CmoCh02G013970.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G013970.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	protein RETICULATA-RELATED 1, chloroplastic-like
Location	Cmo_Chr02: 8292224 .. 8296147 (-)
Sequence length	1497
RNA-Seq Expression	CmoCh02G013970.1
Synteny	CmoCh02G013970.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTTATTTTCTTCTCTCTGTAATCATTTCCGCCGATTCCTTGTAGTTTTTTGCTTCTCCTCCAAACACAATTTAGGTTTTTGGTTTCTGATCGTTTTTCTTACACATTCTTCAAGTCGTCAACCATTTATTTCTAGGGCCTGCCGTTCTTGCAAAGATAGCTGCCATTAATATGTCACTAACCTCGCCCTGCTTCAATCTCATCCATTCCGCCGTTACTTCCACCCCAGATGCCTTTCCTTCGAAACTCGAAGTTAGAGCTTCGGGATGCTTTACATGGCCTTGTTCTGAATCCAGGAGCTCCTTTAAGGTTGTTTCTCTTCATTATTCATCGAATGTGAGCTGCCGGATTCCACTTCAGTGTTTTTCGTCCGAGGCGGCGGCTGAGACGATCGCGGCGGCGAACGACTCTAAGGTCTTTGATACTGATTTTGAATCTCGAATAGGTGGGGATGGTGGTTTTGGAGGAGATGGAAATGGTTTTGGTGGCAGCGGCGGCGGCGGCGATGGAAATGGTGATGGCGAGGAGGAGAGGGAGTTTGGACGGATATTGAAATTCGACGACGTGATCAAGGAGGCTGACGCTCGAGGAGTTAGACTTCCTGAGGATATGCTCGAGGCTGCTAAGGCAACCGGGATACGGGAAGTTTTTCTTCAGCGTTACTTGGACTTGCAGGTACAATCCATTTCTCAAGTTCGTGAAAGTAAATGAATCGAAAGCATCATGCGTAGCACTTGAAACTGTTGCATGCCTGTCGCTCTTGTGCTTGCTGTTTTAACAACTCCTTGCAGGATTACCTTATTTGTTTCACTGTTCTTTAGGGTGAAATTCAACAAAGCAATTGTTATCAGCTGTAAATTCAGCATCCTCAAGAGATTTTTGTTGATTTGTGGGACATGAAGAACGTTTTTGAGAATGAGATTGTGCTGGATATGTAAAACTTTTCTCATATAATTGAACAAACCATTAGTTTCATTGTCCTGTCACCATGATTCTCCTTTAAATCTCTCTATTTTCCCTCATGTATATATCAGTTAGAATCCTTCTCCCCTTCATCCTTTCGAAATTGGTGGTGTATGATTGCTTTTTGCTTGAGCATAAAGATGATTTTTTTTTTCTAATTTTGAAAACAAATATCTATCAAAATAATGAAGGAAATTTTCTTTTGGTGTTTTACAGGGGTCAGGTTGGTTGTTAGGCTTCTTGATGAATTCCTGCTCCATGTTTCGTGACCGAATGCTAGCAGATCCTTCTTTTCTTTTTAAAGTCGGAACAGAGGTTTGTTTTGGTGTTATTAAAATTCAATGCAAGCTAATGATCCACAACTCTCGCTGTAGTTTTGCATTGCTAGCAATGAGTTAATTTTCTCCTATAGTTGCTAATTGTTGACATTTATAGCAGCGAGAGAAATCACATTGTTGGCATTTAAATTCAGGATTTGAGAACCTTGATTATATGTTCTAACCGATACCATACCTTGGCAGTTCTCTTTGATCAATTCTCAGATGACTTGTTGATTAATTGTAAAATACAATTCCCAATTAATGGATCTAATGAGCTTTGCTGATGCAGGTGGTTATAGATTCATGCTGTGCTACATTTGCTGAAGTTCAGAAAAGGGGAGAGAATTTCTGGGCAGAGTTTGAGTTATTTGCTGCTGATCTTTTAGTTGGTGTTGTGGTTGACATTGCTTTGGTTGGTATGTTAGCACCATATGCTCGTATAGGACAGCGGCCTGTTTCAAGAGGTTTATTAGGACAAATGCAGCGTGCTTATTCTTCTCTTCCTAGCAGGTTAATATTACATGACATGTTTTATGATGAAATTTTCAGTACCCTTATAAGTTCCAGACTTGTAGTTCCCTTGTTACCTTCTTTTATATTTTATTTAGTTCTTGCTGCTGTATGCTTGACAAAGTTTCTTGAGCCACTACTTTGTTTAGTATATATTTTTTTCTTTTGAAGATGAGATGATATTCTCTAAACATTGGACGGAAAATCAGTCTCTCCGATATTTGGCCTCAATTTGCTGACCATTCTCAATTTTCTTTGAATTTAGAATTTCCACGCTCCATCTTGACTTCTATAATTAATTACCCTTTTTTTGCCTCTGCAGTGTTTTTGAAGCTGAAAGGCCCGGGTGTAAATTCACAGTGAAGCAGCGAATTGCATCATTTTTCTATAAGGTACTGATTTCATTTTTTTAAAGCAATTGAAGTTACTTTCTCATCCTTGTTTCTTTATCTTGTTTTGGAACTTAGTTTTCGAGGTATGGCTTTGTTTTTCTTGTTACTGCTGTATCATTGGTCCATTTTTGTCCAGGGTGTCTTGTATGGCTCAGTGGGATTTGGATGTGGTCTCATTGGCCAGGGGATTGCTAATTTGATCATGAACACAAAACGGTAAGCTTGCTTAAATATGTCTTGCATGCCTTGTTTTCTACTTTATTAGACTACCCTATATTTTTAAATTGGTCATGTAGTTGTTTACCTTAAAAAGAAGTTCACCTGTTGGTGTTGATCAACCCATGAACTTTGATTTGTTCTTCGACTGATGTGTGTTTTTAGAACAGATGTGCCATTGTCACAATCCATTTCTGATGATTGATTATAGACCGATTGATGTAGGACACACTAAAAAATTACAGTTAACCGAGGAGTTGAATATGACATAGTTCTAAAATGATAGTAAAATATACAAGTACAGAATGTGGGGCTCCCAAAATCTTGTGTCTGCTTTGAATTGTCATAAAAAGTTAGGCATAAGATTCCAATTTTTTGTATTGCTTTAGTCATTAATTTTATAATTTCTCGGATATAACTGTTAGCTATAGAAAAAAGAATATAAAGATATAGCTGATGCTTTTTGCTTTGTATTTATTTCTAGTTTGTCGAATTATATTTTTCTATCATTCTTCATTTGTCCCTCGAATCTTTTCGAAAATGACATGTCGTCTGATTGCATGTGTTGTATACTTGCCTTAAAGAACCTTGAATCTATCATGTCATCTGTTCCCTCCAAGTTGTTGAAGACCTATTTCAATGTTTGAAATACTTGATTATGAATTATGATAACCGTAAAAATTTAAAATATCTTTTGATTTATACATTAGATGACCATTATATCTCTGTCTTGATATTTATCTTAGGAACTGTATTTAATGATTCAGGTGTATAAAGAAATCAGATGAGGATGTGCCTGTGCCTCCTCTCGTTCAGAGTGCCGTTCTCTGGGGTATACATCTCATCTGTTCCTTGAATCCTCACTATTTTACTTTACTAATCTGTTTTGTCTTAATATAAGTAGGTTCACGTTCTTCTAAATTAATCTGAACCAATTTAGCTTAATACATCATCAATAATTTAGCTAAATTGTGATTCCTAGTCCGTAGTTTGGTGCACAAGTCACTCATTTCTTAGGATCTTACTTACTGGCCCTCCCATTTACTTTTATTAAACGTAAGTTTTGGTCAAGTTTCAACCTGGAATCGATATCAAATTCTTGCTGGAAAGCTTAACCAAAAGCCCCCTTAGTTTTATCAGTCTGTTCTGTTCTATCCTCATGTCAACTACAACCTGCAGACTACTTTTATATATGTTAATTTAGTAACTCTAAAGCTTCTATTGTCCCTGATTCAGGTGTTTTCCTTGCGGTATCTTCCAACACTCGTTATCAAATTGTGAACGCACTCGAGCAGGTGGTCGAATTCTCGCCTTTGGCAAAGAAGATTCCACCGGTGGCAATGGCCTTCACAGTTGGTGTGAGGTTTGCCAACAACATTTATGGTGGTATGCAGTTTGTGGATTGGGCAAGATGGAGTGGTGTTCAATAAATTTAACATGCTGCATTCATTAGCCTTAATCTTTTTCTTTTTCTTTTTTTCTTTTTTTTTAAAAAAGCCTTAATCTGTAAGCTTTAGGTTAG

mRNA sequence

TATTTATTTTCTTCTCTCTGTAATCATTTCCGCCGATTCCTTGTAGTTTTTTGCTTCTCCTCCAAACACAATTTAGGTTTTTGGTTTCTGATCGTTTTTCTTACACATTCTTCAAGTCGTCAACCATTTATTTCTAGGGCCTGCCGTTCTTGCAAAGATAGCTGCCATTAATATGTCACTAACCTCGCCCTGCTTCAATCTCATCCATTCCGCCGTTACTTCCACCCCAGATGCCTTTCCTTCGAAACTCGAAGTTAGAGCTTCGGGATGCTTTACATGGCCTTGTTCTGAATCCAGGAGCTCCTTTAAGGTTGTTTCTCTTCATTATTCATCGAATGTGAGCTGCCGGATTCCACTTCAGTGTTTTTCGTCCGAGGCGGCGGCTGAGACGATCGCGGCGGCGAACGACTCTAAGGTCTTTGATACTGATTTTGAATCTCGAATAGGTGGGGATGGTGGTTTTGGAGGAGATGGAAATGGTTTTGGTGGCAGCGGCGGCGGCGGCGATGGAAATGGTGATGGCGAGGAGGAGAGGGAGTTTGGACGGATATTGAAATTCGACGACGTGATCAAGGAGGCTGACGCTCGAGGAGTTAGACTTCCTGAGGATATGCTCGAGGCTGCTAAGGCAACCGGGATACGGGAAGTTTTTCTTCAGCGTTACTTGGACTTGCAGGGGTCAGGTTGGTTGTTAGGCTTCTTGATGAATTCCTGCTCCATGTTTCGTGACCGAATGCTAGCAGATCCTTCTTTTCTTTTTAAAGTCGGAACAGAGGTGGTTATAGATTCATGCTGTGCTACATTTGCTGAAGTTCAGAAAAGGGGAGAGAATTTCTGGGCAGAGTTTGAGTTATTTGCTGCTGATCTTTTAGTTGGTGTTGTGGTTGACATTGCTTTGGTTGGTATGTTAGCACCATATGCTCGTATAGGACAGCGGCCTGTTTCAAGAGGTTTATTAGGACAAATGCAGCGTGCTTATTCTTCTCTTCCTAGCAGTGTTTTTGAAGCTGAAAGGCCCGGGTGTAAATTCACAGTGAAGCAGCGAATTGCATCATTTTTCTATAAGGGTGTCTTGTATGGCTCAGTGGGATTTGGATGTGGTCTCATTGGCCAGGGGATTGCTAATTTGATCATGAACACAAAACGGTGTATAAAGAAATCAGATGAGGATGTGCCTGTGCCTCCTCTCGTTCAGAGTGCCGTTCTCTGGGGTGTTTTCCTTGCGGTATCTTCCAACACTCGTTATCAAATTGTGAACGCACTCGAGCAGGTGGTCGAATTCTCGCCTTTGGCAAAGAAGATTCCACCGGTGGCAATGGCCTTCACAGTTGGTGTGAGGTTTGCCAACAACATTTATGGTGGTATGCAGTTTGTGGATTGGGCAAGATGGAGTGGTGTTCAATAAATTTAACATGCTGCATTCATTAGCCTTAATCTTTTTCTTTTTCTTTTTTTCTTTTTTTTTAAAAAAGCCTTAATCTGTAAGCTTTAGGTTAG

Coding sequence (CDS)

ATGTCACTAACCTCGCCCTGCTTCAATCTCATCCATTCCGCCGTTACTTCCACCCCAGATGCCTTTCCTTCGAAACTCGAAGTTAGAGCTTCGGGATGCTTTACATGGCCTTGTTCTGAATCCAGGAGCTCCTTTAAGGTTGTTTCTCTTCATTATTCATCGAATGTGAGCTGCCGGATTCCACTTCAGTGTTTTTCGTCCGAGGCGGCGGCTGAGACGATCGCGGCGGCGAACGACTCTAAGGTCTTTGATACTGATTTTGAATCTCGAATAGGTGGGGATGGTGGTTTTGGAGGAGATGGAAATGGTTTTGGTGGCAGCGGCGGCGGCGGCGATGGAAATGGTGATGGCGAGGAGGAGAGGGAGTTTGGACGGATATTGAAATTCGACGACGTGATCAAGGAGGCTGACGCTCGAGGAGTTAGACTTCCTGAGGATATGCTCGAGGCTGCTAAGGCAACCGGGATACGGGAAGTTTTTCTTCAGCGTTACTTGGACTTGCAGGGGTCAGGTTGGTTGTTAGGCTTCTTGATGAATTCCTGCTCCATGTTTCGTGACCGAATGCTAGCAGATCCTTCTTTTCTTTTTAAAGTCGGAACAGAGGTGGTTATAGATTCATGCTGTGCTACATTTGCTGAAGTTCAGAAAAGGGGAGAGAATTTCTGGGCAGAGTTTGAGTTATTTGCTGCTGATCTTTTAGTTGGTGTTGTGGTTGACATTGCTTTGGTTGGTATGTTAGCACCATATGCTCGTATAGGACAGCGGCCTGTTTCAAGAGGTTTATTAGGACAAATGCAGCGTGCTTATTCTTCTCTTCCTAGCAGTGTTTTTGAAGCTGAAAGGCCCGGGTGTAAATTCACAGTGAAGCAGCGAATTGCATCATTTTTCTATAAGGGTGTCTTGTATGGCTCAGTGGGATTTGGATGTGGTCTCATTGGCCAGGGGATTGCTAATTTGATCATGAACACAAAACGGTGTATAAAGAAATCAGATGAGGATGTGCCTGTGCCTCCTCTCGTTCAGAGTGCCGTTCTCTGGGGTGTTTTCCTTGCGGTATCTTCCAACACTCGTTATCAAATTGTGAACGCACTCGAGCAGGTGGTCGAATTCTCGCCTTTGGCAAAGAAGATTCCACCGGTGGCAATGGCCTTCACAGTTGGTGTGAGGTTTGCCAACAACATTTATGGTGGTATGCAGTTTGTGGATTGGGCAAGATGGAGTGGTGTTCAATAA

Protein sequence

MSLTSPCFNLIHSAVTSTPDAFPSKLEVRASGCFTWPCSESRSSFKVVSLHYSSNVSCRIPLQCFSSEAAAETIAAANDSKVFDTDFESRIGGDGGFGGDGNGFGGSGGGGDGNGDGEEEREFGRILKFDDVIKEADARGVRLPEDMLEAAKATGIREVFLQRYLDLQGSGWLLGFLMNSCSMFRDRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGENFWAEFELFAADLLVGVVVDIALVGMLAPYARIGQRPVSRGLLGQMQRAYSSLPSSVFEAERPGCKFTVKQRIASFFYKGVLYGSVGFGCGLIGQGIANLIMNTKRCIKKSDEDVPVPPLVQSAVLWGVFLAVSSNTRYQIVNALEQVVEFSPLAKKIPPVAMAFTVGVRFANNIYGGMQFVDWARWSGVQ

Homology

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BLAST of CmoCh02G013970.1 vs. ExPASy Swiss-Prot
Match: Q9FGP9 (Protein RETICULATA-RELATED 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RER1 PE=1 SV=1)

HSP 1 Score: 467.2 bits (1201), Expect = 1.9e-130
Identity = 260/412 (63.11%), Postives = 308/412 (74.76%), Query Frame = 0


Query: 25  KLEVRASGCF-TWPCSESRSSFKVVSLHYSSNVSCR-IPLQCFSSEAAAETI-------- 84
           + E+R S CF   P  ESR       +H +S++S R +  +C  S+     I        
Sbjct: 29  RFEIR-SVCFRRSPGVESR------RIHLNSDLSSRNLRNRCVGSDVVTGEISGRSIPDW 88

Query: 85  --AAANDSKVFD--TDFESRIGGDGGFGGDGNGFGGSGGGGDGNGDGE-----------E 144
             +   D  + D   + +   GGD     DG G GG+G GG G GDGE           E
Sbjct: 89  AYSGVKDETLSDLEPELDDGDGGDENGNNDGGGNGGNGDGGGGGGDGEGDDGEDEADKAE 148

Query: 145 EREFGRILKFDDVIKEADARGVRLPEDMLEAAKATGIREVFLQRYLDLQGSGWLLGFLMN 204
           E+EFG ILKF++V+KE + RG+ LPEDMLEAAK+ GIR++FL RYLDLQGS W LGFLM 
Sbjct: 149 EKEFGPILKFEEVMKETERRGITLPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLMR 208

Query: 205 SCSMFRDRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGENFWAEFELFAADLLVGVVVD 264
           SC+M R+RMLADPSFLFKVGTEV IDSCCATFAEVQKRGE+FW+EFEL+AADLLVG+VVD
Sbjct: 209 SCAMLRNRMLADPSFLFKVGTEVAIDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVVD 268

Query: 265 IALVGMLAPYARIGQRPV-SRGLLGQMQRAYSSLPSSVFEAERPGCKFTVKQRIASFFYK 324
           +ALVG+LAPYARIG+  V S GL   ++RA +SLPSSVFEAERPGCKF+V QRIA+FFYK
Sbjct: 269 VALVGLLAPYARIGKPSVASTGLFKDLKRACASLPSSVFEAERPGCKFSVNQRIATFFYK 328

Query: 325 GVLYGSVGFGCGLIGQGIANLIMNTKRCIKKSDEDVPVPPLVQSAVLWGVFLAVSSNTRY 384
           G+LYGSVGFGCGLIGQGIANLIM  KR +KKS+EDVP+PPL +SA LWGVFL +SSN RY
Sbjct: 329 GLLYGSVGFGCGLIGQGIANLIMTAKRSVKKSEEDVPIPPLFESAALWGVFLGLSSNARY 388

Query: 385 QIVNALEQVVEFSPLAKKIPPVAMAFTVGVRFANNIYGGMQFVDWARWSGVQ 411
           QI+N LE+VVE S  AK+IP VAMAFTVGVRFANN+YGGMQFVDWA+ SGVQ
Sbjct: 389 QIINGLERVVEGSTAAKRIPVVAMAFTVGVRFANNVYGGMQFVDWAKLSGVQ 433

[Close]

BLAST of CmoCh02G013970.1 vs. ExPASy Swiss-Prot
Match: B9DFK5 (Protein RETICULATA, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RE PE=1 SV=1)

HSP 1 Score: 453.8 bits (1166), Expect = 2.1e-126
Identity = 237/358 (66.20%), Postives = 280/358 (78.21%), Query Frame = 0


Query: 69  AAAETIAAANDSKVFDTDFESRIG-------------GDGGFGGDGNGFGGSGG-GGDGN 128
           AA E I    D+ +   D    +G             GDG  G DGNG GG GG GG+G+
Sbjct: 75  AATEQIKGEGDNSILGKDNVRNLGTDQLENLDIDGNVGDGFNGSDGNGGGGGGGNGGEGD 134

Query: 129 GDGE--EEREFGRILKFDDVIKEADARGVRLPEDMLEAAKATGIREVFLQRYLDLQGSGW 188
           G+GE  EE+EFG ILKF++V+KE +ARG  LP DMLEAAK  GIR+V L RYLDLQ S  
Sbjct: 135 GEGEDYEEKEFGPILKFEEVMKETEARGATLPSDMLEAAKNYGIRKVLLLRYLDLQSSAG 194

Query: 189 LLGFLMNSCSMFRDRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGENFWAEFELFAADL 248
           LLGF + S +M R+RMLADPSFLFK+G E+VIDSCCAT AEVQKRG++FWAEFEL+ ADL
Sbjct: 195 LLGFAIRSWAMLRNRMLADPSFLFKIGAEIVIDSCCATVAEVQKRGKDFWAEFELYVADL 254

Query: 249 LVGVVVDIALVGMLAPYARIGQRPVSRGLLGQMQRAYSSLPSSVFEAERPGCKFTVKQRI 308
           LVG VV+IALVGMLAPY R GQ   S G LG+M  AY++LPSSVFEAERPGC+F+ +QR+
Sbjct: 255 LVGTVVNIALVGMLAPYVRFGQPSASPGFLGRMVFAYNALPSSVFEAERPGCRFSAQQRL 314

Query: 309 ASFFYKGVLYGSVGFGCGLIGQGIANLIMNTKRCIKKSDEDVPVPPLVQSAVLWGVFLAV 368
           A++FYKG++YG+VGFGCG++GQGIANLIM  KR I KS+E++PVPPL++SA LWGVFL+V
Sbjct: 315 ATYFYKGIMYGAVGFGCGIVGQGIANLIMTAKRNINKSEENIPVPPLIKSAALWGVFLSV 374

Query: 369 SSNTRYQIVNALEQVVEFSPLAKKIPPVAMAFTVGVRFANNIYGGMQFVDWARWSGVQ 411
           SSNTRYQI+N LE+VVE SP AKK PP AMAFTVGVR ANNIYGGMQFVDWAR SG Q
Sbjct: 375 SSNTRYQIINGLERVVEASPFAKKFPPAAMAFTVGVRLANNIYGGMQFVDWARLSGCQ 432

[Close]

BLAST of CmoCh02G013970.1 vs. ExPASy Swiss-Prot
Match: Q94CJ5 (Protein RETICULATA-RELATED 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RER4 PE=2 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.3e-32
Identity = 104/331 (31.42%), Postives = 169/331 (51.06%), Query Frame = 0


Query: 89  SRIGGDGGFGGDGNGFGGSGGGG-----DGNGDGEEEREFGRILKFDDVIKEADARGVRL 148
           S   G+GG   +G G  G GGGG     DG+G G+E+R+  R  +   ++KE+      L
Sbjct: 61  SASSGNGGSDNNGGGLSGGGGGGDGGKNDGDGHGDEDRDRNR-NEAMLLLKESGIELESL 120

Query: 149 PEDMLEAAKATGIREVFLQRYLDLQGSG---WLLGFLMNSCSMFRDRMLADPSFLFKVGT 208
           P+D+  A +A  I    + R+L+LQ S    WL+ F       FR+R+LAD  F+ K+  
Sbjct: 121 PKDLAAAIEAGRIPGSVITRFLELQKSAVMRWLMQF-----GGFRERLLADDLFMAKLAM 180

Query: 209 EVVIDSCCATFAEVQKRGENFWAEFELFAADLLVGVVVDIALVGMLAPYARIGQRPVSRG 268
           E  +     T AE ++R ENF+ E E+  AD+ + ++ D  LV + AP   +  RP    
Sbjct: 181 ECGVGIFTKTAAEYERRRENFFNELEVVFADVAMAIIADFMLVYLPAP--TVSLRPPLAL 240

Query: 269 LLGQMQRAYSSLPSSVFEAERPGCKFTVKQRIASFFYKGVLYGSVGFGCGLIGQGIANLI 328
             G + + + + P + F+    G  +T+ QR+ +    G    +VG    L+G  I N  
Sbjct: 241 TAGGISKFFHNCPDNAFQVALSGTSYTLLQRLGAITRNGAKLFAVGTTSSLVGTAITNAF 300

Query: 329 MNTKRCIKKSDE-DVPVPPLVQSAVLWGVFLAVSSNTRYQIVNALEQVVEFSPLAKKIPP 388
           +  ++ + ++ E +V   P+V ++V +GV++AVSSN RYQIV  + +     P+  +   
Sbjct: 301 IKARKAVDQNSEGEVETVPIVSTSVAYGVYMAVSSNLRYQIVAGVIEQRLLEPMLHQHKL 360

Query: 389 VAMAFTVGVRFANNIYGGMQFVDWARWSGVQ 411
              A    VR  N   G + +VD+AR  G+Q
Sbjct: 361 ALSALCFAVRTGNTFLGSLLWVDYARLIGIQ 383

[Close]

BLAST of CmoCh02G013970.1 vs. ExPASy Swiss-Prot
Match: Q9C9Z2 (Protein RETICULATA-RELATED 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RER3 PE=1 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 7.1e-21
Identity = 100/321 (31.15%), Postives = 141/321 (43.93%), Query Frame = 0


Query: 93  GDGGFGGDGNGFGGSGGGGDGNGDGEEEREFGRILKFDDVIKEADARGVRLPEDMLEAAK 152
           G GG G  GN  GGSG GG G G G    E                          E + 
Sbjct: 61  GGGGGGSTGNNGGGSGSGGGGGGFGGSGGEAS------------------------EESS 120

Query: 153 ATGIREVFLQRYLDLQGSGWLLGFLMNSCSMFRDRMLADPSFLFKVGTEVVIDSCCATFA 212
             G   +F+Q        GW            R R+ ADP F FKV  E ++        
Sbjct: 121 PWGPIGLFIQ--------GW------------RSRVAADPQFPFKVLMEEIVGLSACVLG 180

Query: 213 EVQKRGENFWAEFELFAADLLVGVVVDIALVGMLAPYARIGQRPVSRGLLGQMQRAYSSL 272
           ++  R      E +   + L+VG +++  L+ MLAP A       + G    +   + + 
Sbjct: 181 DMASRPNFGLNELDFVFSTLVVGSILNFVLMYMLAPTA------ATLGSSQTLPGIFRNC 240

Query: 273 PSS-VFEAERPGCKFTVKQRIASFFYKGVLYGSVGFGCGLIGQGIAN-LIMNTKRCIKKS 332
           PSS +FE       FTV  R  +  YKG+++ SVG   GL+G  I+N LIM  K+     
Sbjct: 241 PSSHMFEQG----SFTVMNRFGTLVYKGMVFASVGLAAGLVGTAISNGLIMLRKKMDPSF 300

Query: 333 DEDVPVPPLVQSAVLWGVFLAVSSNTRYQIVNALEQVVEFSPLAKKIPPVAMAFTVGV-R 392
           +     PP V +++ W   + VS+N RYQ +N +E +     LAK +PP+    +V V R
Sbjct: 301 ETPNKPPPTVLNSLTWATHMGVSANARYQTLNGIEFL-----LAKVLPPLVFKTSVIVLR 322

Query: 393 FANNIYGGMQFVDWARWSGVQ 411
            ANN+ GGM FV  AR +G Q
Sbjct: 361 CANNVAGGMSFVLLARMTGSQ 322

[Close]

BLAST of CmoCh02G013970.1 vs. ExPASy Swiss-Prot
Match: Q9C9Z3 (Protein RETICULATA-RELATED 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RER2 PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.3e-19
Identity = 94/322 (29.19%), Postives = 141/322 (43.79%), Query Frame = 0


Query: 92  GGDGGFGGDGNGFGGSGGGGDGNGDGEEEREFGRILKFDDVIKEADARGVRLPEDMLEAA 151
           GG GG  G+  G  GSGGGG G G  EEE                              +
Sbjct: 62  GGGGGSIGNHGGGSGSGGGGGGYGGSEEEE-----------------------------S 121

Query: 152 KATGIREVFLQRYLDLQGSGWLLGFLMNSCSMFRDRMLADPSFLFKVGTEVVIDSCCATF 211
              G   +F+Q        GW            R R+ AD  F FKV  E+++       
Sbjct: 122 SPWGPLGLFIQ--------GW------------RSRVAADSQFPFKVLMEMLVGVSANVL 181

Query: 212 AEVQKRGENFWAEFELFAADLLVGVVVDIALVGMLAPYARIGQRPVSRGLLGQMQRAYSS 271
            ++  R      E +   + L+VG +++  L+ +LAP A      +S G    +   + S
Sbjct: 182 GDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLLAPSA------ISHGSSNLLPGIFRS 241

Query: 272 LPSS-VFEAERPGCKFTVKQRIASFFYKGVLYGSVGFGCGLIGQGIAN-LIMNTKRCIKK 331
            PSS +FE       FT+  R  +  YKG+++ +VG   GL+G  I+N LIM  K+    
Sbjct: 242 CPSSHMFEQG----NFTLMNRFGTLVYKGMVFATVGLAAGLVGTAISNGLIMLRKKIDPS 301

Query: 332 SDEDVPVPPLVQSAVLWGVFLAVSSNTRYQIVNALEQVVEFSPLAKKIPPVAMAFTV-GV 391
            +     PP + +++ W   + VS+N RYQ +N  E ++E     K +PP+    +V  +
Sbjct: 302 FETPNKPPPTLLNSLTWATHMGVSANVRYQTLNGAEFLLE-----KSLPPLVFKTSVIAL 319

Query: 392 RFANNIYGGMQFVDWARWSGVQ 411
           R  NN+ GGM FV  AR +G Q
Sbjct: 362 RVVNNVLGGMSFVTLARMTGSQ 319

[Close]

BLAST of CmoCh02G013970.1 vs. ExPASy TrEMBL
Match: A0A6J1H219 (protein RETICULATA-RELATED 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111459653 PE=3 SV=1)

HSP 1 Score: 807.0 bits (2083), Expect = 3.7e-230
Identity = 410/410 (100.00%), Postives = 410/410 (100.00%), Query Frame = 0


Query: 1   MSLTSPCFNLIHSAVTSTPDAFPSKLEVRASGCFTWPCSESRSSFKVVSLHYSSNVSCRI 60
           MSLTSPCFNLIHSAVTSTPDAFPSKLEVRASGCFTWPCSESRSSFKVVSLHYSSNVSCRI
Sbjct: 1   MSLTSPCFNLIHSAVTSTPDAFPSKLEVRASGCFTWPCSESRSSFKVVSLHYSSNVSCRI 60

Query: 61  PLQCFSSEAAAETIAAANDSKVFDTDFESRIGGDGGFGGDGNGFGGSGGGGDGNGDGEEE 120
           PLQCFSSEAAAETIAAANDSKVFDTDFESRIGGDGGFGGDGNGFGGSGGGGDGNGDGEEE
Sbjct: 61  PLQCFSSEAAAETIAAANDSKVFDTDFESRIGGDGGFGGDGNGFGGSGGGGDGNGDGEEE 120

Query: 121 REFGRILKFDDVIKEADARGVRLPEDMLEAAKATGIREVFLQRYLDLQGSGWLLGFLMNS 180
           REFGRILKFDDVIKEADARGVRLPEDMLEAAKATGIREVFLQRYLDLQGSGWLLGFLMNS
Sbjct: 121 REFGRILKFDDVIKEADARGVRLPEDMLEAAKATGIREVFLQRYLDLQGSGWLLGFLMNS 180

Query: 181 CSMFRDRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGENFWAEFELFAADLLVGVVVDI 240
           CSMFRDRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGENFWAEFELFAADLLVGVVVDI
Sbjct: 181 CSMFRDRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGENFWAEFELFAADLLVGVVVDI 240

Query: 241 ALVGMLAPYARIGQRPVSRGLLGQMQRAYSSLPSSVFEAERPGCKFTVKQRIASFFYKGV 300
           ALVGMLAPYARIGQRPVSRGLLGQMQRAYSSLPSSVFEAERPGCKFTVKQRIASFFYKGV
Sbjct: 241 ALVGMLAPYARIGQRPVSRGLLGQMQRAYSSLPSSVFEAERPGCKFTVKQRIASFFYKGV 300

Query: 301 LYGSVGFGCGLIGQGIANLIMNTKRCIKKSDEDVPVPPLVQSAVLWGVFLAVSSNTRYQI 360
           LYGSVGFGCGLIGQGIANLIMNTKRCIKKSDEDVPVPPLVQSAVLWGVFLAVSSNTRYQI
Sbjct: 301 LYGSVGFGCGLIGQGIANLIMNTKRCIKKSDEDVPVPPLVQSAVLWGVFLAVSSNTRYQI 360

Query: 361 VNALEQVVEFSPLAKKIPPVAMAFTVGVRFANNIYGGMQFVDWARWSGVQ 411
           VNALEQVVEFSPLAKKIPPVAMAFTVGVRFANNIYGGMQFVDWARWSGVQ
Sbjct: 361 VNALEQVVEFSPLAKKIPPVAMAFTVGVRFANNIYGGMQFVDWARWSGVQ 410

[Close]

BLAST of CmoCh02G013970.1 vs. ExPASy TrEMBL
Match: A0A6J1K5M0 (protein RETICULATA-RELATED 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111491373 PE=3 SV=1)

HSP 1 Score: 791.6 bits (2043), Expect = 1.6e-225
Identity = 403/413 (97.58%), Postives = 408/413 (98.79%), Query Frame = 0


Query: 1   MSLTSPCFNLIHSAVTSTPDAFPSKLEVRASGCFTWPCSESRSSFKVVSLHYSSNVSCRI 60
           MS+TSPCFNLIHSAV S+PDAFPSKLEVRASGCFTWPCSESRSSFKVVSLHYSSNVSCRI
Sbjct: 1   MSVTSPCFNLIHSAVASSPDAFPSKLEVRASGCFTWPCSESRSSFKVVSLHYSSNVSCRI 60

Query: 61  PLQCFSSEAAAETIAAANDSKVFDTDFESRIGGDGGFGGDGNGFGGS---GGGGDGNGDG 120
           PL+CFSSEAAAETIAAA DSKVFDTDFESRIGGDGGFGGDGNGFGG+   GGGGDGNGDG
Sbjct: 61  PLKCFSSEAAAETIAAAKDSKVFDTDFESRIGGDGGFGGDGNGFGGNGGGGGGGDGNGDG 120

Query: 121 EEEREFGRILKFDDVIKEADARGVRLPEDMLEAAKATGIREVFLQRYLDLQGSGWLLGFL 180
           EEEREFGRILKFDDVIKEADARGVRLPEDMLEAAKATGIREVFLQRYLDLQGSGWLLGFL
Sbjct: 121 EEEREFGRILKFDDVIKEADARGVRLPEDMLEAAKATGIREVFLQRYLDLQGSGWLLGFL 180

Query: 181 MNSCSMFRDRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGENFWAEFELFAADLLVGVV 240
           MNSCSMFRDRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGENFWAEFELFAADLLVGVV
Sbjct: 181 MNSCSMFRDRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGENFWAEFELFAADLLVGVV 240

Query: 241 VDIALVGMLAPYARIGQRPVSRGLLGQMQRAYSSLPSSVFEAERPGCKFTVKQRIASFFY 300
           VDIALVGMLAPYARIGQRPVSRGLLGQMQRAYSSLPSSVFEAERPGCKFTVKQRIASFFY
Sbjct: 241 VDIALVGMLAPYARIGQRPVSRGLLGQMQRAYSSLPSSVFEAERPGCKFTVKQRIASFFY 300

Query: 301 KGVLYGSVGFGCGLIGQGIANLIMNTKRCIKKSDEDVPVPPLVQSAVLWGVFLAVSSNTR 360
           KGVLYGSVGFGCGLIGQGIANLIMNTKRCIKKSDEDVPVPPL+QSAVLWGVFLAVSSNTR
Sbjct: 301 KGVLYGSVGFGCGLIGQGIANLIMNTKRCIKKSDEDVPVPPLIQSAVLWGVFLAVSSNTR 360

Query: 361 YQIVNALEQVVEFSPLAKKIPPVAMAFTVGVRFANNIYGGMQFVDWARWSGVQ 411
           YQIVNALEQVVEFSPLAKKIPPVAMAFTVGVRFANNIYGGMQFVDWARWSGVQ
Sbjct: 361 YQIVNALEQVVEFSPLAKKIPPVAMAFTVGVRFANNIYGGMQFVDWARWSGVQ 413

[Close]

BLAST of CmoCh02G013970.1 vs. ExPASy TrEMBL
Match: A0A6J1CHA0 (protein RETICULATA-RELATED 1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111011177 PE=3 SV=1)

HSP 1 Score: 698.4 bits (1801), Expect = 1.8e-197
Identity = 360/419 (85.92%), Postives = 377/419 (89.98%), Query Frame = 0


Query: 1   MSLTSPCFNLIHSAVTSTPDAFPSKLEVRASGCFTWPCSESRSSFKVVSLHYSSNVSCRI 60
           MS+ S  FNL HSAV S PD FPS LEVRASGCF WPCSES  SFK+V+L +SS ++CR+
Sbjct: 1   MSVASSSFNLFHSAVPSNPDVFPSILEVRASGCFRWPCSESTGSFKLVALRHSSKLNCRV 60

Query: 61  PLQCFSSEAAAETIAAAND--------SKVFDTDFESRIGGDGGFGGDGNGFGGSGGG-G 120
            L C SSE+AAETIAA+ D        SK FD + E RIGGDGG GG GN FGG GGG G
Sbjct: 61  RLHCVSSESAAETIAASEDGRTGSAENSKSFDVNSEPRIGGDGGIGGGGNSFGGGGGGDG 120

Query: 121 DGNGDGEEEREFGRILKFDDVIKEADARGVRLPEDMLEAAKATGIREVFLQRYLDLQGSG 180
           +GNGD E+EREFG ILKFDDVIKEADARGVRLP DMLEAAKATGIREVFL RYLDLQGSG
Sbjct: 121 NGNGDSEDEREFGPILKFDDVIKEADARGVRLPPDMLEAAKATGIREVFLLRYLDLQGSG 180

Query: 181 WLLGFLMNSCSMFRDRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGENFWAEFELFAAD 240
           WLLGFLMNSCSMFRDRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGENFWAEFELFAAD
Sbjct: 181 WLLGFLMNSCSMFRDRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGENFWAEFELFAAD 240

Query: 241 LLVGVVVDIALVGMLAPYARIGQRPVSRGLLGQMQRAYSSLPSSVFEAERPGCKFTVKQR 300
           LLVGVVVD+ALVGMLAPYARIGQRPVSRGLLGQMQ AYSSLPSSVFEAERPGC+FTVKQR
Sbjct: 241 LLVGVVVDVALVGMLAPYARIGQRPVSRGLLGQMQNAYSSLPSSVFEAERPGCRFTVKQR 300

Query: 301 IASFFYKGVLYGSVGFGCGLIGQGIANLIMNTKRCIKKSDEDVPVPPLVQSAVLWGVFLA 360
           IAS+FYKGVLYGSVGFGCGLIGQGIANLIMN KRCIKKSDEDVPVPPL+QSA LWGVFLA
Sbjct: 301 IASYFYKGVLYGSVGFGCGLIGQGIANLIMNAKRCIKKSDEDVPVPPLIQSAALWGVFLA 360

Query: 361 VSSNTRYQIVNALEQVVEFSPLAKKIPPVAMAFTVGVRFANNIYGGMQFVDWARWSGVQ 411
           VSSNTRYQIVNALEQVVE SPLAKKIPPVAMAFT+GVRFANNIYGGMQFVDWARWSGVQ
Sbjct: 361 VSSNTRYQIVNALEQVVEASPLAKKIPPVAMAFTIGVRFANNIYGGMQFVDWARWSGVQ 419

[Close]

BLAST of CmoCh02G013970.1 vs. ExPASy TrEMBL
Match: A0A5D3BCI2 (Protein RETICULATA-RELATED 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold26G00110 PE=3 SV=1)

HSP 1 Score: 694.5 bits (1791), Expect = 2.7e-196
Identity = 361/414 (87.20%), Postives = 376/414 (90.82%), Query Frame = 0


Query: 1   MSLTSPCFNLIHSAVTSTPDAFPSKLEVRASGCFTWPCSESRSSFKVV-SLHYSSNVSCR 60
           MS+ S  FNL HS V+S PDAF S L+VRASGCF WPCSE + SFK+V SLH+SSNV+ R
Sbjct: 1   MSVASSSFNLFHSTVSSNPDAFLSNLDVRASGCFRWPCSEPKGSFKLVSSLHHSSNVNFR 60

Query: 61  IPLQCFSSE-AAAETIAAANDSKVFD-TDFESRIGGDGGFGGDGNGFGGS-GGGGDGNGD 120
           I L C SSE AAAETI A  DSKVFD  D E RI GDGG GG GN FGGS GGGGDGNGD
Sbjct: 61  IRLNCISSEAAAAETIVAPGDSKVFDGVDSEPRIDGDGGVGGGGNAFGGSGGGGGDGNGD 120

Query: 121 GEEEREFGRILKFDDVIKEADARGVRLPEDMLEAAKATGIREVFLQRYLDLQGSGWLLGF 180
           GE+EREFG +LKFDDVIKEADARGVRLP DMLEAAKATGIREVFL RYLDLQGSGWLLGF
Sbjct: 121 GEDEREFGPLLKFDDVIKEADARGVRLPTDMLEAAKATGIREVFLHRYLDLQGSGWLLGF 180

Query: 181 LMNSCSMFRDRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGENFWAEFELFAADLLVGV 240
           LMNSCSMFRDRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGENFWAEFELFAADLLVG+
Sbjct: 181 LMNSCSMFRDRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGENFWAEFELFAADLLVGI 240

Query: 241 VVDIALVGMLAPYARIGQRPVSRGLLGQMQRAYSSLPSSVFEAERPGCKFTVKQRIASFF 300
           VVD+ALVGMLAPYARIGQRPVS GLLGQMQ AYSSLPSSVFEAERPGCKFTVKQRIAS+F
Sbjct: 241 VVDVALVGMLAPYARIGQRPVSSGLLGQMQHAYSSLPSSVFEAERPGCKFTVKQRIASYF 300

Query: 301 YKGVLYGSVGFGCGLIGQGIANLIMNTKRCIKKSDEDVPVPPLVQSAVLWGVFLAVSSNT 360
           YKGVLYGSVGFGCGL+GQGIANLIMN KRCIKKSDEDVPVPPL+QSA LWGVFLAVSSNT
Sbjct: 301 YKGVLYGSVGFGCGLVGQGIANLIMNAKRCIKKSDEDVPVPPLIQSAALWGVFLAVSSNT 360

Query: 361 RYQIVNALEQVVEFSPLAKKIPPVAMAFTVGVRFANNIYGGMQFVDWARWSGVQ 411
           RYQIVNALEQ+VE SPL KKIPPVAMAFTVGVRFANNIYGGMQFVDWARWSGVQ
Sbjct: 361 RYQIVNALEQIVEASPLGKKIPPVAMAFTVGVRFANNIYGGMQFVDWARWSGVQ 414

[Close]

BLAST of CmoCh02G013970.1 vs. ExPASy TrEMBL
Match: A0A1S3C8G1 (protein RETICULATA-RELATED 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103497984 PE=3 SV=1)

HSP 1 Score: 694.5 bits (1791), Expect = 2.7e-196
Identity = 361/414 (87.20%), Postives = 376/414 (90.82%), Query Frame = 0


Query: 1   MSLTSPCFNLIHSAVTSTPDAFPSKLEVRASGCFTWPCSESRSSFKVV-SLHYSSNVSCR 60
           MS+ S  FNL HS V+S PDAF S L+VRASGCF WPCSE + SFK+V SLH+SSNV+ R
Sbjct: 1   MSVASSSFNLFHSTVSSNPDAFLSNLDVRASGCFRWPCSEPKGSFKLVSSLHHSSNVNFR 60

Query: 61  IPLQCFSSE-AAAETIAAANDSKVFD-TDFESRIGGDGGFGGDGNGFGGS-GGGGDGNGD 120
           I L C SSE AAAETI A  DSKVFD  D E RI GDGG GG GN FGGS GGGGDGNGD
Sbjct: 61  IRLNCISSEAAAAETIVAPGDSKVFDGVDSEPRIDGDGGVGGGGNAFGGSGGGGGDGNGD 120

Query: 121 GEEEREFGRILKFDDVIKEADARGVRLPEDMLEAAKATGIREVFLQRYLDLQGSGWLLGF 180
           GE+EREFG +LKFDDVIKEADARGVRLP DMLEAAKATGIREVFL RYLDLQGSGWLLGF
Sbjct: 121 GEDEREFGPLLKFDDVIKEADARGVRLPTDMLEAAKATGIREVFLHRYLDLQGSGWLLGF 180

Query: 181 LMNSCSMFRDRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGENFWAEFELFAADLLVGV 240
           LMNSCSMFRDRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGENFWAEFELFAADLLVG+
Sbjct: 181 LMNSCSMFRDRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGENFWAEFELFAADLLVGI 240

Query: 241 VVDIALVGMLAPYARIGQRPVSRGLLGQMQRAYSSLPSSVFEAERPGCKFTVKQRIASFF 300
           VVD+ALVGMLAPYARIGQRPVS GLLGQMQ AYSSLPSSVFEAERPGCKFTVKQRIAS+F
Sbjct: 241 VVDVALVGMLAPYARIGQRPVSSGLLGQMQHAYSSLPSSVFEAERPGCKFTVKQRIASYF 300

Query: 301 YKGVLYGSVGFGCGLIGQGIANLIMNTKRCIKKSDEDVPVPPLVQSAVLWGVFLAVSSNT 360
           YKGVLYGSVGFGCGL+GQGIANLIMN KRCIKKSDEDVPVPPL+QSA LWGVFLAVSSNT
Sbjct: 301 YKGVLYGSVGFGCGLVGQGIANLIMNAKRCIKKSDEDVPVPPLIQSAALWGVFLAVSSNT 360

Query: 361 RYQIVNALEQVVEFSPLAKKIPPVAMAFTVGVRFANNIYGGMQFVDWARWSGVQ 411
           RYQIVNALEQ+VE SPL KKIPPVAMAFTVGVRFANNIYGGMQFVDWARWSGVQ
Sbjct: 361 RYQIVNALEQIVEASPLGKKIPPVAMAFTVGVRFANNIYGGMQFVDWARWSGVQ 414

[Close]

BLAST of CmoCh02G013970.1 vs. NCBI nr
Match: XP_022958431.1 (protein RETICULATA-RELATED 1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 807.0 bits (2083), Expect = 7.6e-230
Identity = 410/410 (100.00%), Postives = 410/410 (100.00%), Query Frame = 0


Query: 1   MSLTSPCFNLIHSAVTSTPDAFPSKLEVRASGCFTWPCSESRSSFKVVSLHYSSNVSCRI 60
           MSLTSPCFNLIHSAVTSTPDAFPSKLEVRASGCFTWPCSESRSSFKVVSLHYSSNVSCRI
Sbjct: 1   MSLTSPCFNLIHSAVTSTPDAFPSKLEVRASGCFTWPCSESRSSFKVVSLHYSSNVSCRI 60

Query: 61  PLQCFSSEAAAETIAAANDSKVFDTDFESRIGGDGGFGGDGNGFGGSGGGGDGNGDGEEE 120
           PLQCFSSEAAAETIAAANDSKVFDTDFESRIGGDGGFGGDGNGFGGSGGGGDGNGDGEEE
Sbjct: 61  PLQCFSSEAAAETIAAANDSKVFDTDFESRIGGDGGFGGDGNGFGGSGGGGDGNGDGEEE 120

Query: 121 REFGRILKFDDVIKEADARGVRLPEDMLEAAKATGIREVFLQRYLDLQGSGWLLGFLMNS 180
           REFGRILKFDDVIKEADARGVRLPEDMLEAAKATGIREVFLQRYLDLQGSGWLLGFLMNS
Sbjct: 121 REFGRILKFDDVIKEADARGVRLPEDMLEAAKATGIREVFLQRYLDLQGSGWLLGFLMNS 180

Query: 181 CSMFRDRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGENFWAEFELFAADLLVGVVVDI 240
           CSMFRDRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGENFWAEFELFAADLLVGVVVDI
Sbjct: 181 CSMFRDRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGENFWAEFELFAADLLVGVVVDI 240

Query: 241 ALVGMLAPYARIGQRPVSRGLLGQMQRAYSSLPSSVFEAERPGCKFTVKQRIASFFYKGV 300
           ALVGMLAPYARIGQRPVSRGLLGQMQRAYSSLPSSVFEAERPGCKFTVKQRIASFFYKGV
Sbjct: 241 ALVGMLAPYARIGQRPVSRGLLGQMQRAYSSLPSSVFEAERPGCKFTVKQRIASFFYKGV 300

Query: 301 LYGSVGFGCGLIGQGIANLIMNTKRCIKKSDEDVPVPPLVQSAVLWGVFLAVSSNTRYQI 360
           LYGSVGFGCGLIGQGIANLIMNTKRCIKKSDEDVPVPPLVQSAVLWGVFLAVSSNTRYQI
Sbjct: 301 LYGSVGFGCGLIGQGIANLIMNTKRCIKKSDEDVPVPPLVQSAVLWGVFLAVSSNTRYQI 360

Query: 361 VNALEQVVEFSPLAKKIPPVAMAFTVGVRFANNIYGGMQFVDWARWSGVQ 411
           VNALEQVVEFSPLAKKIPPVAMAFTVGVRFANNIYGGMQFVDWARWSGVQ
Sbjct: 361 VNALEQVVEFSPLAKKIPPVAMAFTVGVRFANNIYGGMQFVDWARWSGVQ 410

[Close]

BLAST of CmoCh02G013970.1 vs. NCBI nr
Match: KAG6606017.1 (Protein RETICULATA-RELATED 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035966.1 Protein RETICULATA-RELATED 1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 795.4 bits (2053), Expect = 2.3e-226
Identity = 407/413 (98.55%), Postives = 408/413 (98.79%), Query Frame = 0


Query: 1   MSLTSPCFNLIHSAVTSTPDAFPSKLEVRASGCFTWPCSESRSSFKVVSLHYSSNVSCRI 60
           MSLTSPCFNLIHSA+TSTPDAFPSKLEVRASGCFTWPCSESRSSFKVVSLHYSSNVSCRI
Sbjct: 1   MSLTSPCFNLIHSAITSTPDAFPSKLEVRASGCFTWPCSESRSSFKVVSLHYSSNVSCRI 60

Query: 61  PLQCFSSEAAAETIAAANDSKVFDTDFESRIGGDGGFGGDGNGFGGSGG---GGDGNGDG 120
           PLQCFSSEAAAETIAAA DSKVFDTDFESRIGGDGGFGGDGNGFGGSGG   GGDGNGDG
Sbjct: 61  PLQCFSSEAAAETIAAAKDSKVFDTDFESRIGGDGGFGGDGNGFGGSGGGGDGGDGNGDG 120

Query: 121 EEEREFGRILKFDDVIKEADARGVRLPEDMLEAAKATGIREVFLQRYLDLQGSGWLLGFL 180
           EEEREFGRILKFDDVIKEADARGVRLPEDMLEAAKATGIREVFLQRYLDLQGSGWLLGFL
Sbjct: 121 EEEREFGRILKFDDVIKEADARGVRLPEDMLEAAKATGIREVFLQRYLDLQGSGWLLGFL 180

Query: 181 MNSCSMFRDRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGENFWAEFELFAADLLVGVV 240
           MNSCSMFRDRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGENFWAEFELFAADLLVGVV
Sbjct: 181 MNSCSMFRDRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGENFWAEFELFAADLLVGVV 240

Query: 241 VDIALVGMLAPYARIGQRPVSRGLLGQMQRAYSSLPSSVFEAERPGCKFTVKQRIASFFY 300
           VDIALVGMLAPYARIGQRPVSRGLLGQMQRAYSSLPSSVFEAERPGCKFTVKQRIASFFY
Sbjct: 241 VDIALVGMLAPYARIGQRPVSRGLLGQMQRAYSSLPSSVFEAERPGCKFTVKQRIASFFY 300

Query: 301 KGVLYGSVGFGCGLIGQGIANLIMNTKRCIKKSDEDVPVPPLVQSAVLWGVFLAVSSNTR 360
           KGVLYGSVGFGCGLIGQGIANLIMNTKRCIKKSDEDV VPPLVQSAVLWGVFLAVSSNTR
Sbjct: 301 KGVLYGSVGFGCGLIGQGIANLIMNTKRCIKKSDEDVRVPPLVQSAVLWGVFLAVSSNTR 360

Query: 361 YQIVNALEQVVEFSPLAKKIPPVAMAFTVGVRFANNIYGGMQFVDWARWSGVQ 411
           YQIVNALEQVVEFSPLAKKIPPVAMAFTVGVRFANNIYGGMQFVDWARWSGVQ
Sbjct: 361 YQIVNALEQVVEFSPLAKKIPPVAMAFTVGVRFANNIYGGMQFVDWARWSGVQ 413

[Close]

BLAST of CmoCh02G013970.1 vs. NCBI nr
Match: XP_022996050.1 (protein RETICULATA-RELATED 1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 791.6 bits (2043), Expect = 3.3e-225
Identity = 403/413 (97.58%), Postives = 408/413 (98.79%), Query Frame = 0


Query: 1   MSLTSPCFNLIHSAVTSTPDAFPSKLEVRASGCFTWPCSESRSSFKVVSLHYSSNVSCRI 60
           MS+TSPCFNLIHSAV S+PDAFPSKLEVRASGCFTWPCSESRSSFKVVSLHYSSNVSCRI
Sbjct: 1   MSVTSPCFNLIHSAVASSPDAFPSKLEVRASGCFTWPCSESRSSFKVVSLHYSSNVSCRI 60

Query: 61  PLQCFSSEAAAETIAAANDSKVFDTDFESRIGGDGGFGGDGNGFGGS---GGGGDGNGDG 120
           PL+CFSSEAAAETIAAA DSKVFDTDFESRIGGDGGFGGDGNGFGG+   GGGGDGNGDG
Sbjct: 61  PLKCFSSEAAAETIAAAKDSKVFDTDFESRIGGDGGFGGDGNGFGGNGGGGGGGDGNGDG 120

Query: 121 EEEREFGRILKFDDVIKEADARGVRLPEDMLEAAKATGIREVFLQRYLDLQGSGWLLGFL 180
           EEEREFGRILKFDDVIKEADARGVRLPEDMLEAAKATGIREVFLQRYLDLQGSGWLLGFL
Sbjct: 121 EEEREFGRILKFDDVIKEADARGVRLPEDMLEAAKATGIREVFLQRYLDLQGSGWLLGFL 180

Query: 181 MNSCSMFRDRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGENFWAEFELFAADLLVGVV 240
           MNSCSMFRDRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGENFWAEFELFAADLLVGVV
Sbjct: 181 MNSCSMFRDRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGENFWAEFELFAADLLVGVV 240

Query: 241 VDIALVGMLAPYARIGQRPVSRGLLGQMQRAYSSLPSSVFEAERPGCKFTVKQRIASFFY 300
           VDIALVGMLAPYARIGQRPVSRGLLGQMQRAYSSLPSSVFEAERPGCKFTVKQRIASFFY
Sbjct: 241 VDIALVGMLAPYARIGQRPVSRGLLGQMQRAYSSLPSSVFEAERPGCKFTVKQRIASFFY 300

Query: 301 KGVLYGSVGFGCGLIGQGIANLIMNTKRCIKKSDEDVPVPPLVQSAVLWGVFLAVSSNTR 360
           KGVLYGSVGFGCGLIGQGIANLIMNTKRCIKKSDEDVPVPPL+QSAVLWGVFLAVSSNTR
Sbjct: 301 KGVLYGSVGFGCGLIGQGIANLIMNTKRCIKKSDEDVPVPPLIQSAVLWGVFLAVSSNTR 360

Query: 361 YQIVNALEQVVEFSPLAKKIPPVAMAFTVGVRFANNIYGGMQFVDWARWSGVQ 411
           YQIVNALEQVVEFSPLAKKIPPVAMAFTVGVRFANNIYGGMQFVDWARWSGVQ
Sbjct: 361 YQIVNALEQVVEFSPLAKKIPPVAMAFTVGVRFANNIYGGMQFVDWARWSGVQ 413

[Close]

BLAST of CmoCh02G013970.1 vs. NCBI nr
Match: XP_023534638.1 (protein RETICULATA-RELATED 1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 774.2 bits (1998), Expect = 5.4e-220
Identity = 397/412 (96.36%), Postives = 402/412 (97.57%), Query Frame = 0


Query: 1   MSLTSPCFNLIHSAVTSTPDAFPSKLEVRASGCFTWPCSESRSSFKVVSLHYSSNVSCRI 60
           MS+TSPCFNLIHSAVTSTPDAFPSKLEVRASGCFTWP SESRSSFKVV+ HYSSNVSCRI
Sbjct: 1   MSVTSPCFNLIHSAVTSTPDAFPSKLEVRASGCFTWPSSESRSSFKVVAFHYSSNVSCRI 60

Query: 61  PLQCFSSEAAAETIAAANDSKVFDTDFESRIGGDGGFGGDGNGFGGSGG--GGDGNGDGE 120
           PL+CFSSEAAA+      DSKVFDTDFESRIGGDGGFGGDGNGFGGSGG  GGDGNGDGE
Sbjct: 61  PLKCFSSEAAAK------DSKVFDTDFESRIGGDGGFGGDGNGFGGSGGGDGGDGNGDGE 120

Query: 121 EEREFGRILKFDDVIKEADARGVRLPEDMLEAAKATGIREVFLQRYLDLQGSGWLLGFLM 180
           EEREFGRILKFDDVIKEADARGVRLPEDMLEAAKATGIREVFLQRYLDLQGSGWLLGFLM
Sbjct: 121 EEREFGRILKFDDVIKEADARGVRLPEDMLEAAKATGIREVFLQRYLDLQGSGWLLGFLM 180

Query: 181 NSCSMFRDRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGENFWAEFELFAADLLVGVVV 240
           NSCSMFRDRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGENFWAEFELFAADLLVGVVV
Sbjct: 181 NSCSMFRDRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGENFWAEFELFAADLLVGVVV 240

Query: 241 DIALVGMLAPYARIGQRPVSRGLLGQMQRAYSSLPSSVFEAERPGCKFTVKQRIASFFYK 300
           DIALVGMLAPYARIGQRPVSRGLLGQMQRAYSSLPSSVFEAERPGCKFTVKQRIASFFYK
Sbjct: 241 DIALVGMLAPYARIGQRPVSRGLLGQMQRAYSSLPSSVFEAERPGCKFTVKQRIASFFYK 300

Query: 301 GVLYGSVGFGCGLIGQGIANLIMNTKRCIKKSDEDVPVPPLVQSAVLWGVFLAVSSNTRY 360
           GVLYGSVGFGCGLIGQGIANLIMNTKRCIKKSDEDVPVPPL+QSAVLWGVFLAVSSNTRY
Sbjct: 301 GVLYGSVGFGCGLIGQGIANLIMNTKRCIKKSDEDVPVPPLIQSAVLWGVFLAVSSNTRY 360

Query: 361 QIVNALEQVVEFSPLAKKIPPVAMAFTVGVRFANNIYGGMQFVDWARWSGVQ 411
           QIVNALEQVVEFSPLAKKIPPVAMAFTVGVRFANNIYGGMQFVDWARWSGVQ
Sbjct: 361 QIVNALEQVVEFSPLAKKIPPVAMAFTVGVRFANNIYGGMQFVDWARWSGVQ 406

[Close]

BLAST of CmoCh02G013970.1 vs. NCBI nr
Match: XP_038900475.1 (protein RETICULATA-RELATED 1, chloroplastic [Benincasa hispida])

HSP 1 Score: 700.7 bits (1807), Expect = 7.6e-198
Identity = 361/415 (86.99%), Postives = 375/415 (90.36%), Query Frame = 0


Query: 1   MSLTSPCFNLIHSAVTSTPDAFPSKLEVRASGCFTWPCSESRSSFKVVSLHYSSNVSCRI 60
           MS+TSP FNL HS V S PDAF S LEVRASGCF WPCSE R SFK+V+LH+SSNV+CRI
Sbjct: 1   MSVTSPTFNLFHSTVPSNPDAFFSNLEVRASGCFRWPCSEPRGSFKLVALHHSSNVNCRI 60

Query: 61  PLQCFSSEAAAETIAAANDSKVF-DTDFESRIGGDGGFGGDGNGF----GGSGGGGDGNG 120
            L C SSEAAAETI A  DSKVF D +  SRI  DGG GG GN F    GG GGGGDGNG
Sbjct: 61  RLNCISSEAAAETIVAPEDSKVFDDVNSVSRIDADGGVGGGGNPFGSGGGGGGGGGDGNG 120

Query: 121 DGEEEREFGRILKFDDVIKEADARGVRLPEDMLEAAKATGIREVFLQRYLDLQGSGWLLG 180
           DGE+EREFG +LK DDVIKEADARGVRLP DMLEAAKATGIREVFL RYLDLQGSGWLLG
Sbjct: 121 DGEDEREFGPLLKLDDVIKEADARGVRLPSDMLEAAKATGIREVFLHRYLDLQGSGWLLG 180

Query: 181 FLMNSCSMFRDRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGENFWAEFELFAADLLVG 240
           FLMNSCSMFRDRMLADPSFLFKVGTEVVIDSCCATFAEVQKRG+NFW EFELFAADLLVG
Sbjct: 181 FLMNSCSMFRDRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGDNFWPEFELFAADLLVG 240

Query: 241 VVVDIALVGMLAPYARIGQRPVSRGLLGQMQRAYSSLPSSVFEAERPGCKFTVKQRIASF 300
           +VVDIALVGMLAPYARIGQRPVSRGLLGQMQ AYS+LPSSVFEAERPGCKFTV+QRIAS+
Sbjct: 241 IVVDIALVGMLAPYARIGQRPVSRGLLGQMQHAYSALPSSVFEAERPGCKFTVRQRIASY 300

Query: 301 FYKGVLYGSVGFGCGLIGQGIANLIMNTKRCIKKSDEDVPVPPLVQSAVLWGVFLAVSSN 360
           FYKGVLYGSVGFGCGLIGQGIANLIMN KRCIKKSDEDVPVPPL+QSA LWGVFLAVSSN
Sbjct: 301 FYKGVLYGSVGFGCGLIGQGIANLIMNAKRCIKKSDEDVPVPPLIQSAALWGVFLAVSSN 360

Query: 361 TRYQIVNALEQVVEFSPLAKKIPPVAMAFTVGVRFANNIYGGMQFVDWARWSGVQ 411
           TRYQIVNALEQVVE SPL KKIPPVAMAFTVGVRFANNIYGGMQFVDWARWSGVQ
Sbjct: 361 TRYQIVNALEQVVEASPLGKKIPPVAMAFTVGVRFANNIYGGMQFVDWARWSGVQ 415

[Close]

BLAST of CmoCh02G013970.1 vs. TAIR 10
Match: AT5G22790.1 (reticulata-related 1 )

HSP 1 Score: 467.2 bits (1201), Expect = 1.3e-131
Identity = 260/412 (63.11%), Postives = 308/412 (74.76%), Query Frame = 0


Query: 25  KLEVRASGCF-TWPCSESRSSFKVVSLHYSSNVSCR-IPLQCFSSEAAAETI-------- 84
           + E+R S CF   P  ESR       +H +S++S R +  +C  S+     I        
Sbjct: 29  RFEIR-SVCFRRSPGVESR------RIHLNSDLSSRNLRNRCVGSDVVTGEISGRSIPDW 88

Query: 85  --AAANDSKVFD--TDFESRIGGDGGFGGDGNGFGGSGGGGDGNGDGE-----------E 144
             +   D  + D   + +   GGD     DG G GG+G GG G GDGE           E
Sbjct: 89  AYSGVKDETLSDLEPELDDGDGGDENGNNDGGGNGGNGDGGGGGGDGEGDDGEDEADKAE 148

Query: 145 EREFGRILKFDDVIKEADARGVRLPEDMLEAAKATGIREVFLQRYLDLQGSGWLLGFLMN 204
           E+EFG ILKF++V+KE + RG+ LPEDMLEAAK+ GIR++FL RYLDLQGS W LGFLM 
Sbjct: 149 EKEFGPILKFEEVMKETERRGITLPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLMR 208

Query: 205 SCSMFRDRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGENFWAEFELFAADLLVGVVVD 264
           SC+M R+RMLADPSFLFKVGTEV IDSCCATFAEVQKRGE+FW+EFEL+AADLLVG+VVD
Sbjct: 209 SCAMLRNRMLADPSFLFKVGTEVAIDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVVD 268

Query: 265 IALVGMLAPYARIGQRPV-SRGLLGQMQRAYSSLPSSVFEAERPGCKFTVKQRIASFFYK 324
           +ALVG+LAPYARIG+  V S GL   ++RA +SLPSSVFEAERPGCKF+V QRIA+FFYK
Sbjct: 269 VALVGLLAPYARIGKPSVASTGLFKDLKRACASLPSSVFEAERPGCKFSVNQRIATFFYK 328

Query: 325 GVLYGSVGFGCGLIGQGIANLIMNTKRCIKKSDEDVPVPPLVQSAVLWGVFLAVSSNTRY 384
           G+LYGSVGFGCGLIGQGIANLIM  KR +KKS+EDVP+PPL +SA LWGVFL +SSN RY
Sbjct: 329 GLLYGSVGFGCGLIGQGIANLIMTAKRSVKKSEEDVPIPPLFESAALWGVFLGLSSNARY 388

Query: 385 QIVNALEQVVEFSPLAKKIPPVAMAFTVGVRFANNIYGGMQFVDWARWSGVQ 411
           QI+N LE+VVE S  AK+IP VAMAFTVGVRFANN+YGGMQFVDWA+ SGVQ
Sbjct: 389 QIINGLERVVEGSTAAKRIPVVAMAFTVGVRFANNVYGGMQFVDWAKLSGVQ 433

[Close]

BLAST of CmoCh02G013970.1 vs. TAIR 10
Match: AT2G37860.3 (Protein of unknown function (DUF3411) )

HSP 1 Score: 453.8 bits (1166), Expect = 1.5e-127
Identity = 237/358 (66.20%), Postives = 280/358 (78.21%), Query Frame = 0


Query: 69  AAAETIAAANDSKVFDTDFESRIG-------------GDGGFGGDGNGFGGSGG-GGDGN 128
           AA E I    D+ +   D    +G             GDG  G DGNG GG GG GG+G+
Sbjct: 75  AATEQIKGEGDNSILGKDNVRNLGTDQLENLDIDGNVGDGFNGSDGNGGGGGGGNGGEGD 134

Query: 129 GDGE--EEREFGRILKFDDVIKEADARGVRLPEDMLEAAKATGIREVFLQRYLDLQGSGW 188
           G+GE  EE+EFG ILKF++V+KE +ARG  LP DMLEAAK  GIR+V L RYLDLQ S  
Sbjct: 135 GEGEDYEEKEFGPILKFEEVMKETEARGATLPSDMLEAAKNYGIRKVLLLRYLDLQSSAG 194

Query: 189 LLGFLMNSCSMFRDRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGENFWAEFELFAADL 248
           LLGF + S +M R+RMLADPSFLFK+G E+VIDSCCAT AEVQKRG++FWAEFEL+ ADL
Sbjct: 195 LLGFAIRSWAMLRNRMLADPSFLFKIGAEIVIDSCCATVAEVQKRGKDFWAEFELYVADL 254

Query: 249 LVGVVVDIALVGMLAPYARIGQRPVSRGLLGQMQRAYSSLPSSVFEAERPGCKFTVKQRI 308
           LVG VV+IALVGMLAPY R GQ   S G LG+M  AY++LPSSVFEAERPGC+F+ +QR+
Sbjct: 255 LVGTVVNIALVGMLAPYVRFGQPSASPGFLGRMVFAYNALPSSVFEAERPGCRFSAQQRL 314

Query: 309 ASFFYKGVLYGSVGFGCGLIGQGIANLIMNTKRCIKKSDEDVPVPPLVQSAVLWGVFLAV 368
           A++FYKG++YG+VGFGCG++GQGIANLIM  KR I KS+E++PVPPL++SA LWGVFL+V
Sbjct: 315 ATYFYKGIMYGAVGFGCGIVGQGIANLIMTAKRNINKSEENIPVPPLIKSAALWGVFLSV 374

Query: 369 SSNTRYQIVNALEQVVEFSPLAKKIPPVAMAFTVGVRFANNIYGGMQFVDWARWSGVQ 411
           SSNTRYQI+N LE+VVE SP AKK PP AMAFTVGVR ANNIYGGMQFVDWAR SG Q
Sbjct: 375 SSNTRYQIINGLERVVEASPFAKKFPPAAMAFTVGVRLANNIYGGMQFVDWARLSGCQ 432

[Close]

BLAST of CmoCh02G013970.1 vs. TAIR 10
Match: AT2G37860.2 (Protein of unknown function (DUF3411) )

HSP 1 Score: 317.0 bits (811), Expect = 2.2e-86
Identity = 171/273 (62.64%), Postives = 206/273 (75.46%), Query Frame = 0


Query: 69  AAAETIAAANDSKVFDTDFESRIG-------------GDGGFGGDGNGFGGSGG-GGDGN 128
           AA E I    D+ +   D    +G             GDG  G DGNG GG GG GG+G+
Sbjct: 75  AATEQIKGEGDNSILGKDNVRNLGTDQLENLDIDGNVGDGFNGSDGNGGGGGGGNGGEGD 134

Query: 129 GDGE--EEREFGRILKFDDVIKEADARGVRLPEDMLEAAKATGIREVFLQRYLDLQGSGW 188
           G+GE  EE+EFG ILKF++V+KE +ARG  LP DMLEAAK  GIR+V L RYLDLQ S  
Sbjct: 135 GEGEDYEEKEFGPILKFEEVMKETEARGATLPSDMLEAAKNYGIRKVLLLRYLDLQSSAG 194

Query: 189 LLGFLMNSCSMFRDRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGENFWAEFELFAADL 248
           LLGF + S +M R+RMLADPSFLFK+G E+VIDSCCAT AEVQKRG++FWAEFEL+ ADL
Sbjct: 195 LLGFAIRSWAMLRNRMLADPSFLFKIGAEIVIDSCCATVAEVQKRGKDFWAEFELYVADL 254

Query: 249 LVGVVVDIALVGMLAPYARIGQRPVSRGLLGQMQRAYSSLPSSVFEAERPGCKFTVKQRI 308
           LVG VV+IALVGMLAPY R GQ   S G LG+M  AY++LPSSVFEAERPGC+F+ +QR+
Sbjct: 255 LVGTVVNIALVGMLAPYVRFGQPSASPGFLGRMVFAYNALPSSVFEAERPGCRFSAQQRL 314

Query: 309 ASFFYKGVLYGSVGFGCGLIGQGIANLIMNTKR 326
           A++FYKG++YG+VGFGCG++GQGIANLIM  KR
Sbjct: 315 ATYFYKGIMYGAVGFGCGIVGQGIANLIMTAKR 347

[Close]

BLAST of CmoCh02G013970.1 vs. TAIR 10
Match: AT2G37860.1 (Protein of unknown function (DUF3411) )

HSP 1 Score: 317.0 bits (811), Expect = 2.2e-86
Identity = 171/273 (62.64%), Postives = 206/273 (75.46%), Query Frame = 0


Query: 69  AAAETIAAANDSKVFDTDFESRIG-------------GDGGFGGDGNGFGGSGG-GGDGN 128
           AA E I    D+ +   D    +G             GDG  G DGNG GG GG GG+G+
Sbjct: 75  AATEQIKGEGDNSILGKDNVRNLGTDQLENLDIDGNVGDGFNGSDGNGGGGGGGNGGEGD 134

Query: 129 GDGE--EEREFGRILKFDDVIKEADARGVRLPEDMLEAAKATGIREVFLQRYLDLQGSGW 188
           G+GE  EE+EFG ILKF++V+KE +ARG  LP DMLEAAK  GIR+V L RYLDLQ S  
Sbjct: 135 GEGEDYEEKEFGPILKFEEVMKETEARGATLPSDMLEAAKNYGIRKVLLLRYLDLQSSAG 194

Query: 189 LLGFLMNSCSMFRDRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGENFWAEFELFAADL 248
           LLGF + S +M R+RMLADPSFLFK+G E+VIDSCCAT AEVQKRG++FWAEFEL+ ADL
Sbjct: 195 LLGFAIRSWAMLRNRMLADPSFLFKIGAEIVIDSCCATVAEVQKRGKDFWAEFELYVADL 254

Query: 249 LVGVVVDIALVGMLAPYARIGQRPVSRGLLGQMQRAYSSLPSSVFEAERPGCKFTVKQRI 308
           LVG VV+IALVGMLAPY R GQ   S G LG+M  AY++LPSSVFEAERPGC+F+ +QR+
Sbjct: 255 LVGTVVNIALVGMLAPYVRFGQPSASPGFLGRMVFAYNALPSSVFEAERPGCRFSAQQRL 314

Query: 309 ASFFYKGVLYGSVGFGCGLIGQGIANLIMNTKR 326
           A++FYKG++YG+VGFGCG++GQGIANLIM  KR
Sbjct: 315 ATYFYKGIMYGAVGFGCGIVGQGIANLIMTAKR 347

[Close]

BLAST of CmoCh02G013970.1 vs. TAIR 10
Match: AT5G12470.1 (Protein of unknown function (DUF3411) )

HSP 1 Score: 141.4 bits (355), Expect = 1.7e-33
Identity = 104/331 (31.42%), Postives = 169/331 (51.06%), Query Frame = 0


Query: 89  SRIGGDGGFGGDGNGFGGSGGGG-----DGNGDGEEEREFGRILKFDDVIKEADARGVRL 148
           S   G+GG   +G G  G GGGG     DG+G G+E+R+  R  +   ++KE+      L
Sbjct: 61  SASSGNGGSDNNGGGLSGGGGGGDGGKNDGDGHGDEDRDRNR-NEAMLLLKESGIELESL 120

Query: 149 PEDMLEAAKATGIREVFLQRYLDLQGSG---WLLGFLMNSCSMFRDRMLADPSFLFKVGT 208
           P+D+  A +A  I    + R+L+LQ S    WL+ F       FR+R+LAD  F+ K+  
Sbjct: 121 PKDLAAAIEAGRIPGSVITRFLELQKSAVMRWLMQF-----GGFRERLLADDLFMAKLAM 180

Query: 209 EVVIDSCCATFAEVQKRGENFWAEFELFAADLLVGVVVDIALVGMLAPYARIGQRPVSRG 268
           E  +     T AE ++R ENF+ E E+  AD+ + ++ D  LV + AP   +  RP    
Sbjct: 181 ECGVGIFTKTAAEYERRRENFFNELEVVFADVAMAIIADFMLVYLPAP--TVSLRPPLAL 240

Query: 269 LLGQMQRAYSSLPSSVFEAERPGCKFTVKQRIASFFYKGVLYGSVGFGCGLIGQGIANLI 328
             G + + + + P + F+    G  +T+ QR+ +    G    +VG    L+G  I N  
Sbjct: 241 TAGGISKFFHNCPDNAFQVALSGTSYTLLQRLGAITRNGAKLFAVGTTSSLVGTAITNAF 300

Query: 329 MNTKRCIKKSDE-DVPVPPLVQSAVLWGVFLAVSSNTRYQIVNALEQVVEFSPLAKKIPP 388
           +  ++ + ++ E +V   P+V ++V +GV++AVSSN RYQIV  + +     P+  +   
Sbjct: 301 IKARKAVDQNSEGEVETVPIVSTSVAYGVYMAVSSNLRYQIVAGVIEQRLLEPMLHQHKL 360

Query: 389 VAMAFTVGVRFANNIYGGMQFVDWARWSGVQ 411
              A    VR  N   G + +VD+AR  G+Q
Sbjct: 361 ALSALCFAVRTGNTFLGSLLWVDYARLIGIQ 383

The following BLAST results are available for this feature:

BLAST of CmoCh02G013970.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FGP9	1.9e-130	63.11	Protein RETICULATA-RELATED 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=R...	[more]
B9DFK5	2.1e-126	66.20	Protein RETICULATA, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RE PE=1 SV=...	[more]
Q94CJ5	2.3e-32	31.42	Protein RETICULATA-RELATED 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=R...	[more]
Q9C9Z2	7.1e-21	31.15	Protein RETICULATA-RELATED 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=R...	[more]
Q9C9Z3	1.3e-19	29.19	Protein RETICULATA-RELATED 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=R...	[more]

BLAST of CmoCh02G013970.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H219	3.7e-230	100.00	protein RETICULATA-RELATED 1, chloroplastic-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1K5M0	1.6e-225	97.58	protein RETICULATA-RELATED 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1CHA0	1.8e-197	85.92	protein RETICULATA-RELATED 1, chloroplastic OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A5D3BCI2	2.7e-196	87.20	Protein RETICULATA-RELATED 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3C8G1	2.7e-196	87.20	protein RETICULATA-RELATED 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103497...	[more]

BLAST of CmoCh02G013970.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022958431.1	7.6e-230	100.00	protein RETICULATA-RELATED 1, chloroplastic-like [Cucurbita moschata]	[more]
KAG6606017.1	2.3e-226	98.55	Protein RETICULATA-RELATED 1, chloroplastic, partial [Cucurbita argyrosperma sub...	[more]
XP_022996050.1	3.3e-225	97.58	protein RETICULATA-RELATED 1, chloroplastic [Cucurbita maxima]	[more]
XP_023534638.1	5.4e-220	96.36	protein RETICULATA-RELATED 1, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_038900475.1	7.6e-198	86.99	protein RETICULATA-RELATED 1, chloroplastic [Benincasa hispida]	[more]

BLAST of CmoCh02G013970.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G22790.1	1.3e-131	63.11	reticulata-related 1	[more]
AT2G37860.3	1.5e-127	66.20	Protein of unknown function (DUF3411)	[more]
AT2G37860.2	2.2e-86	62.64	Protein of unknown function (DUF3411)	[more]
AT2G37860.1	2.2e-86	62.64	Protein of unknown function (DUF3411)	[more]
AT5G12470.1	1.7e-33	31.42	Protein of unknown function (DUF3411)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021825	Protein RETICULATA-related	PFAM	PF11891	RETICULATA-like	coord: 186..362 e-value: 7.8E-65 score: 217.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..118
None	No IPR available	PANTHER	PTHR31038:SF18	PROTEIN RETICULATA-RELATED 1, CHLOROPLASTIC	coord: 62..410
None	No IPR available	PANTHER	PTHR31038	EXPRESSED PROTEIN-RELATED	coord: 62..410

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh02G013970	CmoCh02G013970	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh02G013970.1:exon:8435	CmoCh02G013970.1:exon:8435	exon
CmoCh02G013970.1:exon:8434	CmoCh02G013970.1:exon:8434	exon
CmoCh02G013970.1:exon:8433	CmoCh02G013970.1:exon:8433	exon
CmoCh02G013970.1:exon:8432	CmoCh02G013970.1:exon:8432	exon
CmoCh02G013970.1:exon:8431	CmoCh02G013970.1:exon:8431	exon
CmoCh02G013970.1:exon:8430	CmoCh02G013970.1:exon:8430	exon
CmoCh02G013970.1:exon:8429	CmoCh02G013970.1:exon:8429	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh02G013970.1:three_prime_utr	CmoCh02G013970.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh02G013970.1:cds	CmoCh02G013970.1:cds_7	CDS
CmoCh02G013970.1:cds	CmoCh02G013970.1:cds_6	CDS
CmoCh02G013970.1:cds	CmoCh02G013970.1:cds_5	CDS
CmoCh02G013970.1:cds	CmoCh02G013970.1:cds_4	CDS
CmoCh02G013970.1:cds	CmoCh02G013970.1:cds_3	CDS
CmoCh02G013970.1:cds	CmoCh02G013970.1:cds_2	CDS
CmoCh02G013970.1:cds	CmoCh02G013970.1:cds	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh02G013970.1:five_prime_utr	CmoCh02G013970.1:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh02G013970.1	CmoCh02G013970.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0099402	plant organ development
cellular_component	GO:0031969	chloroplast membrane
cellular_component	GO:0016021	integral component of membrane