Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. ATGCCCCGGTCGGTTTCGAGTCAGTCATCTCGACGACAAGACTTGAGAGAATTTATAGTAACAGCAATACATTCTGAAAGTTGCAGTGGATATGTTGTGGATACAATGTTTGGCTTGACAGGTTCGATTTTCTCTTCGTTGTGTTTGCATTCCCAATTTTCGTGATGGCTTTAGGAGGCCGGGTTGGTGTGAATAATTTGTTTTGGCGCAGCAGCAGTTTTGAGCACGTTATGGTTTCAAGTCATTGTTGCTCTGCCTGTACAAATAGGTAGAGAGGGATATAAGGTTGTAAAATTTGGTATGTTGGGACCTTAGTTCTTTAAGTTTCATTATAATTATTATAGTTGAATAGAATAGTATCATATTATTAAATAGCTTCCTAATCAGAGTCCCCACAATATTAAATTACACATTCTGTTTATGGTAATGCTTATTTAGTAGTTCATCATGTGTTTGGGACTCTTGATTGTCTGCCATTTCTGCTTGTGATGACGTTTTTTTCTCTTTTGTTACTTTAGGCCTGCTGGTTGGGATTTTTTACATTTCATCCTCCAAACGTCATCTTCTTCCAACACAGTACTCTTGTGAATCCAATCAGACATCATCATCATCCTCCACCTGTTCCAAAGTGTTAGATGTCATCTCTGTAGGGGCCCCATCCCCCTCGCATGATCCCTTGTCAAATACTAGTCAAATTGTCATCATGAGGAGGGCTTGTTTCGCATTTGGATGACCTTACATGTTCAAACAAAATGTTAGTATTGCTCATGATCAATAATTTTAATTTGACTTTGGGATCTTATCCTAATTCATGCATCAAACACTTCTTCTTTATCTGCTGCTTTCCA mRNA sequence ATGCCCCGGTCGGTTTCGAGTCAGTCATCTCGACGACAAGACTTGAGAGAATTTATAGTAACAGCAATACATTCTGAAAGTTGCAGTGGATATGTTGTGGATACAATGTTTGGCTTGACAGGAGGCCGGGTTGGTGTGAATAATTTGTTTTGGCGCAGCAGCAGTTTTGAGCACGTTATGGCCTGCTGGTTGGGATTTTTTACATTTCATCCTCCAAACGTCATCTTCTTCCAACACAGTACTCTTGTGAATCCAATCAGACATCATCATCATCCTCCACCTGTTCCAAAGTGTTAGATGTCATCTCTGTAGGGGCCCCATCCCCCTCGCATGATCCCTTGTCAAATACTAGTCAAATTGTCATCATGAGGAGGGCTTGTTTCGCATTTGGATGACCTTACATGTTCAAACAAAATGTTAGTATTGCTCATGATCAATAATTTTAATTTGACTTTGGGATCTTATCCTAATTCATGCATCAAACACTTCTTCTTTATCTGCTGCTTTCCA Coding sequence (CDS) ATGCCCCGGTCGGTTTCGAGTCAGTCATCTCGACGACAAGACTTGAGAGAATTTATAGTAACAGCAATACATTCTGAAAGTTGCAGTGGATATGTTGTGGATACAATGTTTGGCTTGACAGGAGGCCGGGTTGGTGTGAATAATTTGTTTTGGCGCAGCAGCAGTTTTGAGCACGTTATGGCCTGCTGGTTGGGATTTTTTACATTTCATCCTCCAAACGTCATCTTCTTCCAACACAGTACTCTTGTGAATCCAATCAGACATCATCATCATCCTCCACCTGTTCCAAAGTGTTAG Protein sequence MPRSVSSQSSRRQDLREFIVTAIHSESCSGYVVDTMFGLTGGRVGVNNLFWRSSSFEHVMACWLGFFTFHPPNVIFFQHSTLVNPIRHHHHPPPVPKC
Homology
BLAST of CmoCh02G010540.1 vs. NCBI nr
Match: KAG6605700.1 (E3 ubiquitin-protein ligase XBAT33, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 55.8 bits (133), Expect = 2.4e-04 Identity = 29/41 (70.73%), Postives = 33/41 (80.49%), Query Frame = 0 Query: 20 VTAIHSESCSGYVVDTMFGLTGGRVGVNNLFWRSSSFEHVM 61 VTAIHSESCSGYVVDTMFGLTG VG+ F+ SSS H++ Sbjct: 500 VTAIHSESCSGYVVDTMFGLTGLLVGI---FYISSSKRHLL 537
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAG6605700.1 | 2.4e-04 | 70.73 | E3 ubiquitin-protein ligase XBAT33, partial [Cucurbita argyrosperma subsp. soror... | [more] |
Match Name | E-value | Identity | Description | |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
CmoCh02G010540.1:exon:5828 | CmoCh02G010540.1:exon:5828 | exon |
CmoCh02G010540.1:exon:5827 | CmoCh02G010540.1:exon:5827 | exon |
CmoCh02G010540.1:exon:5826 | CmoCh02G010540.1:exon:5826 | exon |
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
CmoCh02G010540.1:three_prime_utr | CmoCh02G010540.1:three_prime_utr | three_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
CmoCh02G010540.1:cds | CmoCh02G010540.1:cds_3 | CDS |
CmoCh02G010540.1:cds | CmoCh02G010540.1:cds_2 | CDS |
CmoCh02G010540.1:cds | CmoCh02G010540.1:cds | CDS |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Type |
CmoCh02G010540.1 | CmoCh02G010540.1-protein | polypeptide |
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