CmoCh02G015440.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G015440.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Protein of unknown function (DUF1442)
Location	Cmo_Chr02: 8952538 .. 8953637 (+)
Sequence length	273
RNA-Seq Expression	CmoCh02G015440.1
Synteny	CmoCh02G015440.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAATCTGAGTTCCAGAGGAGCGGTTTTGATCTGCAAGAACGCGAACTCGAGAAGCGATTCGAGTTTCAGATGGAGTAATGTTACCAATAACGGAACGCGGCGGCTGATTCGATCAGCGTTTTTGCCGGTGGGGCAGGGATTGGATATTGCATACGTGGCGGCGGAAGGAAGGAATTCAGGTTCCGGCGAGGGGAAGGGGAAATGGATCAAGCAGGTTGATCGACGATCAGGGGAGGAGTTTGTGATTCGGAAGTGATTTCTGTTCCGTCAAGCAAAGCGCTGTCGTTTTAGTTTTATACAGTTTTGTCCGTTTTCTTAATCATCATACTTATCAGATTGAGTGACAAATATATTGATTTTTTGTCTCGTTTTTGAGATGAACAGATTGTTGTTTTAAATTTTCTTACAAACAAGATGAGACAAAGTGAGTATACGCATTCAAATTTTGGTTGCATCTTTTGTAATAATACATGAACAAATGAAATTCAGACCTTCACAAAATGGAAAGATGGATGTTTTTTCCTCTAACCATATGGATTGCTTAATATGTATAATAATTCCATTGGTTATCACTTCCTTGCACCAGTGGAATTAGGTCAGATTATAGTTAAATACGCGTGGAGTGATTTACTTTGTTTATTAAAGTTGTTACATTTAAGTTATAGGAAGTGTACTAAGATGACATTAAATTTAGATCCATATCCATCACAAAGTTTTTAATGGGTGCATTGTCTAGATGAACATTCAAATGTATAATCAATAGTGACTAGCTAGAGTAGTACTAAATGCAACATTAAACCAATAAGTGCATCGTTGTTACATTGATAACCTCAACTTGATTATTGAATGTTTGGACGATAAGACCTGTACCTTTGTTAACTGATCATCGTTGAAGGTTTAAACCATTAAGCACTAGTTTAAGTTTGATGCTAGGCTTGACCATATCAACCCCTATCTCCTTGTTGAATTTTGCATTTGCCCAACATTCGGTGGCTTGTCGTTCTCGAATGTCATGGCCAATCAAAATTAAGGTAAAAGGGTTATACACATGATTTTTGATGATTTATTTGTTAATTTAGGTTGGGTAACTTTTAA

mRNA sequence

ATGGCGAATCTGAGTTCCAGAGGAGCGGTTTTGATCTGCAAGAACGCGAACTCGAGAAGCGATTCGAGTTTCAGATGGAGTAATGTTACCAATAACGGAACGCGGCGGCTGATTCGATCAGCGTTTTTGCCGGTGGGGCAGGGATTGGATATTGCATACGTGGCGGCGGAAGGAAGGAATTCAGGTTCCGGCGAGGGGAAGGGGAAATGGATCAAGCAGGTTGATCGACGATCAGGGGAGGAGTTTGTGATTCGGAAGTTGGGTAACTTTTAA

Coding sequence (CDS)

ATGGCGAATCTGAGTTCCAGAGGAGCGGTTTTGATCTGCAAGAACGCGAACTCGAGAAGCGATTCGAGTTTCAGATGGAGTAATGTTACCAATAACGGAACGCGGCGGCTGATTCGATCAGCGTTTTTGCCGGTGGGGCAGGGATTGGATATTGCATACGTGGCGGCGGAAGGAAGGAATTCAGGTTCCGGCGAGGGGAAGGGGAAATGGATCAAGCAGGTTGATCGACGATCAGGGGAGGAGTTTGTGATTCGGAAGTTGGGTAACTTTTAA

Protein sequence

MANLSSRGAVLICKNANSRSDSSFRWSNVTNNGTRRLIRSAFLPVGQGLDIAYVAAEGRNSGSGEGKGKWIKQVDRRSGEEFVIRKLGNF

Homology

[Close]

BLAST of CmoCh02G015440.1 vs. ExPASy TrEMBL
Match: A0A6J1KAR9 (uncharacterized protein LOC111491663 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111491663 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 3.8e-39
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1   MANLSSRGAVLICKNANSRSDSSFRWSNVTNNGTRRLIRSAFLPVGQGLDIAYVAAEGRN 60
           MANLSSRGAVLICKNANSRSDSSFRWSNVTNNGTRRLIRSAFLPVGQGLDIAYVAAEGRN
Sbjct: 131 MANLSSRGAVLICKNANSRSDSSFRWSNVTNNGTRRLIRSAFLPVGQGLDIAYVAAEGRN 190

Query: 61  SGSGEGKGKWIKQVDRRSGEEFVIRK 87
           SGSGEGKGKWIKQVDRRSGEEFVIRK
Sbjct: 191 SGSGEGKGKWIKQVDRRSGEEFVIRK 216

[Close]

BLAST of CmoCh02G015440.1 vs. ExPASy TrEMBL
Match: A0A6J1K8Q6 (uncharacterized protein LOC111491663 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111491663 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 3.8e-39
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1   MANLSSRGAVLICKNANSRSDSSFRWSNVTNNGTRRLIRSAFLPVGQGLDIAYVAAEGRN 60
           MANLSSRGAVLICKNANSRSDSSFRWSNVTNNGTRRLIRSAFLPVGQGLDIAYVAAEGRN
Sbjct: 96  MANLSSRGAVLICKNANSRSDSSFRWSNVTNNGTRRLIRSAFLPVGQGLDIAYVAAEGRN 155

Query: 61  SGSGEGKGKWIKQVDRRSGEEFVIRK 87
           SGSGEGKGKWIKQVDRRSGEEFVIRK
Sbjct: 156 SGSGEGKGKWIKQVDRRSGEEFVIRK 181

[Close]

BLAST of CmoCh02G015440.1 vs. ExPASy TrEMBL
Match: A0A6J1H1M1 (uncharacterized protein LOC111459536 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111459536 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 3.8e-39
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1   MANLSSRGAVLICKNANSRSDSSFRWSNVTNNGTRRLIRSAFLPVGQGLDIAYVAAEGRN 60
           MANLSSRGAVLICKNANSRSDSSFRWSNVTNNGTRRLIRSAFLPVGQGLDIAYVAAEGRN
Sbjct: 131 MANLSSRGAVLICKNANSRSDSSFRWSNVTNNGTRRLIRSAFLPVGQGLDIAYVAAEGRN 190

Query: 61  SGSGEGKGKWIKQVDRRSGEEFVIRK 87
           SGSGEGKGKWIKQVDRRSGEEFVIRK
Sbjct: 191 SGSGEGKGKWIKQVDRRSGEEFVIRK 216

[Close]

BLAST of CmoCh02G015440.1 vs. ExPASy TrEMBL
Match: A0A6J1H2M9 (uncharacterized protein LOC111459536 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111459536 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 3.8e-39
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1   MANLSSRGAVLICKNANSRSDSSFRWSNVTNNGTRRLIRSAFLPVGQGLDIAYVAAEGRN 60
           MANLSSRGAVLICKNANSRSDSSFRWSNVTNNGTRRLIRSAFLPVGQGLDIAYVAAEGRN
Sbjct: 96  MANLSSRGAVLICKNANSRSDSSFRWSNVTNNGTRRLIRSAFLPVGQGLDIAYVAAEGRN 155

Query: 61  SGSGEGKGKWIKQVDRRSGEEFVIRK 87
           SGSGEGKGKWIKQVDRRSGEEFVIRK
Sbjct: 156 SGSGEGKGKWIKQVDRRSGEEFVIRK 181

[Close]

BLAST of CmoCh02G015440.1 vs. ExPASy TrEMBL
Match: A0A6J1I4U3 (uncharacterized protein LOC111469161 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111469161 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 4.8e-34
Identity = 76/86 (88.37%), Postives = 81/86 (94.19%), Query Frame = 0


Query: 1   MANLSSRGAVLICKNANSRSDSSFRWSNVTNNGTRRLIRSAFLPVGQGLDIAYVAAEGRN 60
           +ANLSSRGAVLICKNANSRSDSSFRW NVT+NGTRRL+RS FLPVG+GLDIA+VAA G N
Sbjct: 131 LANLSSRGAVLICKNANSRSDSSFRWKNVTDNGTRRLVRSTFLPVGKGLDIAHVAAGGAN 190

Query: 61  SGSGEGKGKWIKQVDRRSGEEFVIRK 87
           SGSGEGKGKWIK VDRRSGEEFVIRK
Sbjct: 191 SGSGEGKGKWIKHVDRRSGEEFVIRK 216

[Close]

BLAST of CmoCh02G015440.1 vs. NCBI nr
Match: XP_022958256.1 (uncharacterized protein LOC111459536 isoform X1 [Cucurbita moschata] >KAG6606142.1 hypothetical protein SDJN03_03459, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036087.1 hypothetical protein SDJN02_02887, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 170.2 bits (430), Expect = 7.9e-39
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1   MANLSSRGAVLICKNANSRSDSSFRWSNVTNNGTRRLIRSAFLPVGQGLDIAYVAAEGRN 60
           MANLSSRGAVLICKNANSRSDSSFRWSNVTNNGTRRLIRSAFLPVGQGLDIAYVAAEGRN
Sbjct: 131 MANLSSRGAVLICKNANSRSDSSFRWSNVTNNGTRRLIRSAFLPVGQGLDIAYVAAEGRN 190

Query: 61  SGSGEGKGKWIKQVDRRSGEEFVIRK 87
           SGSGEGKGKWIKQVDRRSGEEFVIRK
Sbjct: 191 SGSGEGKGKWIKQVDRRSGEEFVIRK 216

[Close]

BLAST of CmoCh02G015440.1 vs. NCBI nr
Match: XP_022996438.1 (uncharacterized protein LOC111491663 isoform X1 [Cucurbita maxima])

HSP 1 Score: 170.2 bits (430), Expect = 7.9e-39
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1   MANLSSRGAVLICKNANSRSDSSFRWSNVTNNGTRRLIRSAFLPVGQGLDIAYVAAEGRN 60
           MANLSSRGAVLICKNANSRSDSSFRWSNVTNNGTRRLIRSAFLPVGQGLDIAYVAAEGRN
Sbjct: 131 MANLSSRGAVLICKNANSRSDSSFRWSNVTNNGTRRLIRSAFLPVGQGLDIAYVAAEGRN 190

Query: 61  SGSGEGKGKWIKQVDRRSGEEFVIRK 87
           SGSGEGKGKWIKQVDRRSGEEFVIRK
Sbjct: 191 SGSGEGKGKWIKQVDRRSGEEFVIRK 216

[Close]

BLAST of CmoCh02G015440.1 vs. NCBI nr
Match: XP_023533857.1 (uncharacterized protein LOC111795581 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 170.2 bits (430), Expect = 7.9e-39
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1   MANLSSRGAVLICKNANSRSDSSFRWSNVTNNGTRRLIRSAFLPVGQGLDIAYVAAEGRN 60
           MANLSSRGAVLICKNANSRSDSSFRWSNVTNNGTRRLIRSAFLPVGQGLDIAYVAAEGRN
Sbjct: 131 MANLSSRGAVLICKNANSRSDSSFRWSNVTNNGTRRLIRSAFLPVGQGLDIAYVAAEGRN 190

Query: 61  SGSGEGKGKWIKQVDRRSGEEFVIRK 87
           SGSGEGKGKWIKQVDRRSGEEFVIRK
Sbjct: 191 SGSGEGKGKWIKQVDRRSGEEFVIRK 216

[Close]

BLAST of CmoCh02G015440.1 vs. NCBI nr
Match: XP_023516665.1 (uncharacterized protein LOC111780476, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 170.2 bits (430), Expect = 7.9e-39
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1   MANLSSRGAVLICKNANSRSDSSFRWSNVTNNGTRRLIRSAFLPVGQGLDIAYVAAEGRN 60
           MANLSSRGAVLICKNANSRSDSSFRWSNVTNNGTRRLIRSAFLPVGQGLDIAYVAAEGRN
Sbjct: 114 MANLSSRGAVLICKNANSRSDSSFRWSNVTNNGTRRLIRSAFLPVGQGLDIAYVAAEGRN 173

Query: 61  SGSGEGKGKWIKQVDRRSGEEFVIRK 87
           SGSGEGKGKWIKQVDRRSGEEFVIRK
Sbjct: 174 SGSGEGKGKWIKQVDRRSGEEFVIRK 199

[Close]

BLAST of CmoCh02G015440.1 vs. NCBI nr
Match: XP_022958258.1 (uncharacterized protein LOC111459536 isoform X2 [Cucurbita moschata])

HSP 1 Score: 170.2 bits (430), Expect = 7.9e-39
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1   MANLSSRGAVLICKNANSRSDSSFRWSNVTNNGTRRLIRSAFLPVGQGLDIAYVAAEGRN 60
           MANLSSRGAVLICKNANSRSDSSFRWSNVTNNGTRRLIRSAFLPVGQGLDIAYVAAEGRN
Sbjct: 96  MANLSSRGAVLICKNANSRSDSSFRWSNVTNNGTRRLIRSAFLPVGQGLDIAYVAAEGRN 155

Query: 61  SGSGEGKGKWIKQVDRRSGEEFVIRK 87
           SGSGEGKGKWIKQVDRRSGEEFVIRK
Sbjct: 156 SGSGEGKGKWIKQVDRRSGEEFVIRK 181

[Close]

BLAST of CmoCh02G015440.1 vs. TAIR 10
Match: AT2G45360.1 (Protein of unknown function (DUF1442) )

HSP 1 Score: 83.2 bits (204), Expect = 1.2e-16
Identity = 44/85 (51.76%), Postives = 58/85 (68.24%), Query Frame = 0


Query: 2   ANLSSRGAVLICKNANSRSDSSFRWSNVTNNGTRRLIRSAFLPVGQGLDIAYVAAEGRNS 61
           A LS++GAVL+CKNA  R+ S F+W +V   GT R++RS FLPVG GLDI +V A GR  
Sbjct: 133 AKLSNKGAVLVCKNAMHRAISGFKWHDVLKRGT-RVVRSVFLPVGSGLDIVHVGATGRGD 192

Query: 62  GSGEGKGKWIKQVDRRSGEEFVIRK 87
            S   + +WI+ VD  SGEE + R+
Sbjct: 193 -SRNLRSRWIRHVDHLSGEEHLFRR 215

[Close]

BLAST of CmoCh02G015440.1 vs. TAIR 10
Match: AT3G60780.1 (Protein of unknown function (DUF1442) )

HSP 1 Score: 79.7 bits (195), Expect = 1.3e-15
Identity = 39/86 (45.35%), Postives = 56/86 (65.12%), Query Frame = 0


Query: 1   MANLSSRGAVLICKNANSRSDSSFRWSNVTNNGTRRLIRSAFLPVGQGLDIAYVAAEGRN 60
           +A  S  GAVL+CKNA  +S   F+W  +   GT R++RS FLPVG+GL+I +V A G  
Sbjct: 134 LAKTSKMGAVLVCKNATLKSIPGFKWQGLLRRGT-RVVRSVFLPVGRGLEIVHVGASGGG 193

Query: 61  SGSGEGKGKWIKQVDRRSGEEFVIRK 87
           +G  +   +WIK +D RSGEE + ++
Sbjct: 194 NGLRKIPSRWIKHIDPRSGEEHLFKR 218

[Close]

BLAST of CmoCh02G015440.1 vs. TAIR 10
Match: AT1G62840.1 (Protein of unknown function (DUF1442) )

HSP 1 Score: 70.5 bits (171), Expect = 7.9e-13
Identity = 42/88 (47.73%), Postives = 57/88 (64.77%), Query Frame = 0


Query: 2   ANLSSRGAVLICKNANSRSDSSFRWSNVTNNGTRRLIRSAFLPVGQGLDIAYVAAEGRNS 61
           A   SRGAV++C++   RS S F W+   ++  R ++R+  LPV  GL+IA+VAA  R+S
Sbjct: 140 AVFGSRGAVVVCRSGYRRSTSCFSWTKAFSD--RNVVRTVTLPVSGGLEIAHVAA-ARSS 199

Query: 62  GSGE---GKGKWIKQVDRRSGEEFVIRK 87
           G  +    K KWIK  D+RSGEE VIRK
Sbjct: 200 GKSDNNSNKRKWIKHFDQRSGEEHVIRK 224

[Close]

BLAST of CmoCh02G015440.1 vs. TAIR 10
Match: AT1G12320.1 (Protein of unknown function (DUF1442) )

HSP 1 Score: 57.4 bits (137), Expect = 6.9e-09
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 0


Query: 2   ANLSSRGAVLICKNANSRSDSSFRWSNVTNNGTRRLIRSAFLPVGQGLDIAYVAAEGRNS 61
           A   +RGAV++C+N  S      R         R+++R+  LPV  G++IA+VAA  RNS
Sbjct: 137 AAFGNRGAVVVCRNGYSSLRRVLR--------DRKVVRTVTLPVTGGIEIAHVAA--RNS 196

Query: 62  G-SGEGKGKWIKQVDRRSGEEFV 84
           G SG  K +WI  VD+RSGEE V
Sbjct: 197 GKSGNNKRRWITHVDQRSGEEHV 209

The following BLAST results are available for this feature:

BLAST of CmoCh02G015440.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh02G015440.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KAR9	3.8e-39	100.00	uncharacterized protein LOC111491663 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1K8Q6	3.8e-39	100.00	uncharacterized protein LOC111491663 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1H1M1	3.8e-39	100.00	uncharacterized protein LOC111459536 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1H2M9	3.8e-39	100.00	uncharacterized protein LOC111459536 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1I4U3	4.8e-34	88.37	uncharacterized protein LOC111469161 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of CmoCh02G015440.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022958256.1	7.9e-39	100.00	uncharacterized protein LOC111459536 isoform X1 [Cucurbita moschata] >KAG6606142...	[more]
XP_022996438.1	7.9e-39	100.00	uncharacterized protein LOC111491663 isoform X1 [Cucurbita maxima]	[more]
XP_023533857.1	7.9e-39	100.00	uncharacterized protein LOC111795581 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023516665.1	7.9e-39	100.00	uncharacterized protein LOC111780476, partial [Cucurbita pepo subsp. pepo]	[more]
XP_022958258.1	7.9e-39	100.00	uncharacterized protein LOC111459536 isoform X2 [Cucurbita moschata]	[more]

BLAST of CmoCh02G015440.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G45360.1	1.2e-16	51.76	Protein of unknown function (DUF1442)	[more]
AT3G60780.1	1.3e-15	45.35	Protein of unknown function (DUF1442)	[more]
AT1G62840.1	7.9e-13	47.73	Protein of unknown function (DUF1442)	[more]
AT1G12320.1	6.9e-09	44.58	Protein of unknown function (DUF1442)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009902	Protein of unknown function DUF1442	PFAM	PF07279	DUF1442	coord: 2..86 e-value: 9.3E-26 score: 90.5
IPR009902	Protein of unknown function DUF1442	PANTHER	PTHR33593	DUF1442 FAMILY PROTEIN	coord: 2..86
None	No IPR available	PANTHER	PTHR33593:SF2	ANKYRIN REPEAT/KH DOMAIN PROTEIN (DUF1442)	coord: 2..86

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh02G015440	CmoCh02G015440	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh02G015440.1:exon:8134	CmoCh02G015440.1:exon:8134	exon
CmoCh02G015440.1:exon:8135	CmoCh02G015440.1:exon:8135	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh02G015440.1:cds	CmoCh02G015440.1:cds	CDS
CmoCh02G015440.1:cds	CmoCh02G015440.1:cds_2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh02G015440.1	CmoCh02G015440.1-protein	polypeptide