CmoCh01G007340.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G007340.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr01: 3791838 .. 3794777 (-)
Sequence length	249
RNA-Seq Expression	CmoCh01G007340.1
Synteny	CmoCh01G007340.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAAATGGGACCGGAGAAGAATCAAAGGAGGAGAGAAGACATTGGAAATGGAGCAGTGGGCCGAAGGAAACTGGAAATCGGAAACGGCGAGAGAGAGAGAGACAGAGAGAGAAGAAGAAGGTGAGGAAATTGAGGAAGCTATTGGAAATTGAATTTGGTTCAACAAAATGAGAGGAAAAGTATTTTCTCACTTCGTTTTCTATATCAATACAAATAAATAAGGCCAAAACCACAAGTACCATCTTCTAAACCTATTTTCGTTCCACCCGACCATACCTAAACTCGACTCCTCTTCTTTCGAAAAATTATGTTATTGTGTAATTTGTTCAGTTGAACTTGTACTTTAAATCCGTTCAAAGGTGCAAGCTTTCATATCCATAAAACTCTCACAATTGAGATGCTGGTGGGGAGTTGTCCTAAACAATGTGAGAAATCTCGTCTCTTTGTTAGCTAAATGAGAACATAAATTGCCCGTCTTACCCCACCTTGCTTTCGTTTTTGTCGAGGAATGTGACATTTTGTTTCTTGAAATTTGAGCGAGATGGGGTCATTTCAATATAACACAAGGTTGCCTTAAGCCAAGCATGTTTAGCTTTAGAGTTCGTATGATTGAGCCACATTGTTGATAAAAGTAGTAACTTTTTTTAAGTCATTATCAATGGTCACATCCTCAGGATCACTCTCGTTCAAATGTTGTTTTGGTTCATTCATGTATCACTCATTTGTTCAGATGTCACAGTAATGATAAGTTTACATGTAATTCTATCTCGAAAGAAACATAAAACTAGATGTCACATGATTAGAGCTCGAGATATTGGTGGTAATTTGTTTGTTGATGGATGGAAGGGAATGGTATAAAGTTATATGTAAATTTGTGTTGAAAGTAAAGTGGAAGAGGAGGAATGGTCAAAGTTGGAAGTACACAAAAAATGAGAGTTGGTTGGAGAGAATCAAAGGGGGAGAGAAAATGAAAGGACAATTCAAAGGCAGATAAAGAGACATTCAAAAGGAAGGAAGGAAAGGAAGTTGTAATGTCTATGGGAATAAATAAGGAACCCATATCACTTTTTGGTGTTCTTTTTCAGACTACATCATCATTATATTATGCATTACCTTACCTTTTCCATTCAATCAATACAATAGCAAATTCATTAATTCAATTCACCAAAAAAAAAAAAATGTTCAATATAATTGTCTCATAATAACCCTCAAACGTGCTATCTAATGTGTAAAACGGTTCAAAAGACCGAAAAGAGAGAGTAATCTTATTTAAAAATTAGTGATAAAATACTTTTTTACCCCTAGTTAAGGGGTTATTGATTACTGAGTTTACTAGTAAAATTAGTGATAAATTACCTTTTTACCCCTAGTTAAGGGGTTAAGTAAAATTAGTGATAAATTGCCTTTTTATCCCTAGTTAAGGGGTTATTGATCACTGAATTTACAAGAGAATTTGCTCGGTGGACAATATAATACAATTATGATGAAGAGTCGTGATTTTTAATATATATTTAAAAAAAAATTAAGATAATGATAGTTAGATTATCTTTAATAGTAAAATAAAAGGAAAATATATTAAAATTAAACAAACGTGAAAGTAATAAATAATTATTAGGAATGGTCAGAAATGGGTCATATGTGACCATTTCTATGTTGAATTAAAGCAAAGGATAAATGGAAATTTGACCCAAAAAAACAAAAAAAAAAAGAAGAAAAGATATTTATTAAAATTAAATAATACCCATATTTAAGGGGCAGTTGGGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGTTTGGCATTATTGATTGGGGCACCCAAGAAAATGGCATTGGGATATGGTCAAAAGAACGACTTGTCGTTTTCAAACTGCACAGAACGACAGAAGAAAATGTGTGGCCAAAATAAACAAATCTGCTTAACTCAGAAGTTTCAACTTTCTAGGATTAAGACAAAGAAGAAGAAGAAGAAGAAGAAGAGATGAATTTACAATAATATATCATCAAACCTCAGTTCTCCCATGAACTTCATCAGCAGCTCAGTGTTTGGATAGTTCATTTCGTGAGGACACCAACAACTTGGGGAATGAGATGGTGA

mRNA sequence

ATGAAGAAAATGGGACCGGAGAAGAATCAAAGGAGGAGAGAAGACATTGGAAATGGAGCAGTGGGCCGAAGGAAACTGGAAATCGGAAACGGCGAGAGAGAGAGAGACAGAGAGAGAAGAAGAAGATGTCACATGATTAGAGCTCGAGATATTGGTGGTAATTTGTTTGTTGATGGATGGAAGGGAATGCTCAGTGTTTGGATAGTTCATTTCGTGAGGACACCAACAACTTGGGGAATGAGATGGTGA

Coding sequence (CDS)

ATGAAGAAAATGGGACCGGAGAAGAATCAAAGGAGGAGAGAAGACATTGGAAATGGAGCAGTGGGCCGAAGGAAACTGGAAATCGGAAACGGCGAGAGAGAGAGAGACAGAGAGAGAAGAAGAAGATGTCACATGATTAGAGCTCGAGATATTGGTGGTAATTTGTTTGTTGATGGATGGAAGGGAATGCTCAGTGTTTGGATAGTTCATTTCGTGAGGACACCAACAACTTGGGGAATGAGATGGTGA

Protein sequence

MKKMGPEKNQRRREDIGNGAVGRRKLEIGNGERERDRERRRRCHMIRARDIGGNLFVDGWKGMLSVWIVHFVRTPTTWGMRW

Homology

The following BLAST results are available for this feature:

BLAST of CmoCh01G007340.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh01G007340.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh01G007340.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh01G007340.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh01G007340	CmoCh01G007340	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G007340.1:exon:4447	CmoCh01G007340.1:exon:4447	exon
CmoCh01G007340.1:exon:4448	CmoCh01G007340.1:exon:4448	exon
CmoCh01G007340.1:exon:4449	CmoCh01G007340.1:exon:4449	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G007340.1:cds	CmoCh01G007340.1:cds_3	CDS
CmoCh01G007340.1:cds	CmoCh01G007340.1:cds_2	CDS
CmoCh01G007340.1:cds	CmoCh01G007340.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh01G007340.1	CmoCh01G007340.1-protein	polypeptide