CmoCh01G013080.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G013080.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Ubiquitin domain-containing protein
Location	Cmo_Chr01: 10372501 .. 10377542 (-)
Sequence length	688
RNA-Seq Expression	CmoCh01G013080.1
Synteny	CmoCh01G013080.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCTCTGTTTTCTGTAAGGTTTGACAGCTTCTAACTTCCTTTGAGAAGGGTATTAGGGACATTTTGAAGAATGGTTTATGAAGAAACTTTGAAGATTGAGCTTTAATGGCTTCTTTTTAGCTTTACCGCGTCGTTTTCTCGTTTACTCGGTTTTTTTTATACTCCCGAGAATTAATGGTTGATGCTAAATTTGGTCTCTATAGTTTGAGAAAATTAGAATTTAGTGTTCGATGGTTTAAAAATTAGAATTTCATCATCATGTTCGATATAGCTCGGGTAATAGTTTTGGTTTCATCAAACTACCGGAACTAATTTTAACCTTTAAAATTACATGGTTGTAATTTAATTTATTTTTTTACAAATATGTTAACTATTTTTTAAAAAAATCAATATTCCTTTTTATAATTAAATGAAGAATCATAATTAATCCAATTTTTTTTTTGCAGTCCACTTGTGGACTGGTGATAAGGTAACCCTAATCCTCAGTCGAACGAATCCTTTTGATGAAGCAAGAACCCTTGAAACAAAGAAATTAACATCTCCTTACACAAAATTCAGATCAACCCAGAGATGAGGCTACACTTGAAACAAAGAAATTAACACTTTCTTACACAAAATTCGGATCAACCCATTAACACCTCCTCACACAAAATTTGGATCAACCCACGGATGAGGCTAGAATTAGATTACCTCTTACAATGAAAGATCCAAAACCCAGAGATGAGGGTAGAATTAGATTACCTCTTACAATAAAAAATCTAGAAGCAAGATTTGGAACCTTGTTCAAAATTGTAATCGAACTTGATCAAGACTTGATTCAATGACTCGGATGTAATCGATCAAAAATCTAGAAGCAATATTTGGAACTTTGTTCTAAATTGCTCACTCCACAATCGAACTTGATCAAAATTTATTTAATGGCTCAGATGTAATTCTACCACAAGAATTTGTTGAAACTTCAAATTGATGCTCGGAAGAAACGTCTTAATTTGAGATCTCAATTTCATTCATCCACGAATCTCCTTTTTTACGTAACAATTTTTGGGTATTTATAGTCTCCCGACAAGAGACATTTGTGGCCGACATTTAATTCCAATCCCCTCAGTCTCCACACAAAGTAAATTTGACCATTACATGAAATTAAAAATAATATTTTTCAACAAATGTTATGTGTGGCTAAAGAGATAAACTTGAAATCAATTGTCATATCTTGCATACCTTTATAATATGGTTTTATTAGTCATCCGTTAATAATATTCTAAAAAGTCAATTTTAATAATTATAAATATCAAAATAAATAAAAATAAATAGACATAGAATATCAAAAAGATATACAATTTTTTTTCCTAATATAAATTATTTGATAAATATAATAATTAATTTTTAAAATTTAAAAAGTATTTATTGGATTCTTTTGTTTTCATAGATCTCAAATTTAACTAAATTTTAATTTTTTATTTATTTTTTATTTCGTAACCTAAGTTCTGTTTGTTTATTTTTTTACTTTTCTAAAAAAAATATAATTTCCATTAGTTTTTTGTTAAATAAATTTTAAAAATATGAAAATTATTGTTATTATTCAATTAATACAAATTTATTTATTTATTTAAAAAATACCAATTTGAAGAAACAAACCACCGAAATTAGATATGTTAAGGACAAAAATGGAAGGAATGAAAGTAACCAAAATGTTGTAACAAAATTATTATTATTAAAAAAAAAGGCGCTGTAAACTCAGCTTCGGCTTTTGACTTTTTTGGACTCTCAGCGAAGCTTCTTCGCTCTCTTCCCAAATCTCCCATTCCCTCTTCCATCTCTTCTCATCCTTCCTTCTTTCTTTCTTCTTGTAATTTTGCGCTCTTTAATGGGTTGTGCCGGATCGTCGCAGGCCAAAGGCGACGGTGAGATTGTCCTATTACTTGCCGTTTCATATTCTGATTCTTTTCTGAGATTCTTCTTCTGGGAATTGAACGATTTCATCTTCTTTCTGATGCTTAATATTGGGATTTTATTGTTTTCGATTCTTCGATGAATTTGGCTTGATCCTACTTTGATGAAAGTGGTTAATCGTGTTGGGTTTGTTGTGTGCGGAATGTGTGATGAGAATTTGTGGATTTGAATCGGATTTGTTGTCGAGCGAATTGATTGTTGGCATTTTGGTATTTGTGATTCACTGATGGGATTTTAAGCTTAGAACTGATGATTGGTTTTGTTCTTAGTGTAATTTACGTTTTTATTGCGCTTTTCGTTTTAGGACAACTGGTTTGGAGGTTCTTAAGCATGCAATTGTTGGTATTGAAGAGATGAGATTGATTAGTTTCTTGTTTTGTTGTAGTACTTGATTTGATTGCTAAAGCTTTTAATTGGGGCTGCTAATTTAGGGAGGTTAATTGTTTGCATCTCATACACCCCTGCTGTTAGATGCTAATTCGGCTGAACCCCTTGTGTTATCGTGTTTCAAAAGCCGATATGATACTATTGTGCCTCATGTAATCGAGTTTCAAAGGCCAATATGATACTGTTGTGCCTTGTGTAGTCGAGTTTCAAAAGCCAATATGATACTATTGTGGCTGTGTATCGAGTTTCAGAGGCTGATATGATACTATTGTGCCTCGTGTAATCAAGTTTCAAAAGCCAATATGATACTGTTGTGCCTCATGCAATCGAGTTTCATAAGCCAATATGATACTGTTGTGCCTCATGTAATCGAGTTTCAAAAGCCGATATGATACTATTGTGCTTCGTGTAATCGAGTTTCATAAGCCAATATGATACTATTGTGCCTCGTGTAATCGAGTTTCAAAACCCGATAAGATACTATTGTTCAATGAGATGATGGAAATGTTTGGAGAAATTCTCATGGTAACGAGGAATTTAATGTTAATAATCTTAGCAAGACAAGCAAGCACGGTGGCTTACTGTGTTGTAATGTCGATGTGATTAGTTCTATCATTGATCATACCGTTAATCCACGCACTTCAACTTCTTTTCTGCAATCATAGTTCATCAGCTGCTAATATCTAGAGTTATAAGGAACTTATGCCATCCTTTTTAGTCACTTGAAGATTTTTTGTGATTCAGGGCCTGTGAAAAAAATTCGGAAGCCTAAAGCTTGGAAGCATCCCCAGCCAATAACAAAGACAGATCTTGCGCGGATGCGTGATGAATTTTGGGATACTGCTCCTCATTATGGTGGCACAAAAGGTATTGCTGTAATCTTGAACTTTTTTTTGGGTCTTGCACAATATTTCTGGTTACAGGTGTTATTAAATTCAAGCTAATTCATTGATTTGGATATCATATTTGATGACCACAACTGAGATTATTATTACTGAAAGAAGTTCTTAATGCTCATGCAAATATATGATTTAAGGTAATGTGTCAAGAATTCATTGCATAGTTAGTCATGACTAATGAGAAGTAATCTTCTATATTTAGCATGTCAGAACGGTGAGATCCCACGTCGGTTAGGGAGGAGAACAAAACATTCTTTATAAGGGTGTAGAAACTTCTCTCTATCATACGTTTTTTAAAATCCCGAAGGAAAAGTCCAAAGAGGACAATATCTACCAGCGGTGGGCTTGGGCTATTACAATAACCGTAAAGGAAATTGATTTTGTATTATGGATCTCTAAAGGTGATCTCTATTTAAGACTATGCTATTGAGTATCTTCCATCACCTCATTTGTTAGAACATGCGTTAGAACATTCGTTCGTTAGTGATGATTAAATCTGTCAAAAATACTTACTAGTTAGGTGTATTAGTTAGTGAGTTCTTACGTATCTCCGTTTTGAAATGTAGACAGAATCGTGCACCTCTAGATAGATTAGAATATGTTTAGCAGAGTGTACATCGTGAATGGAGTATAACTATCCAATGTATGCCTATCTTCTTTCGTGTATGGATGTCTTCTTTGGACTTCCCCTCAAGGTTTTTAAAACGCGACTACTAGGGAGAGGTTTCCTTATCCTTATAAGGAATGTTTCATTCCCCTCTCCAATTAACGTGGGATCTCGCAATCCACCCCCTTTGGGGGACGTTGGCACACCACCAGTTTCTAGCTCTGATATTGTCCTCTTTGGGCTTTTCCTTTCGAGCTTCCCTTCAAGGTTTTAAAAATGCGTATGCTAGGGAGAGGTTTTCTCATGCTTCGTTCTCCTCCCCAACCGATGTGGTATCTCACAAATTCAGCAGAATCTGAGGCTTTTAAGTTCAGTTCAGCTTCAAATTTCATTTCATACATTTTGCATATGAAGCTGCACATCTTCCTATGCAAAATTCATATGCACATATTGATGTTAAGCATGATTCAAGGTTGTGGAGTAACACATGTACAAAAGAATTCATTAGACCAAAGTTCAGCTCCATCTAATTTGCAATTTGGTTAAGAAGCTCAAGGTGTGCTGAAGCTTTAAAATGGCTGAATATCTGCATGAAAGTAGAGAGAGAAGTTTTAGTTTGATTTGATGAACAGTTGATATTAAGTTGAAGATGAAAGAAGCAAATCCTGAGTGTGTTTAATAACAATAAAAGTTTTGTGTATTTTGTGGAGAACAGAGATATGGGATGCACTACGAGCTGCTGCAGAAGCTGATCTGACACTAGCACAAGCAATAGTGGATAGTGCAGGCGTCATTGTACAAAGTGCTGATTTAACAATTTGTTACGATGAAAGAGGTATTTACATTGACACCCTCCATCCCTCTACTTCGGTTGATTCCAATTTACAAGAATAAAACTGATGCAGGTGCAAGATACGAACTGCCCAAGTATGTTTTGAGCGAGCCAACCAACTTGATTTGAAGTAATAAGCAATGAGGAATTGTATGTTTTGCGTGCTAAATTGATTGTAAATCATCATGTATATTACAACCAACACTGTTTCATACCGTCTCTCACATTGATGGATTGGATTGGGCTTATTATTATTATTATTATTATGCTAACTCACTGTAGCTTCCTTTTGATCGAATCAAGTGTCTATTTGGAATTGTCACTTGTTGATGCCACCCCCAAAGCCTGGAATATTGCTTTACCC

mRNA sequence

ATGACCTCTGTTTTCTGTAAGCGAAGCTTCTTCGCTCTCTTCCCAAATCTCCCATTCCCTCTTCCATCTCTTCTCATCCTTCCTTCTTTCTTTCTTCTTGTAATTTTGCGCTCTTTAATGGGTTGTGCCGGATCGTCGCAGGCCAAAGGCGACGGGCCTGTGAAAAAAATTCGGAAGCCTAAAGCTTGGAAGCATCCCCAGCCAATAACAAAGACAGATCTTGCGCGGATGCGTGATGAATTTTGGGATACTGCTCCTCATTATGGTGGCACAAAAGAGATATGGGATGCACTACGAGCTGCTGCAGAAGCTGATCTGACACTAGCACAAGCAATAGTGGATAGTGCAGGCGTCATTGTACAAAGTGCTGATTTAACAATTTGTTACGATGAAAGAGGTGCAAGATACGAACTGCCCAAGTATGTTTTGAGCGAGCCAACCAACTTGATTTGAAGTAATAAGCAATGAGGAATTGTATGTTTTGCGTGCTAAATTGATTGTAAATCATCATGTATATTACAACCAACACTGTTTCATACCGTCTCTCACATTGATGGATTGGATTGGGCTTATTATTATTATTATTATTATGCTAACTCACTGTAGCTTCCTTTTGATCGAATCAAGTGTCTATTTGGAATTGTCACTTGTTGATGCCACCCCCAAAGCCTGGAATATTGCTTTACCC

Coding sequence (CDS)

ATGACCTCTGTTTTCTGTAAGCGAAGCTTCTTCGCTCTCTTCCCAAATCTCCCATTCCCTCTTCCATCTCTTCTCATCCTTCCTTCTTTCTTTCTTCTTGTAATTTTGCGCTCTTTAATGGGTTGTGCCGGATCGTCGCAGGCCAAAGGCGACGGGCCTGTGAAAAAAATTCGGAAGCCTAAAGCTTGGAAGCATCCCCAGCCAATAACAAAGACAGATCTTGCGCGGATGCGTGATGAATTTTGGGATACTGCTCCTCATTATGGTGGCACAAAAGAGATATGGGATGCACTACGAGCTGCTGCAGAAGCTGATCTGACACTAGCACAAGCAATAGTGGATAGTGCAGGCGTCATTGTACAAAGTGCTGATTTAACAATTTGTTACGATGAAAGAGGTGCAAGATACGAACTGCCCAAGTATGTTTTGAGCGAGCCAACCAACTTGATTTGA

Protein sequence

MTSVFCKRSFFALFPNLPFPLPSLLILPSFFLLVILRSLMGCAGSSQAKGDGPVKKIRKPKAWKHPQPITKTDLARMRDEFWDTAPHYGGTKEIWDALRAAAEADLTLAQAIVDSAGVIVQSADLTICYDERGARYELPKYVLSEPTNLI

Homology

[Close]

BLAST of CmoCh01G013080.1 vs. ExPASy Swiss-Prot
Match: Q6DG43 (Ubiquitin domain-containing protein 2 OS=Danio rerio OX=7955 GN=ubtd2 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.4e-22
Identity = 58/111 (52.25%), Postives = 68/111 (61.26%), Query Frame = 0


Query: 44  GSSQAKGDGPVKKIRKPKAWKHPQPITKTDLARMRDEFWDTAPHYGGTKEIWDALRAAAE 103
           G+  A G     K  KPK WK   P+T   L   RDEFWDTAP + G KEIWDAL+AAA+
Sbjct: 21  GTGVALGRNQPLKREKPK-WKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAQ 80

Query: 104 A----DLTLAQAIVDSAGVIVQSADLTICYDERGARYELPKYVLSEPTNLI 151
           A    D  LAQAI+D A + +    LT CYDE G RY+LP Y LS P N+I
Sbjct: 81  AFESNDHELAQAIIDGASITLPHGALTECYDELGNRYQLPVYCLSPPVNMI 130

[Close]

BLAST of CmoCh01G013080.1 vs. ExPASy Swiss-Prot
Match: Q4V8W7 (Ubiquitin domain-containing protein 1 OS=Danio rerio OX=7955 GN=ubtd1 PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.3e-22
Identity = 63/128 (49.22%), Postives = 74/128 (57.81%), Query Frame = 0


Query: 41  GCAGSSQAKGDG--------------PVKKIRKPKAWKHPQPITKTDLARMRDEFWDTAP 100
           GC G  +A+  G              P+KK  KPK WK   P+T+  L   RDEFWDTAP
Sbjct: 3   GCVGRERAETRGRGSRTQRKRGGRNEPLKK-DKPK-WKSDYPMTEGQLRSKRDEFWDTAP 62

Query: 101 HYGGTKEIWDALRAAAEA----DLTLAQAIVDSAGVIVQSADLTICYDERGARYELPKYV 151
            + G KEIWDAL+AAA A    D  LAQAIVD A + +    LT CYDE G RY+LP Y 
Sbjct: 63  AFEGRKEIWDALKAAAVALECSDHELAQAIVDGANITLPHGSLTECYDELGNRYQLPVYC 122

[Close]

BLAST of CmoCh01G013080.1 vs. ExPASy Swiss-Prot
Match: Q5EAE3 (Ubiquitin domain-containing protein 2 OS=Bos taurus OX=9913 GN=UBTD2 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 6.8e-22
Identity = 57/111 (51.35%), Postives = 67/111 (60.36%), Query Frame = 0


Query: 44  GSSQAKGDGPVKKIRKPKAWKHPQPITKTDLARMRDEFWDTAPHYGGTKEIWDALRAAAE 103
           G+  A G     K  KPK WK   P+T   L   RDEFWDTAP + G KEIWDAL+AAA 
Sbjct: 21  GTGVALGRNQPLKKEKPK-WKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAH 80

Query: 104 A----DLTLAQAIVDSAGVIVQSADLTICYDERGARYELPKYVLSEPTNLI 151
           A    D  LAQAI+D A + +    LT CYDE G RY+LP Y L+ P N+I
Sbjct: 81  AFESNDHELAQAIIDGANITLPHGALTECYDELGNRYQLPVYCLAPPINMI 130

[Close]

BLAST of CmoCh01G013080.1 vs. ExPASy Swiss-Prot
Match: Q8WUN7 (Ubiquitin domain-containing protein 2 OS=Homo sapiens OX=9606 GN=UBTD2 PE=1 SV=2)

HSP 1 Score: 105.1 bits (261), Expect = 6.8e-22
Identity = 57/111 (51.35%), Postives = 67/111 (60.36%), Query Frame = 0


Query: 44  GSSQAKGDGPVKKIRKPKAWKHPQPITKTDLARMRDEFWDTAPHYGGTKEIWDALRAAAE 103
           G+  A G     K  KPK WK   P+T   L   RDEFWDTAP + G KEIWDAL+AAA 
Sbjct: 21  GTGVALGRNQPLKKEKPK-WKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAH 80

Query: 104 A----DLTLAQAIVDSAGVIVQSADLTICYDERGARYELPKYVLSEPTNLI 151
           A    D  LAQAI+D A + +    LT CYDE G RY+LP Y L+ P N+I
Sbjct: 81  AFESNDHELAQAIIDGANITLPHGALTECYDELGNRYQLPVYCLAPPINMI 130

[Close]

BLAST of CmoCh01G013080.1 vs. ExPASy Swiss-Prot
Match: Q6PGH0 (Ubiquitin domain-containing protein 2 OS=Mus musculus OX=10090 GN=Ubtd2 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 6.8e-22
Identity = 57/111 (51.35%), Postives = 67/111 (60.36%), Query Frame = 0


Query: 44  GSSQAKGDGPVKKIRKPKAWKHPQPITKTDLARMRDEFWDTAPHYGGTKEIWDALRAAAE 103
           G+  A G     K  KPK WK   P+T   L   RDEFWDTAP + G KEIWDAL+AAA 
Sbjct: 21  GTGVALGRNQPLKKEKPK-WKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAH 80

Query: 104 A----DLTLAQAIVDSAGVIVQSADLTICYDERGARYELPKYVLSEPTNLI 151
           A    D  LAQAI+D A + +    LT CYDE G RY+LP Y L+ P N+I
Sbjct: 81  AFESNDHELAQAIIDGANITLPHGALTECYDELGNRYQLPVYCLAPPINMI 130

[Close]

BLAST of CmoCh01G013080.1 vs. ExPASy TrEMBL
Match: A0A6J1IYX4 (ubiquitin domain-containing protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111480432 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.8e-57
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 40  MGCAGSSQAKGDGPVKKIRKPKAWKHPQPITKTDLARMRDEFWDTAPHYGGTKEIWDALR 99
           MGCAGSSQAKGDGPVKKIRKPKAWKHPQPITKTDLARMRDEFWDTAPHYGGTKEIWDALR
Sbjct: 1   MGCAGSSQAKGDGPVKKIRKPKAWKHPQPITKTDLARMRDEFWDTAPHYGGTKEIWDALR 60

Query: 100 AAAEADLTLAQAIVDSAGVIVQSADLTICYDERGARYELPKYVLSEPTNLI 151
           AAAEADLTLAQAIVDSAGVIVQSADLTICYDERGARYELPKYVLSEPTNLI
Sbjct: 61  AAAEADLTLAQAIVDSAGVIVQSADLTICYDERGARYELPKYVLSEPTNLI 111

[Close]

BLAST of CmoCh01G013080.1 vs. ExPASy TrEMBL
Match: A0A6J1FML0 (ubiquitin domain-containing protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111446780 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.8e-57
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 40  MGCAGSSQAKGDGPVKKIRKPKAWKHPQPITKTDLARMRDEFWDTAPHYGGTKEIWDALR 99
           MGCAGSSQAKGDGPVKKIRKPKAWKHPQPITKTDLARMRDEFWDTAPHYGGTKEIWDALR
Sbjct: 1   MGCAGSSQAKGDGPVKKIRKPKAWKHPQPITKTDLARMRDEFWDTAPHYGGTKEIWDALR 60

Query: 100 AAAEADLTLAQAIVDSAGVIVQSADLTICYDERGARYELPKYVLSEPTNLI 151
           AAAEADLTLAQAIVDSAGVIVQSADLTICYDERGARYELPKYVLSEPTNLI
Sbjct: 61  AAAEADLTLAQAIVDSAGVIVQSADLTICYDERGARYELPKYVLSEPTNLI 111

[Close]

BLAST of CmoCh01G013080.1 vs. ExPASy TrEMBL
Match: A0A6J1CTM1 (ubiquitin domain-containing protein 1-like OS=Momordica charantia OX=3673 GN=LOC111014152 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 4.9e-55
Identity = 106/111 (95.50%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 40  MGCAGSSQAKGDGPVKKIRKPKAWKHPQPITKTDLARMRDEFWDTAPHYGGTKEIWDALR 99
           MGCAGSSQAKGDGPVKKIRKPKAWKHPQPITKT+L +MRDEFWDTAPHYGG KEIWDALR
Sbjct: 1   MGCAGSSQAKGDGPVKKIRKPKAWKHPQPITKTELVQMRDEFWDTAPHYGGRKEIWDALR 60

Query: 100 AAAEADLTLAQAIVDSAGVIVQSADLTICYDERGARYELPKYVLSEPTNLI 151
           AAAEADLTLAQAIVDSAGVIVQSADLTICYDERGA+YELPKYVLSEPTNLI
Sbjct: 61  AAAEADLTLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLI 111

[Close]

BLAST of CmoCh01G013080.1 vs. ExPASy TrEMBL
Match: A0A1S3CJZ5 (ubiquitin domain-containing protein 1-like OS=Cucumis melo OX=3656 GN=LOC103501821 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.6e-53
Identity = 104/111 (93.69%), Postives = 107/111 (96.40%), Query Frame = 0


Query: 40  MGCAGSSQAKGDGPVKKIRKPKAWKHPQPITKTDLARMRDEFWDTAPHYGGTKEIWDALR 99
           MGCAGSSQAKGDG VKKIRKPK WK+PQPITKTDL RMRDEFWDTAPHYGG KEIWDALR
Sbjct: 1   MGCAGSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALR 60

Query: 100 AAAEADLTLAQAIVDSAGVIVQSADLTICYDERGARYELPKYVLSEPTNLI 151
           AAAEADLTLAQAIVDSAG+IVQSADLTICYDERGA+YELPKYVLSEPTNLI
Sbjct: 61  AAAEADLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLI 111

[Close]

BLAST of CmoCh01G013080.1 vs. ExPASy TrEMBL
Match: A0A0A0KZH7 (UBD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G626080 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 2.0e-53
Identity = 103/111 (92.79%), Postives = 107/111 (96.40%), Query Frame = 0


Query: 40  MGCAGSSQAKGDGPVKKIRKPKAWKHPQPITKTDLARMRDEFWDTAPHYGGTKEIWDALR 99
           MGCAGSSQAKGDG VKKIRKPK WK+PQPITKTDL RMRDEFWDTAPHYGG KEIWDALR
Sbjct: 1   MGCAGSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALR 60

Query: 100 AAAEADLTLAQAIVDSAGVIVQSADLTICYDERGARYELPKYVLSEPTNLI 151
           AAAEADLTLAQAIVDSAG+IVQSADLTICYDERGA+YELPKYVLSEPTNL+
Sbjct: 61  AAAEADLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLV 111

[Close]

BLAST of CmoCh01G013080.1 vs. NCBI nr
Match: XP_022941497.1 (ubiquitin domain-containing protein 1-like [Cucurbita moschata] >XP_022981235.1 ubiquitin domain-containing protein 1-like [Cucurbita maxima] >XP_023525955.1 ubiquitin domain-containing protein 1-like [Cucurbita pepo subsp. pepo] >KAG6607920.1 Ubiquitin domain-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037447.1 Ubiquitin domain-containing protein 1 [Cucurbita argyrosperma subsp. argyrosperma] >KAG6607927.1 Ubiquitin domain-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 231.9 bits (590), Expect = 3.7e-57
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 40  MGCAGSSQAKGDGPVKKIRKPKAWKHPQPITKTDLARMRDEFWDTAPHYGGTKEIWDALR 99
           MGCAGSSQAKGDGPVKKIRKPKAWKHPQPITKTDLARMRDEFWDTAPHYGGTKEIWDALR
Sbjct: 1   MGCAGSSQAKGDGPVKKIRKPKAWKHPQPITKTDLARMRDEFWDTAPHYGGTKEIWDALR 60

Query: 100 AAAEADLTLAQAIVDSAGVIVQSADLTICYDERGARYELPKYVLSEPTNLI 151
           AAAEADLTLAQAIVDSAGVIVQSADLTICYDERGARYELPKYVLSEPTNLI
Sbjct: 61  AAAEADLTLAQAIVDSAGVIVQSADLTICYDERGARYELPKYVLSEPTNLI 111

[Close]

BLAST of CmoCh01G013080.1 vs. NCBI nr
Match: XP_022144511.1 (ubiquitin domain-containing protein 1-like [Momordica charantia])

HSP 1 Score: 223.8 bits (569), Expect = 1.0e-54
Identity = 106/111 (95.50%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 40  MGCAGSSQAKGDGPVKKIRKPKAWKHPQPITKTDLARMRDEFWDTAPHYGGTKEIWDALR 99
           MGCAGSSQAKGDGPVKKIRKPKAWKHPQPITKT+L +MRDEFWDTAPHYGG KEIWDALR
Sbjct: 1   MGCAGSSQAKGDGPVKKIRKPKAWKHPQPITKTELVQMRDEFWDTAPHYGGRKEIWDALR 60

Query: 100 AAAEADLTLAQAIVDSAGVIVQSADLTICYDERGARYELPKYVLSEPTNLI 151
           AAAEADLTLAQAIVDSAGVIVQSADLTICYDERGA+YELPKYVLSEPTNLI
Sbjct: 61  AAAEADLTLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLI 111

[Close]

BLAST of CmoCh01G013080.1 vs. NCBI nr
Match: XP_038898666.1 (ubiquitin domain-containing protein 1-like [Benincasa hispida])

HSP 1 Score: 221.5 bits (563), Expect = 5.0e-54
Identity = 105/111 (94.59%), Postives = 108/111 (97.30%), Query Frame = 0


Query: 40  MGCAGSSQAKGDGPVKKIRKPKAWKHPQPITKTDLARMRDEFWDTAPHYGGTKEIWDALR 99
           MGCAGSSQAKG+GPVKKIRKPK WKHPQPI+KTDL RMRDEFWDTAPHYGG KEIWDALR
Sbjct: 1   MGCAGSSQAKGNGPVKKIRKPKPWKHPQPISKTDLVRMRDEFWDTAPHYGGRKEIWDALR 60

Query: 100 AAAEADLTLAQAIVDSAGVIVQSADLTICYDERGARYELPKYVLSEPTNLI 151
           AAAEADLTLAQAIVDSAGVIVQSADLTICYDERGA+YELPKYVLSEPTNLI
Sbjct: 61  AAAEADLTLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLI 111

[Close]

BLAST of CmoCh01G013080.1 vs. NCBI nr
Match: XP_008463752.1 (PREDICTED: ubiquitin domain-containing protein 1-like [Cucumis melo])

HSP 1 Score: 218.8 bits (556), Expect = 3.2e-53
Identity = 104/111 (93.69%), Postives = 107/111 (96.40%), Query Frame = 0


Query: 40  MGCAGSSQAKGDGPVKKIRKPKAWKHPQPITKTDLARMRDEFWDTAPHYGGTKEIWDALR 99
           MGCAGSSQAKGDG VKKIRKPK WK+PQPITKTDL RMRDEFWDTAPHYGG KEIWDALR
Sbjct: 1   MGCAGSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALR 60

Query: 100 AAAEADLTLAQAIVDSAGVIVQSADLTICYDERGARYELPKYVLSEPTNLI 151
           AAAEADLTLAQAIVDSAG+IVQSADLTICYDERGA+YELPKYVLSEPTNLI
Sbjct: 61  AAAEADLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLI 111

[Close]

BLAST of CmoCh01G013080.1 vs. NCBI nr
Match: XP_004146021.1 (ubiquitin domain-containing protein 1 [Cucumis sativus] >KGN55055.1 hypothetical protein Csa_012079 [Cucumis sativus])

HSP 1 Score: 218.4 bits (555), Expect = 4.2e-53
Identity = 103/111 (92.79%), Postives = 107/111 (96.40%), Query Frame = 0


Query: 40  MGCAGSSQAKGDGPVKKIRKPKAWKHPQPITKTDLARMRDEFWDTAPHYGGTKEIWDALR 99
           MGCAGSSQAKGDG VKKIRKPK WK+PQPITKTDL RMRDEFWDTAPHYGG KEIWDALR
Sbjct: 1   MGCAGSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALR 60

Query: 100 AAAEADLTLAQAIVDSAGVIVQSADLTICYDERGARYELPKYVLSEPTNLI 151
           AAAEADLTLAQAIVDSAG+IVQSADLTICYDERGA+YELPKYVLSEPTNL+
Sbjct: 61  AAAEADLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLV 111

[Close]

BLAST of CmoCh01G013080.1 vs. TAIR 10
Match: AT1G53400.1 (Ubiquitin domain-containing protein )

HSP 1 Score: 198.0 bits (502), Expect = 5.5e-51
Identity = 90/110 (81.82%), Postives = 102/110 (92.73%), Query Frame = 0


Query: 40  MGCAGSSQAKGDGPVKKIRKPKAWKHPQPITKTDLARMRDEFWDTAPHYGGTKEIWDALR 99
           MGCAGS+Q++ DG VKKIRKPK WKH QPITK +L ++R+EFWDTAPHYGG KEIWDALR
Sbjct: 1   MGCAGSTQSQADGSVKKIRKPKPWKHTQPITKAELMKLREEFWDTAPHYGGRKEIWDALR 60

Query: 100 AAAEADLTLAQAIVDSAGVIVQSADLTICYDERGARYELPKYVLSEPTNL 150
           AAAEAD++LAQAIVDSAGVIVQ+ DLT+CYDERGA+YELPKYVLSEPTNL
Sbjct: 61  AAAEADISLAQAIVDSAGVIVQNTDLTVCYDERGAKYELPKYVLSEPTNL 110

[Close]

BLAST of CmoCh01G013080.1 vs. TAIR 10
Match: AT5G45740.1 (Ubiquitin domain-containing protein )

HSP 1 Score: 176.8 bits (447), Expect = 1.3e-44
Identity = 83/113 (73.45%), Postives = 95/113 (84.07%), Query Frame = 0


Query: 40  MGCAGSSQAKGDGPV--KKIRKPKAWKHPQPITKTDLARMRDEFWDTAPHYGGTKEIWDA 99
           MGC GSSQA+ +G    KKI KPK W H +PIT+  L  MR+EFWDT+PHYGG +EIW+A
Sbjct: 1   MGCIGSSQARNEGGAKRKKIMKPKPWAHTEPITRAQLTNMREEFWDTSPHYGGQREIWEA 60

Query: 100 LRAAAEADLTLAQAIVDSAGVIVQSADLTICYDERGARYELPKYVLSEPTNLI 151
           LRAAAEADL LAQ IVDSAGVIVQ+ DLT+C+DERGARYELP+YVLSEPTNLI
Sbjct: 61  LRAAAEADLKLAQTIVDSAGVIVQNRDLTLCWDERGARYELPRYVLSEPTNLI 113

[Close]

BLAST of CmoCh01G013080.1 vs. TAIR 10
Match: AT1G16960.1 (Ubiquitin domain-containing protein )

HSP 1 Score: 167.5 bits (423), Expect = 7.9e-42
Identity = 78/112 (69.64%), Postives = 97/112 (86.61%), Query Frame = 0


Query: 40  MGCAGSSQAKGDGPVKKIRKPKAWKHPQPITKTDLARMRDEFWDTAPHYGGTKEIWDALR 99
           MGC+ SS+   +G  +KIR+PK WKHPQPI++ +L +MR+EFWDTAPHYGG KEIWDALR
Sbjct: 1   MGCS-SSRTIAEGKKEKIRRPKTWKHPQPISRDELTQMREEFWDTAPHYGGKKEIWDALR 60

Query: 100 AAAEA-DLTLAQAIVDSAGVIVQSADLTICYDERGARYELPKYVLSEPTNLI 151
           AAAE  DL+LAQ I++SAGVIVQ+ DLTICYDE+G++YELPKYVL +P+NLI
Sbjct: 61  AAAEEDDLSLAQTILESAGVIVQNTDLTICYDEKGSKYELPKYVLRDPSNLI 111

The following BLAST results are available for this feature:

BLAST of CmoCh01G013080.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6DG43	1.4e-22	52.25	Ubiquitin domain-containing protein 2 OS=Danio rerio OX=7955 GN=ubtd2 PE=2 SV=1	[more]
Q4V8W7	2.3e-22	49.22	Ubiquitin domain-containing protein 1 OS=Danio rerio OX=7955 GN=ubtd1 PE=2 SV=1	[more]
Q5EAE3	6.8e-22	51.35	Ubiquitin domain-containing protein 2 OS=Bos taurus OX=9913 GN=UBTD2 PE=2 SV=1	[more]
Q8WUN7	6.8e-22	51.35	Ubiquitin domain-containing protein 2 OS=Homo sapiens OX=9606 GN=UBTD2 PE=1 SV=2	[more]
Q6PGH0	6.8e-22	51.35	Ubiquitin domain-containing protein 2 OS=Mus musculus OX=10090 GN=Ubtd2 PE=2 SV=...	[more]

BLAST of CmoCh01G013080.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IYX4	1.8e-57	100.00	ubiquitin domain-containing protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1FML0	1.8e-57	100.00	ubiquitin domain-containing protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1CTM1	4.9e-55	95.50	ubiquitin domain-containing protein 1-like OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A1S3CJZ5	1.6e-53	93.69	ubiquitin domain-containing protein 1-like OS=Cucumis melo OX=3656 GN=LOC1035018...	[more]
A0A0A0KZH7	2.0e-53	92.79	UBD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G626080 PE=4 SV...	[more]

BLAST of CmoCh01G013080.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941497.1	3.7e-57	100.00	ubiquitin domain-containing protein 1-like [Cucurbita moschata] >XP_022981235.1 ...	[more]
XP_022144511.1	1.0e-54	95.50	ubiquitin domain-containing protein 1-like [Momordica charantia]	[more]
XP_038898666.1	5.0e-54	94.59	ubiquitin domain-containing protein 1-like [Benincasa hispida]	[more]
XP_008463752.1	3.2e-53	93.69	PREDICTED: ubiquitin domain-containing protein 1-like [Cucumis melo]	[more]
XP_004146021.1	4.2e-53	92.79	ubiquitin domain-containing protein 1 [Cucumis sativus] >KGN55055.1 hypothetical...	[more]

BLAST of CmoCh01G013080.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G53400.1	5.5e-51	81.82	Ubiquitin domain-containing protein	[more]
AT5G45740.1	1.3e-44	73.45	Ubiquitin domain-containing protein	[more]
AT1G16960.1	7.9e-42	69.64	Ubiquitin domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032752	DC-UbP/UBTD2, N-terminal domain	PFAM	PF16455	UBD	coord: 55..150 e-value: 1.3E-33 score: 115.2
IPR038169	DC-UbP/UBTD2, N-terminal domain superfamily	GENE3D	1.20.225.20		coord: 70..143 e-value: 3.7E-27 score: 96.4
IPR039869	Ubiquitin domain-containing protein 1/2	PANTHER	PTHR13609	UBIQUITIN DOMAIN CONTAINING 1 PROTEIN-RELATED	coord: 40..149
None	No IPR available	PANTHER	PTHR13609:SF25	BINDING PROTEIN, PUTATIVE-RELATED	coord: 40..149

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh01G013080	CmoCh01G013080	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G013080.1:exon:4830	CmoCh01G013080.1:exon:4830	exon
CmoCh01G013080.1:exon:4829	CmoCh01G013080.1:exon:4829	exon
CmoCh01G013080.1:exon:4828	CmoCh01G013080.1:exon:4828	exon
CmoCh01G013080.1:exon:4827	CmoCh01G013080.1:exon:4827	exon
CmoCh01G013080.1:exon:4826	CmoCh01G013080.1:exon:4826	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G013080.1:three_prime_utr	CmoCh01G013080.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G013080.1:cds	CmoCh01G013080.1:cds_5	CDS
CmoCh01G013080.1:cds	CmoCh01G013080.1:cds_4	CDS
CmoCh01G013080.1:cds	CmoCh01G013080.1:cds_3	CDS
CmoCh01G013080.1:cds	CmoCh01G013080.1:cds_2	CDS
CmoCh01G013080.1:cds	CmoCh01G013080.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh01G013080.1	CmoCh01G013080.1-protein	polypeptide