CmoCh01G016170.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh01G016170.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr01: 12327887 .. 12329736 (-)
Sequence length180
RNA-Seq ExpressionCmoCh01G016170.1
SyntenyCmoCh01G016170.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGCTTATGCCCCCCGAGCTGGCAACATTATTTTTCGTTTCGTACCCATCTTTTAATTTCTTTTCAATAATTCCTGCCACTGACACCGTAGTAAAATCGCGTAAAAAAATGATGGGTTGAGACTTTAGAATGATCCTCAACCGTAGATCATAGGCCGTACAGAGCACTCCGATCCGACGGCTGATATCGCAGAAACCGCCATTTCTTTGTTCTTGCTGCTGCTGAACGTCACCATTTTAGTCTTCAGTTGAGCTTCTAAGAAAAGAATCTCTCTGTATCTGTATATTTAACACACTCAAGATCTCCTCATCTTTTCCATCTTTGATCATCTTCCCTTTCTTTCTTTCACCGCCATTCTTGCTCGAAAGTGAAGGTGAAGAAAGCGTCTTCAGAACGTTGATCTTCATCACTCGGTCTTTTGTCCATAATTTTTCCAGAAGAAGGTGGAGACGTGGTAGATTTGAAGTTCGGTGCTGCGATTCTAGCAGGTTCAGTTTCTAAAAGCTTTCCGACTTTTATGAAGTTTTTTGGTGTCTTTTTGATGAGTTCTGTTTTCTTTTTGTTTTCTTGAAGTAGCCAACTATAAGTGATCCGAATGTTTTTTTTTTTTTGGCGTCTATATCAATTATGGCAATTTCCTTTTGTTTGGTTTGTTCATTAGACCTTTTCCACTCTTCCGTTTCGGTTGATTGAGATGCATTGTAGCCCGATTGCCTTTAGAACAGGAACATTTTCTAGATAGGAATCGAGCAATTCGGTCCGGGAAAATCCATTGAGATCCACAATCCATGAGGATGGATTTTAACTTACGTCCTTCAGATTCTTCTGCTCTGTTCTTTTAATGGCCTTTCCTTCAGAAATATTACTTGAAGAACAGGCATTCGGTTCCTTTTGTGCACTACTGTTTGAGGGCATTTCCATAGTTTGTGTCTTGGATATTCAAGTGGCGGTCCCTTTCTAGTTGTTCTAAATGAATTTGGGATTTCTTCCAATGATTTGTAGTTTTTTGATTGGGTATCTTCTTTCGAGTATTATCCAATATCCATTTTGTATTGTTATATACAATGTTTTGGTGAAGTCAGCTGATTGTTCTTCCTTACTCAATAATTCCAAATGCCTGCAGTTCTAGATTGTGACAGAAGTACAGTTGGACCTGTTAAAATGTTGGTTTTCCCAGGTTCAATTAATCATGATCATATATGGATTTAGCCTGGTTTTGGACCTTACTACTTTATCCTGTGCATCTTATTTATGTTTGTTTAACATCAAAAAAGTTCAACTCACAATCATGAAAATGTCGCTCTAGGTCGAGTCGATATGATTGAAGGGAAAAAAAGGGTATAGAAGGAAGACGAAGAAAAGCTTATTTCAAACTGCATGACAGAGTGATACATCAGGTAATCACTACTTTCTTCCCATCGAGTCAGAGAGTATGAACATGATTGAACGGAAGGGTTCTGATATGTGAATGTCTTAATGGGTGCAGATCTGGTTAAGTGAAAAAGTAAAGGCGCTTCCTGCACTCAAGGATATAACTTAGCAAAATTTCAAGTTGAGATAATCAGTTGTTTAGCTTTTTGCTGAAGAGATTTGAGGTAATCTTCATGTTCTCCACAAAATTTTTGGGAGTAATTTGTGGTTTTCATGGGTTGCTCCTCATTTATCTGTCTACATTTGGTAGTCTTACTGCACTCTGTTTTTATTATCTCTGTATTATGCTATCCAAATTTTCTTGTTTTGTTCTTTCTTTCTTATCCTTTTACCTTTTTGCTTTAGTTTAATTGTTACACTGATATCTCATATGTTCCTTAATTGGTGCAGATTCTAGCTTTGTAGACTGCAAATAG

mRNA sequence

ATGACGCTTATGCCCCCCGAGCTGGCAACATTATTTTTCGTTTCGTACCCATCTTTTAATTTCTTTTCAATAATTCCTGCCACTGACACCGTAGTAAAATCGCAAGAAGGTGGAGACGTGGTAGATTTGAAGTTCGGTGCTGCGATTCTAGCAGATTCTAGCTTTGTAGACTGCAAATAG

Coding sequence (CDS)

ATGACGCTTATGCCCCCCGAGCTGGCAACATTATTTTTCGTTTCGTACCCATCTTTTAATTTCTTTTCAATAATTCCTGCCACTGACACCGTAGTAAAATCGCAAGAAGGTGGAGACGTGGTAGATTTGAAGTTCGGTGCTGCGATTCTAGCAGATTCTAGCTTTGTAGACTGCAAATAG

Protein sequence

MTLMPPELATLFFVSYPSFNFFSIIPATDTVVKSQEGGDVVDLKFGAAILADSSFVDCK
Homology
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BLAST of CmoCh01G016170.1 vs. NCBI nr
Match: KAG6608206.1 (hypothetical protein SDJN03_01548, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102.1 bits (253), Expect = 1.7e-18
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 1  MTLMPPELATLFFVSYPSFNFFSIIPATDTVVKSQEGGDVVDLKFGAAILA 52
          MTLMPPELATLFFVSYPSFNFFSIIPATDTVVKSQEGGDVVDLKFGAAILA
Sbjct: 1  MTLMPPELATLFFVSYPSFNFFSIIPATDTVVKSQEGGDVVDLKFGAAILA 51

The following BLAST results are available for this feature:
BLAST of CmoCh01G016170.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh01G016170.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh01G016170.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6608206.11.7e-18100.00hypothetical protein SDJN03_01548, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmoCh01G016170.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh01G016170CmoCh01G016170gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh01G016170.1:exon:2568CmoCh01G016170.1:exon:2568exon
CmoCh01G016170.1:exon:2567CmoCh01G016170.1:exon:2567exon
CmoCh01G016170.1:exon:2566CmoCh01G016170.1:exon:2566exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh01G016170.1:cdsCmoCh01G016170.1:cds_3CDS
CmoCh01G016170.1:cdsCmoCh01G016170.1:cds_2CDS
CmoCh01G016170.1:cdsCmoCh01G016170.1:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh01G016170.1CmoCh01G016170.1-proteinpolypeptide