CmoCh02G013990.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G013990.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr02: 8305458 .. 8307487 (-)
Sequence length	429
RNA-Seq Expression	CmoCh02G013990.1
Synteny	CmoCh02G013990.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACTGCATCATTGTTTAGCTTCCCCACACACTCATTGCTGTCTGATCCAAAGATTGTTATGGCTGTCGGAAGACATCCAAGCGGTGGTAATGTTGTTACTCCAATCCTCCTTGCTCCCAATGCATAAAGATTCTAAAAACAAACGTGGAAACCTCACTGTTTGTGAATATTATCTTCTTTAAACTTTTCTTTTCGGGTTTTCCCTTAAGAAACGCGTCTGCTAGGTAGAGGTTTCCATGCCCTTATAAGAAATGTTTCGTTCTCTTCTCCAACCAATGTGGGATCTCACAATCCACCCCTTTCGGGGCTAGCGTCCTCACTGACACATTGGCCAGTGACTGTCTCTGATACCATTTGTATCAGTCCAAGTCCACCGTTAGCAGATATTATCTTCTTTGAACTTTCTCTAAAATATTCGGATCGAAGGAGGAAGGGCAAAACCTGAATGAAGTTGACGTAGGAGGCGATGAGAATGTCAGCAAACTGAGTAACAGTATATTTCTTGTAAACCAGAGGATTCACGTAATAGTTCTGCAGAAAGTCATTGCTCCCCGCACTGACAAGGTAAATAGCACCAGATATGATGGCTGAAGCGTTGGTTTTGCCAGCAAATTCTGCTACTTTGTTCTGATACTCCTTGTAGTATTCCAGCTGCTGCGTTAGGGAAAGAGCATTCTACAATACCACAAGGCCAAACATGTTATTAATTATAGGAGCGGTGTCCAAGATCGATACTGTAACGGTCCAACTCCACCGCTAGTAGATATTGCCTCTTTAAGCTTTTCTTTTCGGGCTTCCCCTCATGGTTCACATAGAAGGGAACTAGTGCGCCTTGAAGAAGAGTGGATTGTGAGATCCCATGTTGGTTGGAGAGGGGACTCTCACTACCAGACGCGTTTTAAAAATCTTGAGAGGAAGAAGACAATATCTACTAGCGGTGGGCTTGAACCGTAGCTTTTGATTTAGAGTAGTATTACATATAGGTGTGCTGTTGTGTCAAGGTATCCAGAAGCAGCTGAGGCAAAGCTTGCTCCAATCAGGAGGTTCTTTCCTCCTGCTTCACCCAGGTAAGCTTGTGGGTAAGATGTAAATCCCAAGTACTCAGCTGTTCACAAGGCAACAAAAGAACTTATTAGATCATCGACTCATGGACTCATGGACTCAACGTATCAGTCAAAGTCTACCGTTAATAGATATTGTCTTCTTTAAACTTTCACTCAAAGTTTTTAAAACGTGTCTCTAGAGATGAGTTTTCACCCCTTTATAAAGAAGATTCATTTTTCTCCCCAACCGATGTAGGATCTCACAATCTACCCCTTTAGAGACCCAACGATCCCTTCAAGGGCTTCCCTAGACGCGTTTTAAAACTTTAAGAGGAAGCCCTTATAGTGAAAACCCAAAAAGACAATATTTACTAGTGATGAGTTTGGGCCGTTACAAATAGTATCAGAACCAAATATCAGGCTGGTATGCAAGATCCTATATTGGTTGAAAAGGAGAACCAATCAATCTCTATAAGAGTGTGAAAACTTGTTTGTAGTAGAGTGTTTTAAAACCACGAGGGCCTATACATAACGGGCCAACACATAGAATATCTACTAACGCTCATAGTTTGTATATAAACATAAGTAAATGAAATGAGGTTCTAAAATTGAAAGCACCAGTGAAATCTGAGGCAAGTTTTCCATTGCAGAACCGTCCGGTGGGGTTGTGAGTAACAAAATCCCTCCCATAAGGGGGAAAGTTAGCTTTCATGAGGGTTTTGAGGTGATTGTTGATGCCCACATCAAGAACAGAGTCCCCAAATGTGAACATTGCAGGAACCAGTGGCTGCCCATTTGCCAGAGATTGGCTCACAGGCGCAAGGAGAAGGAAGAAAATGGGTAAACAAGTCACATCCATGAGTGTCCAGTGAGGTTGCTTGAAAAACAATAGCCAAGAACAGAGATTTAAATGGTTTGTAAAGTTCATACGCTCAAGAAATCTGATCATTTACAGCTTGGTATGTATCAATTATGTTCATTAA

mRNA sequence

ATGAAACTGCATCATTGTTTAGCTTCCCCACACACTCATTGCTGTCTGATCCAAAGATTGTTATGGCTGTCGGAAGACATCCAAGCGGTGAGGATTCACGTAATAGTTCTGCAGAAAGTCATTGCTCCCCGCACTGACAAGAAGCAGCTGAGGCAAAGCTTGCTCCAATCAGGAGGTTCTTTCCTCCTGCTTCACCCAGGTAAGCTTGTGGAACCGTCCGGTGGGGTTGTGAGTAACAAAATCCCTCCCATAAGGGGGAAAGTTAGCTTTCATGAGGGTTTTGAGGTGATTGTTGATGCCCACATCAAGAACAGAGTCCCCAAATGTGAACATTGCAGGAACCAGTGGCTGCCCATTTGCCAGAGATTGGCTCACAGGCGCAAGGAGAAGGAAGAAAATGGCTTGGTATGTATCAATTATGTTCATTAA

Coding sequence (CDS)

ATGAAACTGCATCATTGTTTAGCTTCCCCACACACTCATTGCTGTCTGATCCAAAGATTGTTATGGCTGTCGGAAGACATCCAAGCGGTGAGGATTCACGTAATAGTTCTGCAGAAAGTCATTGCTCCCCGCACTGACAAGAAGCAGCTGAGGCAAAGCTTGCTCCAATCAGGAGGTTCTTTCCTCCTGCTTCACCCAGGTAAGCTTGTGGAACCGTCCGGTGGGGTTGTGAGTAACAAAATCCCTCCCATAAGGGGGAAAGTTAGCTTTCATGAGGGTTTTGAGGTGATTGTTGATGCCCACATCAAGAACAGAGTCCCCAAATGTGAACATTGCAGGAACCAGTGGCTGCCCATTTGCCAGAGATTGGCTCACAGGCGCAAGGAGAAGGAAGAAAATGGCTTGGTATGTATCAATTATGTTCATTAA

Protein sequence

MKLHHCLASPHTHCCLIQRLLWLSEDIQAVRIHVIVLQKVIAPRTDKKQLRQSLLQSGGSFLLLHPGKLVEPSGGVVSNKIPPIRGKVSFHEGFEVIVDAHIKNRVPKCEHCRNQWLPICQRLAHRRKEKEENGLVCINYVH

Homology

The following BLAST results are available for this feature:

BLAST of CmoCh02G013990.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh02G013990.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh02G013990.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh02G013990.1 vs.


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh02G013990	CmoCh02G013990	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh02G013990.1:exon:8445	CmoCh02G013990.1:exon:8445	exon
CmoCh02G013990.1:exon:8446	CmoCh02G013990.1:exon:8446	exon
CmoCh02G013990.1:exon:8447	CmoCh02G013990.1:exon:8447	exon
CmoCh02G013990.1:exon:8448	CmoCh02G013990.1:exon:8448	exon
CmoCh02G013990.1:exon:8449	CmoCh02G013990.1:exon:8449	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh02G013990.1:cds	CmoCh02G013990.1:cds_5	CDS
CmoCh02G013990.1:cds	CmoCh02G013990.1:cds_4	CDS
CmoCh02G013990.1:cds	CmoCh02G013990.1:cds_3	CDS
CmoCh02G013990.1:cds	CmoCh02G013990.1:cds_2	CDS
CmoCh02G013990.1:cds	CmoCh02G013990.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh02G013990.1	CmoCh02G013990.1-protein	polypeptide