CmoCh02G008280.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G008280.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Histone H2B
Location	Cmo_Chr02: 5044868 .. 5045311 (-)
Sequence length	444
RNA-Seq Expression	CmoCh02G008280.1
Synteny	CmoCh02G008280.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCCAAAAGCCGAGAAGAAACCCGCCGAGAAGAAGCCGGTGGAGGAGAAGAAGGCCGTAGCCGAGAAAGCCCCAGCGGAGAAGAAGCCAAAGGCTGGGAAGAAGCTGCCGAAGGAAGGCGCTGCGGCTGCCGGAGACAAGAAGAAGAAGAGGTCGAAGAAAAGTATTGAGACATACAAGATCTACATCTTCAAGGTGCTGAAGCAAGTTCATCCAGACATCGGAATCTCCAGCAAGGCCATGGGAATCATGAACAGCTTCATCAACGACATTTTCGAGAAACTCGCTCAGGAGTCTTCTAAGTTGGCTCGCTACAACAAGAAGCCGACCATCACTTCCAGGGAGATTCAGACGGCTGTGAGGCTCGTTCTTCCTGGTGAATTGGCCAAGCACGCCGTTTCTGAAGGTACCAAGGCGGTTACGAAATTCACTAGTTCCTAA

mRNA sequence

ATGGCGCCAAAAGCCGAGAAGAAACCCGCCGAGAAGAAGCCGGTGGAGGAGAAGAAGGCCGTAGCCGAGAAAGCCCCAGCGGAGAAGAAGCCAAAGGCTGGGAAGAAGCTGCCGAAGGAAGGCGCTGCGGCTGCCGGAGACAAGAAGAAGAAGAGGTCGAAGAAAAGTATTGAGACATACAAGATCTACATCTTCAAGGTGCTGAAGCAAGTTCATCCAGACATCGGAATCTCCAGCAAGGCCATGGGAATCATGAACAGCTTCATCAACGACATTTTCGAGAAACTCGCTCAGGAGTCTTCTAAGTTGGCTCGCTACAACAAGAAGCCGACCATCACTTCCAGGGAGATTCAGACGGCTGTGAGGCTCGTTCTTCCTGGTGAATTGGCCAAGCACGCCGTTTCTGAAGGTACCAAGGCGGTTACGAAATTCACTAGTTCCTAA

Coding sequence (CDS)

ATGGCGCCAAAAGCCGAGAAGAAACCCGCCGAGAAGAAGCCGGTGGAGGAGAAGAAGGCCGTAGCCGAGAAAGCCCCAGCGGAGAAGAAGCCAAAGGCTGGGAAGAAGCTGCCGAAGGAAGGCGCTGCGGCTGCCGGAGACAAGAAGAAGAAGAGGTCGAAGAAAAGTATTGAGACATACAAGATCTACATCTTCAAGGTGCTGAAGCAAGTTCATCCAGACATCGGAATCTCCAGCAAGGCCATGGGAATCATGAACAGCTTCATCAACGACATTTTCGAGAAACTCGCTCAGGAGTCTTCTAAGTTGGCTCGCTACAACAAGAAGCCGACCATCACTTCCAGGGAGATTCAGACGGCTGTGAGGCTCGTTCTTCCTGGTGAATTGGCCAAGCACGCCGTTTCTGAAGGTACCAAGGCGGTTACGAAATTCACTAGTTCCTAA

Protein sequence

MAPKAEKKPAEKKPVEEKKAVAEKAPAEKKPKAGKKLPKEGAAAAGDKKKKRSKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS

Homology

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BLAST of CmoCh02G008280.1 vs. ExPASy Swiss-Prot
Match: O22582 (Histone H2B OS=Gossypium hirsutum OX=3635 GN=HIS2B PE=2 SV=3)

HSP 1 Score: 254.6 bits (649), Expect = 6.8e-67
Identity = 141/147 (95.92%), Postives = 144/147 (97.96%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPVEEKKAVAEKAPAEKKPKAGKKLPKEGAAAAGDKKKKRSKKSIETY 60
           MAPKAEKKPAEKKP EEKKAVAEKAPAEKKPKAGKKLPKEG AAAGDKKKKR KKS+ETY
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRVKKSVETY 60

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTA
Sbjct: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTA 120

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 148
           VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of CmoCh02G008280.1 vs. ExPASy Swiss-Prot
Match: Q1S9I9 (Probable histone H2B.1 OS=Medicago truncatula OX=3880 PE=3 SV=3)

HSP 1 Score: 248.1 bits (632), Expect = 6.4e-65
Identity = 139/148 (93.92%), Postives = 144/148 (97.30%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPVEEKKA-VAEKAPAEKKPKAGKKLPKEGAAAAGDKKKKRSKKSIET 60
           MAPK EKKPAEKKP EEKK+ VAEKAPAEKKPKAGKKLPKEG +AAG+KKKKRSKKS+ET
Sbjct: 1   MAPKGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGEKKKKRSKKSVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148
           AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148

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BLAST of CmoCh02G008280.1 vs. ExPASy Swiss-Prot
Match: Q1SWQ1 (Probable histone H2B.2 OS=Medicago truncatula OX=3880 PE=3 SV=3)

HSP 1 Score: 244.2 bits (622), Expect = 9.2e-64
Identity = 137/148 (92.57%), Postives = 142/148 (95.95%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPVEEKKA-VAEKAPAEKKPKAGKKLPKEGAAAAGDKKKKRSKKSIET 60
           MAPK EKKPAEKKP EEKK+ VAEKAPAEKKPKAGKKLPKEG +AAG+KKKKRSKKS+ET
Sbjct: 1   MAPKGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGEKKKKRSKKSVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKL QESS+LARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLTQESSRLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148
           AVRLVLPGELAKH VSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHDVSEGTKAVTKFTSS 148

[Close]

BLAST of CmoCh02G008280.1 vs. ExPASy Swiss-Prot
Match: Q9LZT0 (Histone H2B.7 OS=Arabidopsis thaliana OX=3702 GN=At3g46030 PE=1 SV=3)

HSP 1 Score: 237.3 bits (604), Expect = 1.1e-61
Identity = 137/147 (93.20%), Postives = 139/147 (94.56%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPVEEKKAVAEKAPAEKKPKAGKKLPKEGAAAAGDKKKKRSKKSIETY 60
           MAPKAEKKPAEKKPVEE K+ AEKAPAEKKPKAGKKLPKE A A GDKKKK  KKS+ETY
Sbjct: 1   MAPKAEKKPAEKKPVEE-KSKAEKAPAEKKPKAGKKLPKE-AGAGGDKKKKMKKKSVETY 60

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSREIQTA
Sbjct: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTA 120

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 148
           VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 145

[Close]

BLAST of CmoCh02G008280.1 vs. ExPASy Swiss-Prot
Match: P40283 (Histone H2B.11 OS=Arabidopsis thaliana OX=3702 GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 235.0 bits (598), Expect = 5.6e-61
Identity = 136/151 (90.07%), Postives = 139/151 (92.05%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPVEEK----KAVAEKAPAEKKPKAGKKLPKEGAAAAGDKKKKRSKKS 60
           MAPKAEKKPAEKKP  EK    K+ AEKAPAEKKPKAGKKLPKE A A GDKKKK  KKS
Sbjct: 1   MAPKAEKKPAEKKPASEKPVEEKSKAEKAPAEKKPKAGKKLPKE-AGAGGDKKKKMKKKS 60

Query: 61  IETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSRE 120
           +ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSRE
Sbjct: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE 120

Query: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
           IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

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BLAST of CmoCh02G008280.1 vs. ExPASy TrEMBL
Match: A0A6J1G6L8 (Histone H2B OS=Cucurbita moschata OX=3662 GN=LOC111451349 PE=3 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 6.0e-66
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPVEEKKAVAEKAPAEKKPKAGKKLPKEGAAAAGDKKKKRSKKSIETY 60
           MAPKAEKKPAEKKPVEEKKAVAEKAPAEKKPKAGKKLPKEGAAAAGDKKKKRSKKSIETY
Sbjct: 1   MAPKAEKKPAEKKPVEEKKAVAEKAPAEKKPKAGKKLPKEGAAAAGDKKKKRSKKSIETY 60

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA
Sbjct: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFT 146
           VRLVLPGELAKHAVSEGTKAVTKFT
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFT 145

[Close]

BLAST of CmoCh02G008280.1 vs. ExPASy TrEMBL
Match: A0A2J6JL31 (Histone H2B OS=Lactuca sativa OX=4236 GN=LSAT_9X22461 PE=3 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.1e-64
Identity = 142/147 (96.60%), Postives = 144/147 (97.96%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPVEEKKAVAEKAPAEKKPKAGKKLPKEGAAAAGDKKKKRSKKSIETY 60
           MAPKAEKKPAEKKP EEKKAVAEKAPAEKKPKAGKKLPKE  AAAGDKKKKRSKKS+ETY
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAVAEKAPAEKKPKAGKKLPKEAGAAAGDKKKKRSKKSVETY 60

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTA
Sbjct: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTA 120

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 148
           VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of CmoCh02G008280.1 vs. ExPASy TrEMBL
Match: A0A5D2D631 (Histone H2B OS=Gossypium darwinii OX=34276 GN=ES288_A03G052900v1 PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.5e-64
Identity = 141/147 (95.92%), Postives = 144/147 (97.96%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPVEEKKAVAEKAPAEKKPKAGKKLPKEGAAAAGDKKKKRSKKSIETY 60
           MAPKAEKKPAEKKP EEKKAVAEKAPAEKKPKAGKKLPKEG AAAGDKKKKR KKS+ETY
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRVKKSVETY 60

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTA
Sbjct: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTA 120

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 148
           VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of CmoCh02G008280.1 vs. ExPASy TrEMBL
Match: A0A5J5S5H1 (Histone H2B OS=Gossypium barbadense OX=3634 GN=ES319_A03G047700v1 PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.5e-64
Identity = 141/147 (95.92%), Postives = 144/147 (97.96%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPVEEKKAVAEKAPAEKKPKAGKKLPKEGAAAAGDKKKKRSKKSIETY 60
           MAPKAEKKPAEKKP EEKKAVAEKAPAEKKPKAGKKLPKEG AAAGDKKKKR KKS+ETY
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRVKKSVETY 60

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTA
Sbjct: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTA 120

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 148
           VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of CmoCh02G008280.1 vs. ExPASy TrEMBL
Match: A0A5D2VNC6 (Histone H2B OS=Gossypium mustelinum OX=34275 GN=E1A91_A03G052900v1 PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.5e-64
Identity = 141/147 (95.92%), Postives = 144/147 (97.96%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPVEEKKAVAEKAPAEKKPKAGKKLPKEGAAAAGDKKKKRSKKSIETY 60
           MAPKAEKKPAEKKP EEKKAVAEKAPAEKKPKAGKKLPKEG AAAGDKKKKR KKS+ETY
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRVKKSVETY 60

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTA
Sbjct: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTA 120

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 148
           VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of CmoCh02G008280.1 vs. NCBI nr
Match: XP_022947501.1 (histone H2B isoform X2 [Cucurbita moschata])

HSP 1 Score: 260.0 bits (663), Expect = 1.2e-65
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPVEEKKAVAEKAPAEKKPKAGKKLPKEGAAAAGDKKKKRSKKSIETY 60
           MAPKAEKKPAEKKPVEEKKAVAEKAPAEKKPKAGKKLPKEGAAAAGDKKKKRSKKSIETY
Sbjct: 1   MAPKAEKKPAEKKPVEEKKAVAEKAPAEKKPKAGKKLPKEGAAAAGDKKKKRSKKSIETY 60

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA
Sbjct: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFT 146
           VRLVLPGELAKHAVSEGTKAVTKFT
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFT 145

[Close]

BLAST of CmoCh02G008280.1 vs. NCBI nr
Match: XP_023533056.1 (histone H1-II-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 258.5 bits (659), Expect = 3.6e-65
Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPVEEKKAVAEKAPAEKKPKAGKKLPKEGAAAAGDKKKKRSKKSIETY 60
           MAPKAEKKPAEKKPVEEKKAVAEK PAEKKPKAGKKLPKEGAAAAGDKKKKRSKKSIETY
Sbjct: 1   MAPKAEKKPAEKKPVEEKKAVAEKVPAEKKPKAGKKLPKEGAAAAGDKKKKRSKKSIETY 60

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA
Sbjct: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFT 146
           VRLVLPGELAKHAVSEGTKAVTKFT
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFT 145

[Close]

BLAST of CmoCh02G008280.1 vs. NCBI nr
Match: XP_023747354.1 (histone H2B [Lactuca sativa] >PLY63524.1 hypothetical protein LSAT_9X22461 [Lactuca sativa])

HSP 1 Score: 255.8 bits (652), Expect = 2.3e-64
Identity = 142/147 (96.60%), Postives = 144/147 (97.96%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPVEEKKAVAEKAPAEKKPKAGKKLPKEGAAAAGDKKKKRSKKSIETY 60
           MAPKAEKKPAEKKP EEKKAVAEKAPAEKKPKAGKKLPKE  AAAGDKKKKRSKKS+ETY
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAVAEKAPAEKKPKAGKKLPKEAGAAAGDKKKKRSKKSVETY 60

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTA
Sbjct: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTA 120

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 148
           VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of CmoCh02G008280.1 vs. NCBI nr
Match: XP_012471398.1 (PREDICTED: histone H2B [Gossypium raimondii] >XP_016740575.2 histone H2B-like [Gossypium hirsutum] >XP_016755988.2 histone H2B [Gossypium hirsutum] >XP_017616583.1 PREDICTED: histone H2B [Gossypium arboreum] >O22582.3 RecName: Full=Histone H2B [Gossypium hirsutum] >KAB2038527.1 hypothetical protein ES319_D03G151500v1 [Gossypium barbadense] >KAG8496327.1 hypothetical protein CXB51_007475 [Gossypium anomalum] >MBA0552679.1 hypothetical protein [Gossypium lobatum] >MBA0609392.1 hypothetical protein [Gossypium davidsonii] >MBA0644419.1 hypothetical protein [Gossypium klotzschianum] >MBA0678673.1 hypothetical protein [Gossypium aridum] >MBA0707980.1 hypothetical protein [Gossypium laxum] >MBA0735702.1 hypothetical protein [Gossypium gossypioides] >MBA0761887.1 hypothetical protein [Gossypium trilobum] >MBA0794766.1 hypothetical protein [Gossypium harknessii] >MBA0825265.1 hypothetical protein [Gossypium armourianum] >MBA0851128.1 hypothetical protein [Gossypium schwendimanii] >TYG77039.1 hypothetical protein ES288_D03G163200v1 [Gossypium darwinii] >TYH80849.1 hypothetical protein ES332_D03G160500v1 [Gossypium tomentosum] >TYI90775.1 hypothetical protein E1A91_D03G145700v1 [Gossypium mustelinum])

HSP 1 Score: 254.6 bits (649), Expect = 5.2e-64
Identity = 141/147 (95.92%), Postives = 144/147 (97.96%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPVEEKKAVAEKAPAEKKPKAGKKLPKEGAAAAGDKKKKRSKKSIETY 60
           MAPKAEKKPAEKKP EEKKAVAEKAPAEKKPKAGKKLPKEG AAAGDKKKKR KKS+ETY
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRVKKSVETY 60

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTA
Sbjct: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTA 120

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 148
           VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of CmoCh02G008280.1 vs. NCBI nr
Match: MBA0574626.1 (hypothetical protein [Gossypium lobatum] >MBA0700220.1 hypothetical protein [Gossypium aridum] >MBA0728808.1 hypothetical protein [Gossypium laxum] >MBA0817249.1 hypothetical protein [Gossypium harknessii] >MBA0873276.1 hypothetical protein [Gossypium schwendimanii])

HSP 1 Score: 254.6 bits (649), Expect = 5.2e-64
Identity = 141/147 (95.92%), Postives = 144/147 (97.96%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPVEEKKAVAEKAPAEKKPKAGKKLPKEGAAAAGDKKKKRSKKSIETY 60
           MAPKAEKKPAEKKP EEKK VAEKAPAEKKPKAGKKLPKEG AAAGDKKKKR+KKSIETY
Sbjct: 1   MAPKAEKKPAEKKPAEEKKTVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSIETY 60

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTA
Sbjct: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTA 120

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 148
           VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of CmoCh02G008280.1 vs. TAIR 10
Match: AT3G46030.1 (Histone superfamily protein )

HSP 1 Score: 237.3 bits (604), Expect = 8.0e-63
Identity = 137/147 (93.20%), Postives = 139/147 (94.56%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPVEEKKAVAEKAPAEKKPKAGKKLPKEGAAAAGDKKKKRSKKSIETY 60
           MAPKAEKKPAEKKPVEE K+ AEKAPAEKKPKAGKKLPKE A A GDKKKK  KKS+ETY
Sbjct: 1   MAPKAEKKPAEKKPVEE-KSKAEKAPAEKKPKAGKKLPKE-AGAGGDKKKKMKKKSVETY 60

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSREIQTA
Sbjct: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTA 120

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 148
           VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 145

[Close]

BLAST of CmoCh02G008280.1 vs. TAIR 10
Match: AT5G59910.1 (Histone superfamily protein )

HSP 1 Score: 235.0 bits (598), Expect = 4.0e-62
Identity = 136/151 (90.07%), Postives = 139/151 (92.05%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPVEEK----KAVAEKAPAEKKPKAGKKLPKEGAAAAGDKKKKRSKKS 60
           MAPKAEKKPAEKKP  EK    K+ AEKAPAEKKPKAGKKLPKE A A GDKKKK  KKS
Sbjct: 1   MAPKAEKKPAEKKPASEKPVEEKSKAEKAPAEKKPKAGKKLPKE-AGAGGDKKKKMKKKS 60

Query: 61  IETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSRE 120
           +ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSRE
Sbjct: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE 120

Query: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
           IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of CmoCh02G008280.1 vs. TAIR 10
Match: AT3G45980.1 (Histone superfamily protein )

HSP 1 Score: 232.6 bits (592), Expect = 2.0e-61
Identity = 135/151 (89.40%), Postives = 138/151 (91.39%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPVEEK----KAVAEKAPAEKKPKAGKKLPKEGAAAAGDKKKKRSKKS 60
           MAP+AEKKPAEKKP  EK    K+ AEKAPAEKKPKAGKKLPKE A A GDKKKK  KKS
Sbjct: 1   MAPRAEKKPAEKKPAAEKPVEEKSKAEKAPAEKKPKAGKKLPKE-AGAGGDKKKKMKKKS 60

Query: 61  IETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSRE 120
           +ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSRE
Sbjct: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSRE 120

Query: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
           IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of CmoCh02G008280.1 vs. TAIR 10
Match: AT1G07790.1 (Histone superfamily protein )

HSP 1 Score: 229.6 bits (584), Expect = 1.7e-60
Identity = 136/152 (89.47%), Postives = 140/152 (92.11%), Query Frame = 0


Query: 1   MAPKAEKKPAEKK-----PVEEKKAVAEKAPAEKKPKAGKKLPKEGAAAAGDKKKKRSKK 60
           MAP+AEKKPAEKK     PVEE KA AEKAPAEKKPKAGKKLP +    AGDKKKKRSKK
Sbjct: 1   MAPRAEKKPAEKKTAAERPVEENKA-AEKAPAEKKPKAGKKLPPK---EAGDKKKKRSKK 60

Query: 61  SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           ++ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR
Sbjct: 61  NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of CmoCh02G008280.1 vs. TAIR 10
Match: AT2G28720.1 (Histone superfamily protein )

HSP 1 Score: 228.8 bits (582), Expect = 2.8e-60
Identity = 132/151 (87.42%), Postives = 136/151 (90.07%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPVE----EKKAVAEKAPAEKKPKAGKKLPKEGAAAAGDKKKKRSKKS 60
           MAPKA KKPAEKKP E    E++ VAEKAPAEKKPKAGKKLPKE      +KKKKR KKS
Sbjct: 1   MAPKAGKKPAEKKPAEKAPAEEEKVAEKAPAEKKPKAGKKLPKEAVTGGVEKKKKRVKKS 60

Query: 61  IETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSRE 120
            ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSRE
Sbjct: 61  TETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE 120

Query: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
           IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151

The following BLAST results are available for this feature:

BLAST of CmoCh02G008280.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22582	6.8e-67	95.92	Histone H2B OS=Gossypium hirsutum OX=3635 GN=HIS2B PE=2 SV=3	[more]
Q1S9I9	6.4e-65	93.92	Probable histone H2B.1 OS=Medicago truncatula OX=3880 PE=3 SV=3	[more]
Q1SWQ1	9.2e-64	92.57	Probable histone H2B.2 OS=Medicago truncatula OX=3880 PE=3 SV=3	[more]
Q9LZT0	1.1e-61	93.20	Histone H2B.7 OS=Arabidopsis thaliana OX=3702 GN=At3g46030 PE=1 SV=3	[more]
P40283	5.6e-61	90.07	Histone H2B.11 OS=Arabidopsis thaliana OX=3702 GN=At5g59910 PE=1 SV=5	[more]

BLAST of CmoCh02G008280.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G6L8	6.0e-66	100.00	Histone H2B OS=Cucurbita moschata OX=3662 GN=LOC111451349 PE=3 SV=1	[more]
A0A2J6JL31	1.1e-64	96.60	Histone H2B OS=Lactuca sativa OX=4236 GN=LSAT_9X22461 PE=3 SV=1	[more]
A0A5D2D631	2.5e-64	95.92	Histone H2B OS=Gossypium darwinii OX=34276 GN=ES288_A03G052900v1 PE=3 SV=1	[more]
A0A5J5S5H1	2.5e-64	95.92	Histone H2B OS=Gossypium barbadense OX=3634 GN=ES319_A03G047700v1 PE=3 SV=1	[more]
A0A5D2VNC6	2.5e-64	95.92	Histone H2B OS=Gossypium mustelinum OX=34275 GN=E1A91_A03G052900v1 PE=3 SV=1	[more]

BLAST of CmoCh02G008280.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947501.1	1.2e-65	100.00	histone H2B isoform X2 [Cucurbita moschata]	[more]
XP_023533056.1	3.6e-65	99.31	histone H1-II-like [Cucurbita pepo subsp. pepo]	[more]
XP_023747354.1	2.3e-64	96.60	histone H2B [Lactuca sativa] >PLY63524.1 hypothetical protein LSAT_9X22461 [Lact...	[more]
XP_012471398.1	5.2e-64	95.92	PREDICTED: histone H2B [Gossypium raimondii] >XP_016740575.2 histone H2B-like [G...	[more]
MBA0574626.1	5.2e-64	95.92	hypothetical protein [Gossypium lobatum] >MBA0700220.1 hypothetical protein [Gos...	[more]

BLAST of CmoCh02G008280.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46030.1	8.0e-63	93.20	Histone superfamily protein	[more]
AT5G59910.1	4.0e-62	90.07	Histone superfamily protein	[more]
AT3G45980.1	2.0e-61	89.40	Histone superfamily protein	[more]
AT1G07790.1	1.7e-60	89.47	Histone superfamily protein	[more]
AT2G28720.1	2.8e-60	87.42	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 60..78 score: 80.55 coord: 131..144 score: 92.65 coord: 118..131 score: 92.45 coord: 101..118 score: 76.51 coord: 79..99 score: 75.74
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 50..146 e-value: 6.3E-73 score: 258.3
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 5..147
IPR000558	Histone H2B	PROSITE	PS00357	HISTONE_H2B	coord: 115..137
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 3..123 e-value: 1.3E-23 score: 83.8
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 1..147 e-value: 7.1E-58 score: 196.1
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 31..147
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..55
None	No IPR available	PANTHER	PTHR23428:SF282	HISTONE H2B	coord: 5..147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh02G008280	CmoCh02G008280	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh02G008280.1:exon:146	CmoCh02G008280.1:exon:146	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh02G008280.1:cds	CmoCh02G008280.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh02G008280.1	CmoCh02G008280.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity