CmoCh01G007530.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G007530.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Structure-specific endonuclease subunit SLX1 homolog
Location	Cmo_Chr01: 3886714 .. 3887615 (-)
Sequence length	548
RNA-Seq Expression	CmoCh01G007530.1
Synteny	CmoCh01G007530.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAATCGGGAATCGGGATGTGTTTTCGTCGGCCGGCGATAACCAGATCGGAACCCTAAGAGAGATTCGTTTCAGATTTTTAAAACTAAATTTAGGGCAACGCAAAGTTGACTAAAGCCTTCCGGTAAGATCGAGACGGCGAATTTCGATGCGAGACTGACAATGGGATTAAATCAATTAGGGCTAAACGACGAATTCATTTATATAAGCTAATAAATTCCCTTTGAAGTTGTACGCCAACGGTCTAATTGTATTATTGAGCAGATTTTCTTCTTCCAGAGAGACAGAGAGATGAGGAAGAGGAAAGAGAAATCGGAGATCTCTGAAGCTACGGCGGTTGCAGAGGAGGAGGAGAAGGAAGACGATGAAGATGAAGGAAGCGGCAACGAATCGAACGGCTTCTTTTCATGCTATCTCTTGGCCTCTGTCTGCCCTTGTTTCAAAGGCCATACCTATATCGGGTTCGAATCCTTTCCTTCTTCTCGAACAAATTTTCTGCTTCTCTATGAAATAATGGCTTGAAATCCTCCATTTTCACGATTTCTTGATGCTCGAATCTGTTCCGATACTCCGATACTGGAAATTGTTTTACGATCTTTGAATCTGCAAATCTCTCGCTCTCTGCATAAATTGATCTCTGGATGCTCGAATCTGTTCCTCTACTCCCCGATACTGAAAATCGTTTTACGATCTTTGAATCTGTTCCTCTCTCGCTTTCTGCATAAATTGATTGAGGGAAAACATCAAGAAATATAGGAAATGTGTAAATCAATCTGCAGTGAACTGATTGGATTACTGTTTATATTGAATTTCAGATTCACAGTGAACCCTAAACGCAGAATCAGGCAGCACAATGGTGAAATTAGATGCGGTGCGTGGCGTACTAAGAGGAAGAGACCATGA

mRNA sequence

TGAATCGGGAATCGGGATGTGTTTTCGTCGGCCGGCGATAACCAGATCGGAACCCTAAGAGAGATTCGTTTCAGATTTTTAAAACTAAATTTAGGGCAACGCAAAGTTGACTAAAGCCTTCCGGTAAGATCGAGACGGCGAATTTCGATGCGAGACTGACAATGGGATTAAATCAATTAGGGCTAAACGACGAATTCATTTATATAAGCTAATAAATTCCCTTTGAAGTTGTACGCCAACGGTCTAATTGTATTATTGAGCAGATTTTCTTCTTCCAGAGAGACAGAGAGATGAGGAAGAGGAAAGAGAAATCGGAGATCTCTGAAGCTACGGCGGTTGCAGAGGAGGAGGAGAAGGAAGACGATGAAGATGAAGGAAGCGGCAACGAATCGAACGGCTTCTTTTCATGCTATCTCTTGGCCTCTGTCTGCCCTTGTTTCAAAGGCCATACCTATATCGGATTCACAGTGAACCCTAAACGCAGAATCAGGCAGCACAATGGTGAAATTAGATGCGGTGCGTGGCGTACTAAGAGGAAGAGACCATGA

Coding sequence (CDS)

ATGAGGAAGAGGAAAGAGAAATCGGAGATCTCTGAAGCTACGGCGGTTGCAGAGGAGGAGGAGAAGGAAGACGATGAAGATGAAGGAAGCGGCAACGAATCGAACGGCTTCTTTTCATGCTATCTCTTGGCCTCTGTCTGCCCTTGTTTCAAAGGCCATACCTATATCGGATTCACAGTGAACCCTAAACGCAGAATCAGGCAGCACAATGGTGAAATTAGATGCGGTGCGTGGCGTACTAAGAGGAAGAGACCATGA

Protein sequence

MRKRKEKSEISEATAVAEEEEKEDDEDEGSGNESNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRP

Homology

[Close]

BLAST of CmoCh01G007530.1 vs. ExPASy Swiss-Prot
Match: A7STV9 (Structure-specific endonuclease subunit SLX1 homolog OS=Nematostella vectensis OX=45351 GN=v1g174298 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-10
Identity = 36/63 (57.14%), Postives = 43/63 (68.25%), Query Frame = 0


Query: 24 DDEDEGSGNESNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEI-RCGAWRTKR 83
          DD   GS     GF   YLL  V P FKGHTYIG+TVNP RRI+QHNG + + GA++T R
Sbjct: 2  DDNIAGS-----GFHGVYLLYCVNPKFKGHTYIGYTVNPNRRIKQHNGGVDKGGAYKTSR 59

Query: 84 KRP 86
          K+P
Sbjct: 62 KKP 59

[Close]

BLAST of CmoCh01G007530.1 vs. ExPASy Swiss-Prot
Match: P0CN81 (Structure-specific endonuclease subunit SLX1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=SLX1 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.2e-09
Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 0


Query: 37 FFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRP 86
          F++CYLL S        TY+G T +P RRIRQHNGE++ GAW T R RP
Sbjct: 28 FYACYLLRSKATANSNRTYVGSTPDPPRRIRQHNGELKQGAWSTSRHRP 76

[Close]

BLAST of CmoCh01G007530.1 vs. ExPASy Swiss-Prot
Match: P0CN80 (Structure-specific endonuclease subunit SLX1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=SLX1 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.2e-09
Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 0


Query: 37 FFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRP 86
          F++CYLL S        TY+G T +P RRIRQHNGE++ GAW T R RP
Sbjct: 28 FYACYLLRSKATANSNRTYVGSTPDPPRRIRQHNGELKQGAWSTSRHRP 76

[Close]

BLAST of CmoCh01G007530.1 vs. ExPASy Swiss-Prot
Match: Q4D7L5 (Structure-specific endonuclease subunit SLX1 homolog 1 OS=Trypanosoma cruzi (strain CL Brener) OX=353153 GN=Tc00.1047053509453.60 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.7e-09
Identity = 29/47 (61.70%), Postives = 34/47 (72.34%), Query Frame = 0


Query: 37 FFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRK 84
          F   YLL S+ P   G  YIG+TV+P RR+RQHNGEI  GAWRTKR+
Sbjct: 5  FHCVYLLTSLDPQCAGEYYIGYTVDPIRRLRQHNGEIVSGAWRTKRR 51

[Close]

BLAST of CmoCh01G007530.1 vs. ExPASy Swiss-Prot
Match: Q4CTY5 (Structure-specific endonuclease subunit SLX1 homolog 2 OS=Trypanosoma cruzi (strain CL Brener) OX=353153 GN=Tc00.1047053511881.30 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.7e-09
Identity = 29/47 (61.70%), Postives = 34/47 (72.34%), Query Frame = 0


Query: 37 FFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRK 84
          F   YLL S+ P   G  YIG+TV+P RR+RQHNGEI  GAWRTKR+
Sbjct: 5  FHCVYLLTSLDPQCAGEYYIGYTVDPIRRLRQHNGEIVSGAWRTKRR 51

[Close]

BLAST of CmoCh01G007530.1 vs. ExPASy TrEMBL
Match: A0A6J1I681 (Structure-specific endonuclease subunit SLX1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111469571 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 3.1e-30
Identity = 71/85 (83.53%), Postives = 75/85 (88.24%), Query Frame = 0


Query: 1  MRKRKEKSEISEATAVAEEEEKEDDEDEGSGNESNGFFSCYLLASVCPCFKGHTYIGFTV 60
          MR+RKEK EI +  AVA EE+KEDDEDE  GNE NGFFSCYLLAS CP +KGHTYIGFTV
Sbjct: 1  MRRRKEKPEIPKTMAVA-EEKKEDDEDEERGNEGNGFFSCYLLASACPRYKGHTYIGFTV 60

Query: 61 NPKRRIRQHNGEIRCGAWRTKRKRP 86
          NPKRRIRQHNGEIRCGAWRTKRKRP
Sbjct: 61 NPKRRIRQHNGEIRCGAWRTKRKRP 84

[Close]

BLAST of CmoCh01G007530.1 vs. ExPASy TrEMBL
Match: A0A6J1HZQ2 (Structure-specific endonuclease subunit SLX1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111469571 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 3.1e-30
Identity = 71/85 (83.53%), Postives = 75/85 (88.24%), Query Frame = 0


Query: 1  MRKRKEKSEISEATAVAEEEEKEDDEDEGSGNESNGFFSCYLLASVCPCFKGHTYIGFTV 60
          MR+RKEK EI +  AVA EE+KEDDEDE  GNE NGFFSCYLLAS CP +KGHTYIGFTV
Sbjct: 1  MRRRKEKPEIPKTMAVA-EEKKEDDEDEERGNEGNGFFSCYLLASACPRYKGHTYIGFTV 60

Query: 61 NPKRRIRQHNGEIRCGAWRTKRKRP 86
          NPKRRIRQHNGEIRCGAWRTKRKRP
Sbjct: 61 NPKRRIRQHNGEIRCGAWRTKRKRP 84

[Close]

BLAST of CmoCh01G007530.1 vs. ExPASy TrEMBL
Match: A0A6J1HKB9 (Structure-specific endonuclease subunit SLX1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111464889 PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.6e-29
Identity = 70/85 (82.35%), Postives = 74/85 (87.06%), Query Frame = 0


Query: 1  MRKRKEKSEISEATAVAEEEEKEDDEDEGSGNESNGFFSCYLLASVCPCFKGHTYIGFTV 60
          MR+RKEK EI +  AVA EE+KEDDEDE  GNE N FFSCYLLAS CP +KGHTYIGFTV
Sbjct: 1  MRRRKEKPEIPKTMAVA-EEKKEDDEDEERGNEGNRFFSCYLLASACPRYKGHTYIGFTV 60

Query: 61 NPKRRIRQHNGEIRCGAWRTKRKRP 86
          NPKRRIRQHNGEIRCGAWRTKRKRP
Sbjct: 61 NPKRRIRQHNGEIRCGAWRTKRKRP 84

[Close]

BLAST of CmoCh01G007530.1 vs. ExPASy TrEMBL
Match: A0A6J1HMD6 (Structure-specific endonuclease subunit SLX1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111464889 PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.6e-29
Identity = 70/85 (82.35%), Postives = 74/85 (87.06%), Query Frame = 0


Query: 1  MRKRKEKSEISEATAVAEEEEKEDDEDEGSGNESNGFFSCYLLASVCPCFKGHTYIGFTV 60
          MR+RKEK EI +  AVA EE+KEDDEDE  GNE N FFSCYLLAS CP +KGHTYIGFTV
Sbjct: 1  MRRRKEKPEIPKTMAVA-EEKKEDDEDEERGNEGNRFFSCYLLASACPRYKGHTYIGFTV 60

Query: 61 NPKRRIRQHNGEIRCGAWRTKRKRP 86
          NPKRRIRQHNGEIRCGAWRTKRKRP
Sbjct: 61 NPKRRIRQHNGEIRCGAWRTKRKRP 84

[Close]

BLAST of CmoCh01G007530.1 vs. ExPASy TrEMBL
Match: A0A0A0M0Y6 (Structure-specific endonuclease subunit SLX1 homolog OS=Cucumis sativus OX=3659 GN=Csa_1G533630 PE=3 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.4e-29
Identity = 70/85 (82.35%), Postives = 73/85 (85.88%), Query Frame = 0


Query: 1  MRKRKEKSEISEATAVAEEEEKEDDEDEGSGNESNGFFSCYLLASVCPCFKGHTYIGFTV 60
          MRKRKEK EI + T    +EEKEDDE+E  GNE NGFFSCYLLAS CP FKGHTYIGFTV
Sbjct: 1  MRKRKEKPEICKTT----DEEKEDDEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTV 60

Query: 61 NPKRRIRQHNGEIRCGAWRTKRKRP 86
          NPKRRIRQHNGEIRCGAWRTKRKRP
Sbjct: 61 NPKRRIRQHNGEIRCGAWRTKRKRP 81

[Close]

BLAST of CmoCh01G007530.1 vs. NCBI nr
Match: KAG7037035.1 (Structure-specific endonuclease subunit SLX1-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 166.4 bits (420), Expect = 1.1e-37
Identity = 81/85 (95.29%), Postives = 83/85 (97.65%), Query Frame = 0


Query: 1  MRKRKEKSEISEATAVAEEEEKEDDEDEGSGNESNGFFSCYLLASVCPCFKGHTYIGFTV 60
          MRKRKEK +ISEATAVAEEEEKEDDEDEGSGN+SNGFFSCYLLASVCPCFKGHTYIGFTV
Sbjct: 1  MRKRKEKPDISEATAVAEEEEKEDDEDEGSGNKSNGFFSCYLLASVCPCFKGHTYIGFTV 60

Query: 61 NPKRRIRQHNGEIRCGAWRTKRKRP 86
          NPKRRIRQHNGEIRCG WRTKRKRP
Sbjct: 61 NPKRRIRQHNGEIRCGTWRTKRKRP 85

[Close]

BLAST of CmoCh01G007530.1 vs. NCBI nr
Match: KAG6607363.1 (Structure-specific endonuclease subunit SLX1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 148.3 bits (373), Expect = 3.0e-32
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 0


Query: 1  MRKRKEKSEISEATAVAEEEEKEDDEDEGSGNESNGFFSCYLLASVCPCFKGHTYIGFTV 60
          MRKRKEK EISEATAVAEEEEKEDDEDEGSGN+SNGFFSCYLLASVCPCFKGHTYIGFTV
Sbjct: 1  MRKRKEKPEISEATAVAEEEEKEDDEDEGSGNKSNGFFSCYLLASVCPCFKGHTYIGFTV 60

Query: 61 NPKRRIRQHNGEIRC 76
          NPKRRIRQHNGEIRC
Sbjct: 61 NPKRRIRQHNGEIRC 75

[Close]

BLAST of CmoCh01G007530.1 vs. NCBI nr
Match: KAG6583322.1 (Structure-specific endonuclease subunit SLX1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 140.6 bits (353), Expect = 6.3e-30
Identity = 71/85 (83.53%), Postives = 75/85 (88.24%), Query Frame = 0


Query: 1  MRKRKEKSEISEATAVAEEEEKEDDEDEGSGNESNGFFSCYLLASVCPCFKGHTYIGFTV 60
          MR+RKEK EI +  AVA EE+KEDDEDE  GNE NGFFSCYLLAS CP +KGHTYIGFTV
Sbjct: 1  MRRRKEKPEIPKTMAVA-EEKKEDDEDEERGNEENGFFSCYLLASACPRYKGHTYIGFTV 60

Query: 61 NPKRRIRQHNGEIRCGAWRTKRKRP 86
          NPKRRIRQHNGEIRCGAWRTKRKRP
Sbjct: 61 NPKRRIRQHNGEIRCGAWRTKRKRP 84

[Close]

BLAST of CmoCh01G007530.1 vs. NCBI nr
Match: XP_022970648.1 (uncharacterized protein LOC111469571 isoform X1 [Cucurbita maxima] >XP_022970649.1 uncharacterized protein LOC111469571 isoform X1 [Cucurbita maxima] >XP_022970650.1 uncharacterized protein LOC111469571 isoform X1 [Cucurbita maxima] >XP_022970651.1 uncharacterized protein LOC111469571 isoform X1 [Cucurbita maxima])

HSP 1 Score: 140.6 bits (353), Expect = 6.3e-30
Identity = 71/85 (83.53%), Postives = 75/85 (88.24%), Query Frame = 0


Query: 1  MRKRKEKSEISEATAVAEEEEKEDDEDEGSGNESNGFFSCYLLASVCPCFKGHTYIGFTV 60
          MR+RKEK EI +  AVA EE+KEDDEDE  GNE NGFFSCYLLAS CP +KGHTYIGFTV
Sbjct: 1  MRRRKEKPEIPKTMAVA-EEKKEDDEDEERGNEGNGFFSCYLLASACPRYKGHTYIGFTV 60

Query: 61 NPKRRIRQHNGEIRCGAWRTKRKRP 86
          NPKRRIRQHNGEIRCGAWRTKRKRP
Sbjct: 61 NPKRRIRQHNGEIRCGAWRTKRKRP 84

[Close]

BLAST of CmoCh01G007530.1 vs. NCBI nr
Match: XP_023519404.1 (uncharacterized protein LOC111782823 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023519405.1 uncharacterized protein LOC111782823 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 140.6 bits (353), Expect = 6.3e-30
Identity = 71/85 (83.53%), Postives = 75/85 (88.24%), Query Frame = 0


Query: 1  MRKRKEKSEISEATAVAEEEEKEDDEDEGSGNESNGFFSCYLLASVCPCFKGHTYIGFTV 60
          MR+RKEK EI +  AVA EE+KEDDEDE  GNE NGFFSCYLLAS CP +KGHTYIGFTV
Sbjct: 1  MRRRKEKPEIPKTMAVA-EEKKEDDEDEERGNEGNGFFSCYLLASACPRYKGHTYIGFTV 60

Query: 61 NPKRRIRQHNGEIRCGAWRTKRKRP 86
          NPKRRIRQHNGEIRCGAWRTKRKRP
Sbjct: 61 NPKRRIRQHNGEIRCGAWRTKRKRP 84

[Close]

BLAST of CmoCh01G007530.1 vs. TAIR 10
Match: AT2G30350.2 (Excinuclease ABC, C subunit, N-terminal )

HSP 1 Score: 92.8 bits (229), Expect = 1.4e-19
Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = 0


Query: 26 EDEGSGNESNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRP 85
          ED  +G +  GFF+CYLL S+ P  KG TYIGFTVNP+RRIRQHNGEI  GAWRTK+KRP
Sbjct: 16 EDGVTGKDGKGFFACYLLTSLSPRHKGQTYIGFTVNPRRRIRQHNGEITSGAWRTKKKRP 75

[Close]

BLAST of CmoCh01G007530.1 vs. TAIR 10
Match: AT5G43210.1 (Excinuclease ABC, C subunit, N-terminal )

HSP 1 Score: 41.6 bits (96), Expect = 3.7e-04
Identity = 22/48 (45.83%), Postives = 29/48 (60.42%), Query Frame = 0


Query: 38 FSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRP 86
          +S YL+ S     K  TY+G T +  RR++QHNGEIR GA  +   RP
Sbjct: 54 WSVYLILSTTEPIK--TYVGITTDFSRRLKQHNGEIRGGAKASSAGRP 99

The following BLAST results are available for this feature:

BLAST of CmoCh01G007530.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A7STV9	1.2e-10	57.14	Structure-specific endonuclease subunit SLX1 homolog OS=Nematostella vectensis O...	[more]
P0CN81	2.2e-09	55.10	Structure-specific endonuclease subunit SLX1 OS=Cryptococcus neoformans var. neo...	[more]
P0CN80	2.2e-09	55.10	Structure-specific endonuclease subunit SLX1 OS=Cryptococcus neoformans var. neo...	[more]
Q4D7L5	3.7e-09	61.70	Structure-specific endonuclease subunit SLX1 homolog 1 OS=Trypanosoma cruzi (str...	[more]
Q4CTY5	3.7e-09	61.70	Structure-specific endonuclease subunit SLX1 homolog 2 OS=Trypanosoma cruzi (str...	[more]

BLAST of CmoCh01G007530.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I681	3.1e-30	83.53	Structure-specific endonuclease subunit SLX1 homolog OS=Cucurbita maxima OX=3661...	[more]
A0A6J1HZQ2	3.1e-30	83.53	Structure-specific endonuclease subunit SLX1 homolog OS=Cucurbita maxima OX=3661...	[more]
A0A6J1HKB9	2.6e-29	82.35	Structure-specific endonuclease subunit SLX1 homolog OS=Cucurbita moschata OX=36...	[more]
A0A6J1HMD6	2.6e-29	82.35	Structure-specific endonuclease subunit SLX1 homolog OS=Cucurbita moschata OX=36...	[more]
A0A0A0M0Y6	3.4e-29	82.35	Structure-specific endonuclease subunit SLX1 homolog OS=Cucumis sativus OX=3659 ...	[more]

BLAST of CmoCh01G007530.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7037035.1	1.1e-37	95.29	Structure-specific endonuclease subunit SLX1-like protein, partial [Cucurbita ar...	[more]
KAG6607363.1	3.0e-32	97.33	Structure-specific endonuclease subunit SLX1, partial [Cucurbita argyrosperma su...	[more]
KAG6583322.1	6.3e-30	83.53	Structure-specific endonuclease subunit SLX1, partial [Cucurbita argyrosperma su...	[more]
XP_022970648.1	6.3e-30	83.53	uncharacterized protein LOC111469571 isoform X1 [Cucurbita maxima] >XP_022970649...	[more]
XP_023519404.1	6.3e-30	83.53	uncharacterized protein LOC111782823 isoform X2 [Cucurbita pepo subsp. pepo] >XP...	[more]

BLAST of CmoCh01G007530.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30350.2	1.4e-19	70.00	Excinuclease ABC, C subunit, N-terminal	[more]
AT5G43210.1	3.7e-04	45.83	Excinuclease ABC, C subunit, N-terminal	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 3..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	PANTHER	PTHR20208:SF10	STRUCTURE-SPECIFIC ENDONUCLEASE SUBUNIT SLX1	coord: 19..85
None	No IPR available	PANTHER	PTHR20208	STRUCTURE-SPECIFIC ENDONUCLEASE SUBUNIT SLX1	coord: 19..85
IPR000305	GIY-YIG endonuclease	PFAM	PF01541	GIY-YIG	coord: 41..82 e-value: 1.6E-5 score: 25.1
IPR000305	GIY-YIG endonuclease	PROSITE	PS50164	GIY_YIG	coord: 36..85 score: 13.341366
IPR035901	GIY-YIG endonuclease superfamily	GENE3D	3.40.1440.10		coord: 33..85 e-value: 1.3E-11 score: 46.2

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh01G007530	CmoCh01G007530	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G007530.1:exon:4862	CmoCh01G007530.1:exon:4862	exon
CmoCh01G007530.1:exon:4861	CmoCh01G007530.1:exon:4861	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G007530.1:cds	CmoCh01G007530.1:cds_2	CDS
CmoCh01G007530.1:cds	CmoCh01G007530.1:cds	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G007530.1:five_prime_utr	CmoCh01G007530.1:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh01G007530.1	CmoCh01G007530.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
cellular_component	GO:0033557	Slx1-Slx4 complex
molecular_function	GO:0017108	5'-flap endonuclease activity
molecular_function	GO:0008821	crossover junction endodeoxyribonuclease activity