CmoCh02G012370.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G012370.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr02: 7438653 .. 7440049 (+)
Sequence length	1011
RNA-Seq Expression	CmoCh02G012370.1
Synteny	CmoCh02G012370.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTTGTCAAAAGATTTATATAATGAGTTCTTGAATTGCTGATTGCAAAGGCAAGCATTTTCGAAATCGGTCGACCCTTGAAATGAGAAGAGATGGGGCAATTGCAGCACCCAAAAGCCGTCGGACATTAAATTTTGTGGCTGGTTTGCACGTTGAAAAGCAATCTGAGGAGGCCAACCATTTCTTGAGGCGAAGATTCATGCTTCATTTCTTCGGAGAATCTGCGCTGAATATGGGAAGAACTTCTATTTGGGAACTCTGCTGATGACGAAGGAGCGGCAGAGAGCAATATATGGAATTATGAAGATAACCCATCTCAGAGAAGCCATGAAAACGTGGATTTTTGGACATTTCAAAATCAAAATATGCAGAAAAGTGTTGACTTTTTTGTTTTCTTATTGGTGCAGTTTGGTGCAGGAGAACAGATGAACTTGTGAAAGTCCCCAAGTGCTTGATGGGTGCAAAGAATGTTTGCAAGACATCTTTGAAGGGTGTCCCTAGGACGTGCTGGAAGCTGCTTTTAAGTCACACAACGTCCAAATTTCGATTCAAAATGAGAAAAGAATCGGACAGCAGTAGGAGCCCTAAAGAGGAAAGGGGCAGGAGAACTCAGTCCTTTAAAGCGGTTTGGAATAACTTTCTAAACACTTGCGAACACATTTTTTCACATAATTACACATTTTTAAGTACTCAACAAAGTCATCCTTATCTTTTGATTGAGGATATGATAGTTTTGAAGAACTGTATTGGTACTGTTACCATGTAGCTGGAACTGCGAGGCTAATGAGTGTGCCAGTTATGGTAATTGCATCTGATTCTTTGCTTCCTACTAAGACTATTTACAGTGCTGCTCTCCACTTGGGACCTGATTGTTCGTTGGTTGAAGATAAACAAGCTGTTTGTATGTTACATAGGGAAGAATAATAAAGGCAAAGAAAAAAAATCTAAAAGCCAAGGGAAGGAAAGCGCACAGTAACAACAGAAGAAATGATAGGAAAGAATAATAAAGGCACTCTTTGAAGGAAGGAAATTAAACTGATGGTCCATCTGTAAACCCCCAAAAAAGAAAACTAAAACAAGCATCCTACAAAATAGTTAACAGAAAGGCAGAGAGAGAGCCCAGCCCGCGAACCAGAGGAAAAGAAAATTGCATGAAAAAATTACTAAAAAACAAAAGAGATGCAATACATTGTTCTCTGGAGATGTTACACATGCAGTTAATGAGTCGCCAGCCCTATAGCTTTCTCTTCAGCAAAACCTTGAGATTTTCAAAGATGCACTCCTCCCTCCTGAAGCAACCTGCCGGAATTTACATGCTTTTGCGCCCCCCAAACCACCACCTCACCATAGGGAAACTGAAATTCTCCAATGCAAAAACAGCCAAACCATATATTTGA

mRNA sequence

GTTTTGTCAAAAGATTTATATAATGAGTTCTTGAATTGCTGATTGCAAAGGCAAGCATTTTCGAAATCGGTCGACCCTTGAAATGAGAAGAGATGGGGCAATTGCAGCACCCAAAAGCCGTCGGACATTAAATTTTGTGGCTGGTTTGCACGTTGAAAAGCAATCTGAGGAGGCCAACCATTTCTTGAGGCGAAGATTCATGCTTCATTTCTTCGGAGAATCTGCGCTGAATATGGGAAGAACTTCTATTTGGGAACTCTGCTGATGACGAAGGAGCGGCAGAGAGCAATATATGGAATTATGAAGATAACCCATCTCAGAGAAGCCATGAAAACGAGAACAGATGAACTTGTGAAAGTCCCCAAGTGCTTGATGGGTGCAAAGAATGTTTGCAAGACATCTTTGAAGGGTGTCCCTAGGACGTGCTGGAAGCTGCTTTTAAGTCACACAACGTCCAAATTTCGATTCAAAATGAGAAAAGAATCGGACAGCAGTAGGAGCCCTAAAGAGGAAAGGGGCAGGAGAACTCAGTCCTTTAAAGCGGTTTGGAATAACTTTCTAAACACTTGCGAACACATTTTTTCACATAATTACACATTTTTAAGTACTCAACAAAGTCATCCTTATCTTTTGATTGAGGATATGATAGTTTTGAAGAACTGTATTGGTACTGTTACCATAAAACTAAAACAAGCATCCTACAAAATAGTTAACAGAAAGGCAGAGAGAGAGCCCAGCCCGCGAACCAGAGGAAAAGAAAATTGCATGAAAAAATTACTAAAAAACAAAAGAGATGCAATACATTGTTCTCTGGAGATGTTACACATGCAGTTAATGAGTCGCCAGCCCTATAGCTTTCTCTTCAGCAAAACCTTGAGATTTTCAAAGATGCACTCCTCCCTCCTGAAGCAACCTGCCGGAATTTACATGCTTTTGCGCCCCCCAAACCACCACCTCACCATAGGGAAACTGAAATTCTCCAATGCAAAAACAGCCAAACCATATATTTGA

Coding sequence (CDS)

ATGACGAAGGAGCGGCAGAGAGCAATATATGGAATTATGAAGATAACCCATCTCAGAGAAGCCATGAAAACGAGAACAGATGAACTTGTGAAAGTCCCCAAGTGCTTGATGGGTGCAAAGAATGTTTGCAAGACATCTTTGAAGGGTGTCCCTAGGACGTGCTGGAAGCTGCTTTTAAGTCACACAACGTCCAAATTTCGATTCAAAATGAGAAAAGAATCGGACAGCAGTAGGAGCCCTAAAGAGGAAAGGGGCAGGAGAACTCAGTCCTTTAAAGCGGTTTGGAATAACTTTCTAAACACTTGCGAACACATTTTTTCACATAATTACACATTTTTAAGTACTCAACAAAGTCATCCTTATCTTTTGATTGAGGATATGATAGTTTTGAAGAACTGTATTGGTACTGTTACCATAAAACTAAAACAAGCATCCTACAAAATAGTTAACAGAAAGGCAGAGAGAGAGCCCAGCCCGCGAACCAGAGGAAAAGAAAATTGCATGAAAAAATTACTAAAAAACAAAAGAGATGCAATACATTGTTCTCTGGAGATGTTACACATGCAGTTAATGAGTCGCCAGCCCTATAGCTTTCTCTTCAGCAAAACCTTGAGATTTTCAAAGATGCACTCCTCCCTCCTGAAGCAACCTGCCGGAATTTACATGCTTTTGCGCCCCCCAAACCACCACCTCACCATAGGGAAACTGAAATTCTCCAATGCAAAAACAGCCAAACCATATATTTGA

Protein sequence

MTKERQRAIYGIMKITHLREAMKTRTDELVKVPKCLMGAKNVCKTSLKGVPRTCWKLLLSHTTSKFRFKMRKESDSSRSPKEERGRRTQSFKAVWNNFLNTCEHIFSHNYTFLSTQQSHPYLLIEDMIVLKNCIGTVTIKLKQASYKIVNRKAEREPSPRTRGKENCMKKLLKNKRDAIHCSLEMLHMQLMSRQPYSFLFSKTLRFSKMHSSLLKQPAGIYMLLRPPNHHLTIGKLKFSNAKTAKPYI

Homology

The following BLAST results are available for this feature:

BLAST of CmoCh02G012370.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh02G012370.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh02G012370.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh02G012370.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..88

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh02G012370	CmoCh02G012370	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh02G012370.1:exon:6417	CmoCh02G012370.1:exon:6417	exon
CmoCh02G012370.1:exon:6418	CmoCh02G012370.1:exon:6418	exon
CmoCh02G012370.1:exon:6419	CmoCh02G012370.1:exon:6419	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh02G012370.1:five_prime_utr	CmoCh02G012370.1:five_prime_utr	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh02G012370.1:cds	CmoCh02G012370.1:cds	CDS
CmoCh02G012370.1:cds	CmoCh02G012370.1:cds_2	CDS
CmoCh02G012370.1:cds	CmoCh02G012370.1:cds_3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh02G012370.1	CmoCh02G012370.1-protein	polypeptide