHALWSNSSREAW
Sbjct: 256 SDLYENASSGDTSNIEDIIFDIQKPSMGRQNEHSVQQNRQNPHQDKDYHALWSNSSREAW 315

Query: 68  LHGFPNDSSRDLSSSLENDVDPKSSNNERLSEISSSGNLPQKPNLEFTLGRAV 121
           LHGFPNDSSRDLSSSLENDVDPKSSNNERLSEISSSGNLPQKPNLEFTLGRAV
Sbjct: 316 LHGFPNDSSRDLSSSLENDVDPKSSNNERLSEISSSGNLPQKPNLEFTLGRAV 368

[Close]

BLAST of CmoCh02G016770.1 vs. ExPASy TrEMBL
Match: A0A6J1K7V2 (probable transcription factor KAN2 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111491441 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 2.5e-54
Identity = 111/113 (98.23%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 8   SDLYENASSGDTSNIEDIIFDIQKPSMGRQNEHSVQQNRQNPHQDKDYHALWSNSSREAW 67
           SDLYENASSGDTSNIEDIIFDIQKP+MGRQNEHSVQQNRQNPHQDKDYHALWSNSSREAW
Sbjct: 256 SDLYENASSGDTSNIEDIIFDIQKPTMGRQNEHSVQQNRQNPHQDKDYHALWSNSSREAW 315

Query: 68  LHGFPNDSSRDLSSSLENDVDPKSSNNERLSEISSSGNLPQKPNLEFTLGRAV 121
           LHGFPNDSSRDLSSSLENDVDPKSSNNERLSEISSSGN+PQKPNLEFTLGRAV
Sbjct: 316 LHGFPNDSSRDLSSSLENDVDPKSSNNERLSEISSSGNVPQKPNLEFTLGRAV 368

[Close]

BLAST of CmoCh02G016770.1 vs. ExPASy TrEMBL
Match: A0A6J1ET31 (probable transcription factor KAN2 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111437460 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 2.0e-51
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 14  ASSGDTSNIEDIIFDIQKPSMGRQNEHSVQQNRQNPHQDKDYHALWSNSSREAWLHGFPN 73
           ASSGDTSNIEDIIFDIQKPSMGRQNEHSVQQNRQNPHQDKDYHALWSNSSREAWLHGFPN
Sbjct: 254 ASSGDTSNIEDIIFDIQKPSMGRQNEHSVQQNRQNPHQDKDYHALWSNSSREAWLHGFPN 313

Query: 74  DSSRDLSSSLENDVDPKSSNNERLSEISSSGNLPQKPNLEFTLGRAV 121
           DSSRDLSSSLENDVDPKSSNNERLSEISSSGNLPQKPNLEFTLGRAV
Sbjct: 314 DSSRDLSSSLENDVDPKSSNNERLSEISSSGNLPQKPNLEFTLGRAV 360

[Close]

BLAST of CmoCh02G016770.1 vs. TAIR 10
Match: AT1G32240.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 68.9 bits (167), Expect = 3.1e-12
Identity = 54/120 (45.00%), Postives = 74/120 (61.67%), Query Frame = 0


Query: 5   TGQSDLYENASSGDTSNIEDIIFDIQKPSMGRQNEHSVQQNRQNPHQDKDYHALWSNSSR 64
           +GQSD+YEN SSGD +N +D +FD+ + S  R +E        NP +    + LW+NSS 
Sbjct: 278 SGQSDVYENGSSGD-NNSDDWMFDMNRKS--RDSEELT-----NPLEKS--NGLWTNSSG 337

Query: 65  EAWLHGFPNDSSRDLSSSLENDVDPKSSNNERLS--EISS---SGNLPQKPNLEFTLGRA 120
           EA LHG   D+  ++    E ++D K S+ ER+S  E+SS   SG  P KPNLEFTLGR+
Sbjct: 338 EARLHGKLIDNVAEIMLPSEKELDGKCSSYERISSEEMSSSSISGTSPFKPNLEFTLGRS 387

The following BLAST results are available for this feature:

BLAST of CmoCh02G016770.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C616	4.3e-11	45.00	Probable transcription factor KAN2 OS=Arabidopsis thaliana OX=3702 GN=KAN2 PE=2 ...	[more]

BLAST of CmoCh02G016770.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ETP5	2.1e-56	99.14	probable transcription factor KAN2 isoform X1 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1K9Z3	1.0e-55	97.41	probable transcription factor KAN2 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1EYU6	5.1e-55	100.00	probable transcription factor KAN2 isoform X2 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1K7V2	2.5e-54	98.23	probable transcription factor KAN2 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1ET31	2.0e-51	100.00	probable transcription factor KAN2 isoform X3 OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of CmoCh02G016770.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32240.1	3.1e-12	45.00	Homeodomain-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..80
None	No IPR available	PANTHER	PTHR31496:SF34	TRANSCRIPTION FACTOR KAN2-RELATED	coord: 5..117
IPR044847	Transcription repressor KANADI	PANTHER	PTHR31496	TRANSCRIPTION FACTOR KAN2-RELATED	coord: 5..117

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh02G016770	CmoCh02G016770	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh02G016770.1:exon:8919	CmoCh02G016770.1:exon:8919	exon
CmoCh02G016770.1:exon:8920	CmoCh02G016770.1:exon:8920	exon
CmoCh02G016770.1:exon:8921	CmoCh02G016770.1:exon:8921	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh02G016770.1:cds	CmoCh02G016770.1:cds	CDS
CmoCh02G016770.1:cds	CmoCh02G016770.1:cds_2	CDS
CmoCh02G016770.1:cds	CmoCh02G016770.1:cds_3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh02G016770.1:three_prime_utr	CmoCh02G016770.1:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh02G016770.1	CmoCh02G016770.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010158	abaxial cell fate specification
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000976	transcription cis-regulatory region binding