CmoCh01G003030.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G003030.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	rRNA adenine N(6)-methyltransferase
Location	Cmo_Chr01: 1442209 .. 1444761 (-)
Sequence length	483
RNA-Seq Expression	CmoCh01G003030.1
Synteny	CmoCh01G003030.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTGTCTTCGAGAATTTTCTTCGACACAGGTTGACTAAGACTTATATTTGCCTAATAATATATATTTAGCATTTTTCGTGTTTTTTGGAATATTAAACGTTTAATTTTAAAATTGTTATTATTACTTTTTTTTTTTTGTGTGTGTGTGTGTGTGTGTGTTAATTACCCAATTAGGGTTTCGTTCGAGTGCGAGCGTAGCTTCCTGTCTCTCCCGCCAATTGTTTCAATTTCCCTTTGTCTCTCTCTCGAAGAAGAAGAAGAAGAGGAAGAAGAAGAGGAAGAAGAAGAGGAAGAAGAAGAAGAAGAGGAGGAGAAAGAGCAGTACTGCAGCGGAGTTCCGTAGATTTGCAATCTACAGGTACGTTCAAATTTGAGATGAATCATTTCATCGATAGATATGAGTTGCTGAATTTACAAGGTCCTATTCGAAATGGTCATTTATGTTTGAATCTTTTAATGGATTTTAACTTCTTTAGTAGAACCTGATTTTGGAGCCCTAAATTAGGATTCTGGAAAGGTAAATGGTGGTGTAGTTTGGGAATTGAAGTTCGAAGATTGGAATTTGCAAATAGATGGTTCTGGATTCACTTTTTATACCTGTTTTCTAGGAGCGCTTTTAAAATTTGATGAATATATGTTTGGATAACTGGTACTTTTTCTTATTTTCTTTGGGTTCGTTTCTGTTGATGGCTGATTGGCTAGAACTGAAGTTGTTCTTCTTACCAATCGTATAGGACCGTGAGCAGTAGTTTTTACTGTCCCGATCAAAACTAGATTTGAAAACTAAAACTTGGGACTTGTTTTGAGAACAGTTTCGGTATAACAAGCCCTTAGCCTTCCATTGGCCACTTCGAGCTTCTAATATAGGAGGCCAGGAATGCTGACCTTGGCCTATGACTTATCTTTGTGTTCAATTTTCTTCGACATTTATCCAGCTCTTGGAGTATGAAGGACTTAACTTATTGTCCCATTCGATTCTCGTGCTGAGTTATTACTAGTTTGGATTTCTTTTATGTTGAGTCGAGTGAAATTCTCGGGTGTAGACCATATGAGTTTTGAGTTTAAGGATGGGATGGCGTTGATAGAACCTGAAATATATGGAAGTATGAAAGATACCGAAACTACAAGATAAACCATGTACTTCGAGGTACTTGAACGGGGAAGTAGAGTAATCAAGGAAGTGCACAAGGGAAAGAGGGAAGATTTCAGGAAACTCTGCTTGGCAACCAGAGTGGAAGGCAAAGCGGCGAGCTTTGTTTCTACGACTACCTCCCAGCCGTTGGGTCTAACCAACCTCTAGCTGATAGTAGTCAGTTGCAATCGGATCTATTTATTAAAAGGAATCAATTCAATACTCCTTATTTTGTTTCGGTTGAGGTGGAACTCTTCCCAACTTCTATCGAGTACCCAATTCCTATTCCTTCAATCTCTCAGTGTGGTCAGTACTCCATATTGTTGGGCAGCGAAGCTCCTAAATCAATTCCAAGCCTTTTCTTCCACCTCTCCTTATAATCAAAACTTGTTCAAACATGACTACACTCGTGTTGTGTAGTGTAGCAAGACTAACAAGTGGAACCTTGAGATCACTCAAGCCCTAAGTGAGATGAACTATTGCTTAACTTTCTCGTTTCCCACTCCCTCTATTTATAACCAAATGCATACCGAACTCCCTAACAAATTAGCAGTATACTCTTAATACTCTAAATATATTCCTAATAACATGCCTATCAGACATTTTCTGATTTATCCCATCCATGTAAATAACATGGGACTTTGATTTGTTAACAGAAAGAAGAAAAGCCATTCAGCTTCTGGCCTGAAAAGTTTATTCTCATTATCAGCTTCCCTTCTTTCAATATCACAACACATATGAATACCGAAGCTAGCTATCGAAGTTTCCCTCTGAGTGTAAAACAGAACTCAAATTGCCTACCAAAGTGACCCTCTGAGTGTAAGTTATGATTTATTTGATGCTTGAAATGTTTAGGATGATTGCTAAAGTGGCAGTAGGTGTGGTTATCAGTAAGATCCGTAACTGGCTTGCTAGAATCGTAGTTTTCAGCAGGCAGAAAAAGAACCATGCTAATTTCTTTTATCGTTTGAATTCTATTTTAATGGCAAGAATGTGCATCTACACATTAGGCTACTCAGAGTTGTAACTAAACATGTAGTGAAAGACCCTGTAAATTTCAACTATCCAATCGTGCTTGTTTTTACCTCAATCTCAGTTCAGTGTTTTCTTACATTAACCTTTGCCAGATTCAATGGATGCCCAAGCTCAAGAAGTTATTTCTCGAAGTCCTCGAGTTAAGGCCTCATTTCGCTTAGGGTCAGAGAAACATTTGGTCAATACAGCTAATAAAGGCACTCTCTCAGAGCAGTTGATTTCTATGAAAGAGGAGAGCATGGCCATTTTGAAGGAGTACATAACGAAACATAATGTTCCTAACGATGTCCCAGATGAACTTCTCGAAGAGGCTTCTGAGGACGATGATGATGAAACCACTGAAAAGCCTCAAGTGAAGTCAAAGAAGACCAAATTAACATAA

mRNA sequence

ATGTTCTGTCTTCGAGAATTTTCTTCGACACAGCTTCCTGTCTCTCCCGCCAATTGTTTCAATTTCCCTTTGTCTCTCTCTCGAAGAAGAAGAAGAAGAGGAAGAAGAAGAGGAAGAAGAAGAGGAAGAAGAAGAAGAAGAGGAGGAGAAAGAGCAGTACTGCAGCGGAGTTCCGTAGATTTGCAATCTACAGATTCAATGGATGCCCAAGCTCAAGAAGTTATTTCTCGAAGTCCTCGAGTTAAGGCCTCATTTCGCTTAGGGTCAGAGAAACATTTGGTCAATACAGCTAATAAAGGCACTCTCTCAGAGCAGTTGATTTCTATGAAAGAGGAGAGCATGGCCATTTTGAAGGAGTACATAACGAAACATAATGTTCCTAACGATGTCCCAGATGAACTTCTCGAAGAGGCTTCTGAGGACGATGATGATGAAACCACTGAAAAGCCTCAAGTGAAGTCAAAGAAGACCAAATTAACATAA

Coding sequence (CDS)

ATGTTCTGTCTTCGAGAATTTTCTTCGACACAGCTTCCTGTCTCTCCCGCCAATTGTTTCAATTTCCCTTTGTCTCTCTCTCGAAGAAGAAGAAGAAGAGGAAGAAGAAGAGGAAGAAGAAGAGGAAGAAGAAGAAGAAGAGGAGGAGAAAGAGCAGTACTGCAGCGGAGTTCCGTAGATTTGCAATCTACAGATTCAATGGATGCCCAAGCTCAAGAAGTTATTTCTCGAAGTCCTCGAGTTAAGGCCTCATTTCGCTTAGGGTCAGAGAAACATTTGGTCAATACAGCTAATAAAGGCACTCTCTCAGAGCAGTTGATTTCTATGAAAGAGGAGAGCATGGCCATTTTGAAGGAGTACATAACGAAACATAATGTTCCTAACGATGTCCCAGATGAACTTCTCGAAGAGGCTTCTGAGGACGATGATGATGAAACCACTGAAAAGCCTCAAGTGAAGTCAAAGAAGACCAAATTAACATAA

Protein sequence

MFCLREFSSTQLPVSPANCFNFPLSLSRRRRRRGRRRGRRRGRRRRRGGERAVLQRSSVDLQSTDSMDAQAQEVISRSPRVKASFRLGSEKHLVNTANKGTLSEQLISMKEESMAILKEYITKHNVPNDVPDELLEEASEDDDDETTEKPQVKSKKTKLT

Homology

[Close]

BLAST of CmoCh01G003030.1 vs. ExPASy TrEMBL
Match: A0A6J1G9M3 (uncharacterized protein LOC111452065 OS=Cucurbita moschata OX=3662 GN=LOC111452065 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 3.6e-40
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 67  MDAQAQEVISRSPRVKASFRLGSEKHLVNTANKGTLSEQLISMKEESMAILKEYITKHNV 126
           MDAQAQEVISRSPRVKASFRLGSEKHLVNTANKGTLSEQLISMKEESMAILKEYITKHNV
Sbjct: 1   MDAQAQEVISRSPRVKASFRLGSEKHLVNTANKGTLSEQLISMKEESMAILKEYITKHNV 60

Query: 127 PNDVPDELLEEASEDDDDETTEKPQVKSKKTKLT 161
           PNDVPDELLEEASEDDDDETTEKPQVKSKKTKLT
Sbjct: 61  PNDVPDELLEEASEDDDDETTEKPQVKSKKTKLT 94

[Close]

BLAST of CmoCh01G003030.1 vs. ExPASy TrEMBL
Match: A0A5A7SX16 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G002390 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 4.0e-31
Identity = 81/96 (84.38%), Postives = 86/96 (89.58%), Query Frame = 0


Query: 65  DSMDAQAQEVISRSPRVKASFRLGSEKHLVNTANKGTLSEQLISMKEESMAILKEYITKH 124
           DSMDA A+E I   PRVK SF LGSE HLVNTANKGTLSEQLISMKE+SMAILKEYITKH
Sbjct: 17  DSMDAPAEEDIPLRPRVKVSFCLGSEIHLVNTANKGTLSEQLISMKEDSMAILKEYITKH 76

Query: 125 NVPNDVPDELLEEASEDDDDETTEKPQVKSKKTKLT 161
           NVPNDVPDEL+EEASE DDDE TEKPQVK+KKTK+T
Sbjct: 77  NVPNDVPDELVEEASE-DDDEITEKPQVKAKKTKVT 111

[Close]

BLAST of CmoCh01G003030.1 vs. ExPASy TrEMBL
Match: A0A1S3B8U1 (uncharacterized protein LOC103487289 OS=Cucumis melo OX=3656 GN=LOC103487289 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 4.0e-31
Identity = 81/96 (84.38%), Postives = 86/96 (89.58%), Query Frame = 0


Query: 65  DSMDAQAQEVISRSPRVKASFRLGSEKHLVNTANKGTLSEQLISMKEESMAILKEYITKH 124
           DSMDA A+E I   PRVK SF LGSE HLVNTANKGTLSEQLISMKE+SMAILKEYITKH
Sbjct: 5   DSMDAPAEEDIPLRPRVKVSFCLGSEIHLVNTANKGTLSEQLISMKEDSMAILKEYITKH 64

Query: 125 NVPNDVPDELLEEASEDDDDETTEKPQVKSKKTKLT 161
           NVPNDVPDEL+EEASE DDDE TEKPQVK+KKTK+T
Sbjct: 65  NVPNDVPDELVEEASE-DDDEITEKPQVKAKKTKVT 99

[Close]

BLAST of CmoCh01G003030.1 vs. ExPASy TrEMBL
Match: A0A5D3DZN8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1228G00090 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 5.8e-30
Identity = 79/94 (84.04%), Postives = 84/94 (89.36%), Query Frame = 0


Query: 67  MDAQAQEVISRSPRVKASFRLGSEKHLVNTANKGTLSEQLISMKEESMAILKEYITKHNV 126
           MDA A+E I   PRVK SF LGSE HLVNTANKGTLSEQLISMKE+SMAILKEYITKHNV
Sbjct: 1   MDAPAEEDIPLRPRVKVSFCLGSEIHLVNTANKGTLSEQLISMKEDSMAILKEYITKHNV 60

Query: 127 PNDVPDELLEEASEDDDDETTEKPQVKSKKTKLT 161
           PNDVPDEL+EEASE DDDE TEKPQVK+KKTK+T
Sbjct: 61  PNDVPDELVEEASE-DDDEITEKPQVKAKKTKVT 93

[Close]

BLAST of CmoCh01G003030.1 vs. ExPASy TrEMBL
Match: A0A0A0M0V3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G679550 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 6.4e-29
Identity = 77/94 (81.91%), Postives = 82/94 (87.23%), Query Frame = 0


Query: 67  MDAQAQEVISRSPRVKASFRLGSEKHLVNTANKGTLSEQLISMKEESMAILKEYITKHNV 126
           MDA A+E I   PRVK S  LGSE HLVNTANKGTLSEQL SMKE+SMAILKEYITKHNV
Sbjct: 1   MDAPAEEDIPLRPRVKVSLCLGSETHLVNTANKGTLSEQLTSMKEDSMAILKEYITKHNV 60

Query: 127 PNDVPDELLEEASEDDDDETTEKPQVKSKKTKLT 161
           PNDVPDEL+EEASE DDDE TEKPQVK+KKTK+T
Sbjct: 61  PNDVPDELVEEASE-DDDEITEKPQVKAKKTKVT 93

[Close]

BLAST of CmoCh01G003030.1 vs. NCBI nr
Match: KAG6606942.1 (putative E3 ubiquitin ligase SUD1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 208.0 bits (528), Expect = 6.1e-50
Identity = 121/126 (96.03%), Postives = 122/126 (96.83%), Query Frame = 0


Query: 36  RRGRRRGRRRR-RGGERAVLQRSSVDLQSTDSMDAQAQEVISRSPRVKASFRLGSEKHLV 95
           RRGRRR RRRR  GGER+VLQRSSVDLQS DSMDAQAQEVISRSPRVKASFRLGSEKHLV
Sbjct: 219 RRGRRRRRRRRGGGGERSVLQRSSVDLQSIDSMDAQAQEVISRSPRVKASFRLGSEKHLV 278

Query: 96  NTANKGTLSEQLISMKEESMAILKEYITKHNVPNDVPDELLEEASEDDDDETTEKPQVKS 155
           NTANKGTLSEQLISMKEESMAILKEYITKHNVPNDVPDELLEEASEDDDDETTEKPQVKS
Sbjct: 279 NTANKGTLSEQLISMKEESMAILKEYITKHNVPNDVPDELLEEASEDDDDETTEKPQVKS 338

Query: 156 KKTKLT 161
           KKTKLT
Sbjct: 339 KKTKLT 344

[Close]

BLAST of CmoCh01G003030.1 vs. NCBI nr
Match: KAG7036645.1 (hypothetical protein SDJN02_00265, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 178.3 bits (451), Expect = 5.2e-41
Identity = 96/100 (96.00%), Postives = 97/100 (97.00%), Query Frame = 0


Query: 61  LQSTDSMDAQAQEVISRSPRVKASFRLGSEKHLVNTANKGTLSEQLISMKEESMAILKEY 120
           +   DSMDAQAQEVISRSPRVKASFRLGSEKHLVNTANKGTLSEQLISMKEESMAILKEY
Sbjct: 98  ISQCDSMDAQAQEVISRSPRVKASFRLGSEKHLVNTANKGTLSEQLISMKEESMAILKEY 157

Query: 121 ITKHNVPNDVPDELLEEASEDDDDETTEKPQVKSKKTKLT 161
           ITKHNVPNDVPDELLEEASEDDDDETTEKPQVKSKKTKLT
Sbjct: 158 ITKHNVPNDVPDELLEEASEDDDDETTEKPQVKSKKTKLT 197

[Close]

BLAST of CmoCh01G003030.1 vs. NCBI nr
Match: XP_022948365.1 (uncharacterized protein LOC111452065 [Cucurbita moschata])

HSP 1 Score: 174.5 bits (441), Expect = 7.4e-40
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 67  MDAQAQEVISRSPRVKASFRLGSEKHLVNTANKGTLSEQLISMKEESMAILKEYITKHNV 126
           MDAQAQEVISRSPRVKASFRLGSEKHLVNTANKGTLSEQLISMKEESMAILKEYITKHNV
Sbjct: 1   MDAQAQEVISRSPRVKASFRLGSEKHLVNTANKGTLSEQLISMKEESMAILKEYITKHNV 60

Query: 127 PNDVPDELLEEASEDDDDETTEKPQVKSKKTKLT 161
           PNDVPDELLEEASEDDDDETTEKPQVKSKKTKLT
Sbjct: 61  PNDVPDELLEEASEDDDDETTEKPQVKSKKTKLT 94

[Close]

BLAST of CmoCh01G003030.1 vs. NCBI nr
Match: XP_023523488.1 (uncharacterized protein LOC111787690 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 173.3 bits (438), Expect = 1.7e-39
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 67  MDAQAQEVISRSPRVKASFRLGSEKHLVNTANKGTLSEQLISMKEESMAILKEYITKHNV 126
           MDAQAQEVISRSPRVKASFRLG+EKHLVNTANKGTLSEQLISMKEESMAILKEYITKHNV
Sbjct: 1   MDAQAQEVISRSPRVKASFRLGTEKHLVNTANKGTLSEQLISMKEESMAILKEYITKHNV 60

Query: 127 PNDVPDELLEEASEDDDDETTEKPQVKSKKTKLT 161
           PNDVPDELLEEASEDDDDETTEKPQVKSKKTKLT
Sbjct: 61  PNDVPDELLEEASEDDDDETTEKPQVKSKKTKLT 94

[Close]

BLAST of CmoCh01G003030.1 vs. NCBI nr
Match: XP_008443784.1 (PREDICTED: uncharacterized protein LOC103487289 [Cucumis melo])

HSP 1 Score: 144.4 bits (363), Expect = 8.2e-31
Identity = 81/96 (84.38%), Postives = 86/96 (89.58%), Query Frame = 0


Query: 65  DSMDAQAQEVISRSPRVKASFRLGSEKHLVNTANKGTLSEQLISMKEESMAILKEYITKH 124
           DSMDA A+E I   PRVK SF LGSE HLVNTANKGTLSEQLISMKE+SMAILKEYITKH
Sbjct: 5   DSMDAPAEEDIPLRPRVKVSFCLGSEIHLVNTANKGTLSEQLISMKEDSMAILKEYITKH 64

Query: 125 NVPNDVPDELLEEASEDDDDETTEKPQVKSKKTKLT 161
           NVPNDVPDEL+EEASE DDDE TEKPQVK+KKTK+T
Sbjct: 65  NVPNDVPDELVEEASE-DDDEITEKPQVKAKKTKVT 99

[Close]

BLAST of CmoCh01G003030.1 vs. TAIR 10
Match: AT1G47820.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47813.1); Has 29 Blast hits to 29 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 69.7 bits (169), Expect = 2.4e-12
Identity = 41/96 (42.71%), Postives = 63/96 (65.62%), Query Frame = 0


Query: 67  MDAQAQEVISRSPRVKASFRLGSEKHLVNTANKGTLSEQLISMKEESMAILKEYITKHNV 126
           M+ ++   +     VK  F+LG+E + +++    T+ +QL+SMKEESM ILK++ITKHNV
Sbjct: 1   MEIESHVSVPGKNLVKVEFKLGTESYTIDSIKGDTVLDQLVSMKEESMKILKDFITKHNV 60

Query: 127 P-NDVPDELLEEASEDDDDETTEK--PQVKSKKTKL 160
           P +DVPD++L +  E DDD+ +    P    KKTK+
Sbjct: 61  PDDDVPDQILSDDEEGDDDDASPVICPVKPPKKTKI 96

[Close]

BLAST of CmoCh01G003030.1 vs. TAIR 10
Match: AT1G47820.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47813.1); Has 29 Blast hits to 29 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 69.7 bits (169), Expect = 2.4e-12
Identity = 41/96 (42.71%), Postives = 63/96 (65.62%), Query Frame = 0


Query: 67  MDAQAQEVISRSPRVKASFRLGSEKHLVNTANKGTLSEQLISMKEESMAILKEYITKHNV 126
           M+ ++   +     VK  F+LG+E + +++    T+ +QL+SMKEESM ILK++ITKHNV
Sbjct: 1   MEIESHVSVPGKNLVKVEFKLGTESYTIDSIKGDTVLDQLVSMKEESMKILKDFITKHNV 60

Query: 127 P-NDVPDELLEEASEDDDDETTEK--PQVKSKKTKL 160
           P +DVPD++L +  E DDD+ +    P    KKTK+
Sbjct: 61  PDDDVPDQILSDDEEGDDDDASPVICPVKPPKKTKI 96

The following BLAST results are available for this feature:

BLAST of CmoCh01G003030.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh01G003030.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G9M3	3.6e-40	100.00	uncharacterized protein LOC111452065 OS=Cucurbita moschata OX=3662 GN=LOC1114520...	[more]
A0A5A7SX16	4.0e-31	84.38	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3B8U1	4.0e-31	84.38	uncharacterized protein LOC103487289 OS=Cucumis melo OX=3656 GN=LOC103487289 PE=...	[more]
A0A5D3DZN8	5.8e-30	84.04	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0M0V3	6.4e-29	81.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G679550 PE=4 SV=1	[more]

BLAST of CmoCh01G003030.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6606942.1	6.1e-50	96.03	putative E3 ubiquitin ligase SUD1, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7036645.1	5.2e-41	96.00	hypothetical protein SDJN02_00265, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022948365.1	7.4e-40	100.00	uncharacterized protein LOC111452065 [Cucurbita moschata]	[more]
XP_023523488.1	1.7e-39	98.94	uncharacterized protein LOC111787690 [Cucurbita pepo subsp. pepo]	[more]
XP_008443784.1	8.2e-31	84.38	PREDICTED: uncharacterized protein LOC103487289 [Cucumis melo]	[more]

BLAST of CmoCh01G003030.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G47820.1	2.4e-12	42.71	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G47820.2	2.4e-12	42.71	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 146..160
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 124..160
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..50
None	No IPR available	PANTHER	PTHR37194	T2E6.7-RELATED	coord: 67..158

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh01G003030	CmoCh01G003030	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G003030.1:exon:2193	CmoCh01G003030.1:exon:2193	exon
CmoCh01G003030.1:exon:2192	CmoCh01G003030.1:exon:2192	exon
CmoCh01G003030.1:exon:2191	CmoCh01G003030.1:exon:2191	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G003030.1:cds	CmoCh01G003030.1:cds_3	CDS
CmoCh01G003030.1:cds	CmoCh01G003030.1:cds_2	CDS
CmoCh01G003030.1:cds	CmoCh01G003030.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh01G003030.1	CmoCh01G003030.1-protein	polypeptide