CmoCh01G002610.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G002610.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	ATP-dependent Clp protease proteolytic subunit
Location	Cmo_Chr01: 1182567 .. 1184257 (-)
Sequence length	1144
RNA-Seq Expression	CmoCh01G002610.1
Synteny	CmoCh01G002610.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGAGGGGAAGAGAAGGGAGACGAAGCTCTCAAATCTGGAGGCTGAAGTTTGAAGCTGATAAACCCTCGATTACGATCTCAACGATCGAGTCAATTGGCCATGATTTGGAGGAGATTAGCTTCGACTTCCTCCATGCTGCTAGCTAAATCCACGGCGTTGGCGAACGGAAGAACGGCGGCGAGGGATTTTCGTCGCGGTTACAGCTTGATTCCGATGGTGATAGAACACACATCGAGGGGAGAAAGGGCATACGATATCTTCTCTCGTCTTCTTAAGGAGCGTATAATTTGCATCAATGGCCCTATTTCAGATGATACTGCTCATGTCGTCGTTGCTCAACTCCTTTTTCTCGAGTCGGAGAACCCCTCGAAGCCCATCAACATGTACCTCAACTCCCCCGGCGGCGCCGTCACTGCCGGTATAATAGAAAGCTACACTTACTAATTCAGGATTTTCATTGTTTTGTGCATTATCATGACTTAATACCAGTTTTTTAACTCCTCGTTTCTGACTTTGAGAATCTCGTTTAGAGTATGAACAAATAATTAAATTGGGTAAATGGGTGATTTAACATAATATAAAGTGGGAGATTATCATTAAATATACGGTATTCTATAGGTTTAATCTTTTGAGTTTTGGATTTTTGGTCTTGTTCTAGTTACACATGCACATATAGTACTTTTAATTCGTATTATTTTCTCCCAATTTGAGGTTTGTTGACAAGAAAACGAAAGGATTTCAAACTATTTCAGTTCACTGATTATGAAACTTGGCTAATCTCACATTGGAAGTCTACTTCCCTTCCCCTCATAATGTTAATTTTCACTGTCTGTTACCTCAGTAGACTTCAATTGTCATTTGTGTTCAAAGATTATAATCATGAACTTCGTTCCAAGGGCCAACCTTTCCTGCTTGGAAGATTCGAGGTTGCTGAATTTGATAGAATATTTGTGATGTATTTACAGGGCTAGCTATATATGATACTATGCAGTATATAAGGTCGCCCATCAATACCATCTGTTTGGGTCAGGCTGCTTCAATGGCTTCTCTTCTTCTAGCTGCTGGTGCCAAGGGTGAGAGACGATCGCTTCCTAATGCAACTATCATGATTCACCAGCCTTCTGGTGGATACAGTGGGCAAGCAAAGGACATAACGATTCACACGAAACAGATCGTTCGGGTTTGGGATGCACTTAACGAGCTGTACTCCAAGCATACGTCACAACCAATAGATACTATCAAAGAGTATATGGATAGGGATTATTTCATGACCCCAGAAGAGGCCAAAGAGTTTGGCATTATCGACGAGGTAATGGATCAAAGGCCAATAGCTCTGGTGACTGATGCAGTTGGTTCTCAAGGCAAGGATAAAGGTTCAAATTAAGAATGCGAGGTAGGATTATGACGCAAAAGCGTGGCATTTCAAAGTTCCATACTGACTTTTGTTAGAATTCTCTAAAAGCTGATCATATCTACCTAGATGTGATGGAATTGATTGTTTTTTTCTTAGCTAAATGTTGATTTAGCTGTTTGGATCAGTATTGTTATTAGCATTTCAAAGAGAAAAGCTTGAAATTTAATAGAATTTCAAATTTTGCTCGTATGACAACAAATGTCTATACTTTATCCATATTATGTTTGCTTCTTCTAGTTCAATTCTACACAATATCATGCTTCAGGTGTATCACAG

mRNA sequence

GAGAGGGGAAGAGAAGGGAGACGAAGCTCTCAAATCTGGAGGCTGAAGTTTGAAGCTGATAAACCCTCGATTACGATCTCAACGATCGAGTCAATTGGCCATGATTTGGAGGAGATTAGCTTCGACTTCCTCCATGCTGCTAGCTAAATCCACGGCGTTGGCGAACGGAAGAACGGCGGCGAGGGATTTTCGTCGCGGTTACAGCTTGATTCCGATGGTGATAGAACACACATCGAGGGGAGAAAGGGCATACGATATCTTCTCTCGTCTTCTTAAGGAGCGTATAATTTGCATCAATGGCCCTATTTCAGATGATACTGCTCATGTCGTCGTTGCTCAACTCCTTTTTCTCGAGTCGGAGAACCCCTCGAAGCCCATCAACATGTACCTCAACTCCCCCGGCGGCGCCGTCACTGCCGGGCTAGCTATATATGATACTATGCAGTATATAAGGTCGCCCATCAATACCATCTGTTTGGGTCAGGCTGCTTCAATGGCTTCTCTTCTTCTAGCTGCTGGTGCCAAGGGTGAGAGACGATCGCTTCCTAATGCAACTATCATGATTCACCAGCCTTCTGGTGGATACAGTGGGCAAGCAAAGGACATAACGATTCACACGAAACAGATCGTTCGGGTTTGGGATGCACTTAACGAGCTGTACTCCAAGCATACGTCACAACCAATAGATACTATCAAAGAGTATATGGATAGGGATTATTTCATGACCCCAGAAGAGGCCAAAGAGTTTGGCATTATCGACGAGGTAATGGATCAAAGGCCAATAGCTCTGGTGACTGATGCAGTTGGTTCTCAAGGCAAGGATAAAGGTTCAAATTAAGAATGCGAGGTAGGATTATGACGCAAAAGCGTGGCATTTCAAAGTTCCATACTGACTTTTGTTAGAATTCTCTAAAAGCTGATCATATCTACCTAGATGTGATGGAATTGATTGTTTTTTTCTTAGCTAAATGTTGATTTAGCTGTTTGGATCAGTATTGTTATTAGCATTTCAAAGAGAAAAGCTTGAAATTTAATAGAATTTCAAATTTTGCTCGTATGACAACAAATGTCTATACTTTATCCATATTATGTTTGCTTCTTCTAGTTCAATTCTACACAATATCATGCTTCAGGTGTATCACAG

Coding sequence (CDS)

ATGATTTGGAGGAGATTAGCTTCGACTTCCTCCATGCTGCTAGCTAAATCCACGGCGTTGGCGAACGGAAGAACGGCGGCGAGGGATTTTCGTCGCGGTTACAGCTTGATTCCGATGGTGATAGAACACACATCGAGGGGAGAAAGGGCATACGATATCTTCTCTCGTCTTCTTAAGGAGCGTATAATTTGCATCAATGGCCCTATTTCAGATGATACTGCTCATGTCGTCGTTGCTCAACTCCTTTTTCTCGAGTCGGAGAACCCCTCGAAGCCCATCAACATGTACCTCAACTCCCCCGGCGGCGCCGTCACTGCCGGGCTAGCTATATATGATACTATGCAGTATATAAGGTCGCCCATCAATACCATCTGTTTGGGTCAGGCTGCTTCAATGGCTTCTCTTCTTCTAGCTGCTGGTGCCAAGGGTGAGAGACGATCGCTTCCTAATGCAACTATCATGATTCACCAGCCTTCTGGTGGATACAGTGGGCAAGCAAAGGACATAACGATTCACACGAAACAGATCGTTCGGGTTTGGGATGCACTTAACGAGCTGTACTCCAAGCATACGTCACAACCAATAGATACTATCAAAGAGTATATGGATAGGGATTATTTCATGACCCCAGAAGAGGCCAAAGAGTTTGGCATTATCGACGAGGTAATGGATCAAAGGCCAATAGCTCTGGTGACTGATGCAGTTGGTTCTCAAGGCAAGGATAAAGGTTCAAATTAA

Protein sequence

MIWRRLASTSSMLLAKSTALANGRTAARDFRRGYSLIPMVIEHTSRGERAYDIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIYDTMQYIRSPINTICLGQAASMASLLLAAGAKGERRSLPNATIMIHQPSGGYSGQAKDITIHTKQIVRVWDALNELYSKHTSQPIDTIKEYMDRDYFMTPEEAKEFGIIDEVMDQRPIALVTDAVGSQGKDKGSN

Homology

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BLAST of CmoCh01G002610.1 vs. ExPASy Swiss-Prot
Match: Q9FN42 (ATP-dependent Clp protease proteolytic subunit 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=CLPP2 PE=1 SV=1)

HSP 1 Score: 382.5 bits (981), Expect = 3.6e-105
Identity = 192/242 (79.34%), Postives = 215/242 (88.84%), Query Frame = 0


Query: 4   RRLASTSSMLLAKSTALANGRTAARDFRRGYSLIPMVIEHTSRGERAYDIFSRLLKERII 63
           R L S + ML +  +++A   T+    RR YSLIPMVIEH+SRGERAYDIFSRLLKERII
Sbjct: 3   RGLVSGAKMLSSTPSSMA---TSIATGRRSYSLIPMVIEHSSRGERAYDIFSRLLKERII 62

Query: 64  CINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIYDTMQYIRSPINT 123
           CINGPI+DDT+HVVVAQLL+LESENPSKPI+MYLNSPGG VTAGLAIYDTMQYIRSPI+T
Sbjct: 63  CINGPINDDTSHVVVAQLLYLESENPSKPIHMYLNSPGGHVTAGLAIYDTMQYIRSPIST 122

Query: 124 ICLGQAASMASLLLAAGAKGERRSLPNATIMIHQPSGGYSGQAKDITIHTKQIVRVWDAL 183
           ICLGQAASMASLLLAAGAKG+RRSLPNAT+MIHQPSGGYSGQAKDITIHTKQIVRVWDAL
Sbjct: 123 ICLGQAASMASLLLAAGAKGQRRSLPNATVMIHQPSGGYSGQAKDITIHTKQIVRVWDAL 182

Query: 184 NELYSKHTSQPIDTIKEYMDRDYFMTPEEAKEFGIIDEVMDQRPIALVTDAVGSQGKDKG 243
           NELY KHT QP+D +   MDRD+FMTPEEAK FGIIDEV+D+RP+ LV DAVG++ KDK 
Sbjct: 183 NELYVKHTGQPLDVVANNMDRDHFMTPEEAKAFGIIDEVIDERPLELVKDAVGNESKDKS 241

Query: 244 SN 246
           S+
Sbjct: 243 SS 241

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BLAST of CmoCh01G002610.1 vs. ExPASy Swiss-Prot
Match: A5D447 (ATP-dependent Clp protease proteolytic subunit OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) OX=370438 GN=clpP PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 7.6e-71
Identity = 127/192 (66.15%), Postives = 160/192 (83.33%), Query Frame = 0


Query: 35  SLIPMVIEHTSRGERAYDIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPIN 94
           +L+P+V+E T+RGERAYDI+SRLLK+RII + GPI D+TA++++AQ+LFLE+E+P K I 
Sbjct: 2   NLVPIVVEQTNRGERAYDIYSRLLKDRIIFLGGPIDDNTANLIIAQMLFLEAEDPEKDIQ 61

Query: 95  MYLNSPGGAVTAGLAIYDTMQYIRSPINTICLGQAASMASLLLAAGAKGERRSLPNATIM 154
            Y+NSPGG VTAG+AIYDTMQY+RSP+ TIC+GQAASMASLLLAAGAKG+R SLP A I+
Sbjct: 62  FYINSPGGVVTAGMAIYDTMQYVRSPVATICIGQAASMASLLLAAGAKGKRYSLPYARIL 121

Query: 155 IHQPSGGYSGQAKDITIHTKQIVRVWDALNELYSKHTSQPIDTIKEYMDRDYFMTPEEAK 214
           IHQP GG  GQA DI IH K+I+R+   LNE+ S+HT QPI+ I    +RDYFM+ +EAK
Sbjct: 122 IHQPLGGVQGQATDIEIHAKEILRMRQFLNEILSRHTGQPIEKIARDTERDYFMSAQEAK 181

Query: 215 EFGIIDEVMDQR 227
           E+GIIDEV D R
Sbjct: 182 EYGIIDEVYDVR 193

[Close]

BLAST of CmoCh01G002610.1 vs. ExPASy Swiss-Prot
Match: Q6G3Z3 (ATP-dependent Clp protease proteolytic subunit OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 / Houston 1) OX=283166 GN=clpP PE=3 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 1.7e-70
Identity = 125/192 (65.10%), Postives = 157/192 (81.77%), Query Frame = 0


Query: 35  SLIPMVIEHTSRGERAYDIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPIN 94
           SL+PMVIE T+RGERAYDIFSRLLKERII INGP+ D  A +V AQLLFLE+ENP K I+
Sbjct: 10  SLVPMVIEQTNRGERAYDIFSRLLKERIIFINGPVEDGMAMLVCAQLLFLEAENPKKEIS 69

Query: 95  MYLNSPGGAVTAGLAIYDTMQYIRSPINTICLGQAASMASLLLAAGAKGERRSLPNATIM 154
           +Y+NSPGG VT+G+AIYDTMQ+IR P++T+C+GQAASM SLLL AGAKG R +LPNA IM
Sbjct: 70  LYINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGAKGHRFTLPNARIM 129

Query: 155 IHQPSGGYSGQAKDITIHTKQIVRVWDALNELYSKHTSQPIDTIKEYMDRDYFMTPEEAK 214
           +HQPSGG+ GQA DI  H + I+++   LNE+Y +HT Q  D I+  +DRD+FMT EEAK
Sbjct: 130 VHQPSGGFQGQASDIERHAQDIIKMKQRLNEIYVQHTGQNYDVIERTLDRDHFMTAEEAK 189

Query: 215 EFGIIDEVMDQR 227
           +FG++D+V+  R
Sbjct: 190 QFGLVDDVIQYR 201

[Close]

BLAST of CmoCh01G002610.1 vs. ExPASy Swiss-Prot
Match: A1USA7 (ATP-dependent Clp protease proteolytic subunit OS=Bartonella bacilliformis (strain ATCC 35685 / NCTC 12138 / KC583) OX=360095 GN=clpP PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 3.8e-70
Identity = 127/192 (66.15%), Postives = 156/192 (81.25%), Query Frame = 0


Query: 35  SLIPMVIEHTSRGERAYDIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPIN 94
           SL+PMV+E T+RGERAYDIFSRLLKERII INGP+ D  A +V AQLLFLE+ENP K I+
Sbjct: 10  SLVPMVVEQTNRGERAYDIFSRLLKERIIFINGPVEDSMAMLVCAQLLFLEAENPKKEIS 69

Query: 95  MYLNSPGGAVTAGLAIYDTMQYIRSPINTICLGQAASMASLLLAAGAKGERRSLPNATIM 154
           +Y+NSPGG VT+G+AIYDTMQ+IR PI+T+C+GQAASM SLLL AGAKG R SLPNA IM
Sbjct: 70  LYINSPGGVVTSGMAIYDTMQFIRPPISTLCMGQAASMGSLLLTAGAKGHRFSLPNARIM 129

Query: 155 IHQPSGGYSGQAKDITIHTKQIVRVWDALNELYSKHTSQPIDTIKEYMDRDYFMTPEEAK 214
           +HQPSGG+ GQA DI  H + I+R+   LNE+Y +HT Q  + I+  +DRD+FMT EEAK
Sbjct: 130 VHQPSGGFQGQASDIERHAQDIIRMKRHLNEIYVQHTGQDYEIIENTLDRDHFMTAEEAK 189

Query: 215 EFGIIDEVMDQR 227
            FG+ID+V+  R
Sbjct: 190 MFGLIDDVIQYR 201

[Close]

BLAST of CmoCh01G002610.1 vs. ExPASy Swiss-Prot
Match: B2S5W1 (ATP-dependent Clp protease proteolytic subunit OS=Brucella abortus (strain S19) OX=430066 GN=clpP PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 3.8e-70
Identity = 123/195 (63.08%), Postives = 159/195 (81.54%), Query Frame = 0


Query: 35  SLIPMVIEHTSRGERAYDIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPIN 94
           +L+PMV+E T+RGERAYDIFSRLLKERII +NGP+ D  + +V AQLLFLE+ENP K IN
Sbjct: 10  NLVPMVVEQTNRGERAYDIFSRLLKERIIFVNGPVEDGMSMLVCAQLLFLEAENPKKEIN 69

Query: 95  MYLNSPGGAVTAGLAIYDTMQYIRSPINTICLGQAASMASLLLAAGAKGERRSLPNATIM 154
           MY+NSPGG VT+G+AIYDTMQ+IR P++T+C+GQAASM SLLL AGA G R +LPNA IM
Sbjct: 70  MYINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGATGHRYALPNARIM 129

Query: 155 IHQPSGGYSGQAKDITIHTKQIVRVWDALNELYSKHTSQPIDTIKEYMDRDYFMTPEEAK 214
           +HQPSGG+ GQA DI  H + I+++   LNE+Y KHT +  DTI+  +DRD+FMT +EA 
Sbjct: 130 VHQPSGGFQGQASDIERHAQDIIKMKRRLNEIYVKHTGRDYDTIERTLDRDHFMTAQEAL 189

Query: 215 EFGIIDEVMDQRPIA 230
           EFG+ID+V++ R ++
Sbjct: 190 EFGLIDKVVEARDVS 204

[Close]

BLAST of CmoCh01G002610.1 vs. ExPASy TrEMBL
Match: A0A6J1GA70 (ATP-dependent Clp protease proteolytic subunit OS=Cucurbita moschata OX=3662 GN=LOC111452357 PE=3 SV=1)

HSP 1 Score: 485.0 bits (1247), Expect = 1.9e-133
Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 0


Query: 1   MIWRRLASTSSMLLAKSTALANGRTAARDFRRGYSLIPMVIEHTSRGERAYDIFSRLLKE 60
           MIWRRLASTSSMLLAKSTALANGRTAARDFRRGYSLIPMVIEHTSRGERAYDIFSRLLKE
Sbjct: 1   MIWRRLASTSSMLLAKSTALANGRTAARDFRRGYSLIPMVIEHTSRGERAYDIFSRLLKE 60

Query: 61  RIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIYDTMQYIRSP 120
           RIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIYDTMQYIRSP
Sbjct: 61  RIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIYDTMQYIRSP 120

Query: 121 INTICLGQAASMASLLLAAGAKGERRSLPNATIMIHQPSGGYSGQAKDITIHTKQIVRVW 180
           INTICLGQAASMASLLLAAGAKGERRSLPNATIMIHQPSGGYSGQAKDITIHTKQIVRVW
Sbjct: 121 INTICLGQAASMASLLLAAGAKGERRSLPNATIMIHQPSGGYSGQAKDITIHTKQIVRVW 180

Query: 181 DALNELYSKHTSQPIDTIKEYMDRDYFMTPEEAKEFGIIDEVMDQRPIALVTDAVGSQGK 240
           DALNELYSKHTSQPIDTIKEYMDRDYFMTPEEAKEFGIIDEVMDQRPIALVTDAVGSQGK
Sbjct: 181 DALNELYSKHTSQPIDTIKEYMDRDYFMTPEEAKEFGIIDEVMDQRPIALVTDAVGSQGK 240

Query: 241 DKGSN 246
           DKGSN
Sbjct: 241 DKGSN 245

[Close]

BLAST of CmoCh01G002610.1 vs. ExPASy TrEMBL
Match: A0A6J1KEG6 (ATP-dependent Clp protease proteolytic subunit OS=Cucurbita maxima OX=3661 GN=LOC111493104 PE=3 SV=1)

HSP 1 Score: 477.2 bits (1227), Expect = 4.0e-131
Identity = 240/245 (97.96%), Postives = 242/245 (98.78%), Query Frame = 0


Query: 1   MIWRRLASTSSMLLAKSTALANGRTAARDFRRGYSLIPMVIEHTSRGERAYDIFSRLLKE 60
           MIWR LASTSSMLLAKST LANGRTAARDFRR YSLIPMVIEHTSRGERAYDIFSRLLKE
Sbjct: 1   MIWRSLASTSSMLLAKSTGLANGRTAARDFRRAYSLIPMVIEHTSRGERAYDIFSRLLKE 60

Query: 61  RIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIYDTMQYIRSP 120
           RIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIYDTMQYIRSP
Sbjct: 61  RIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIYDTMQYIRSP 120

Query: 121 INTICLGQAASMASLLLAAGAKGERRSLPNATIMIHQPSGGYSGQAKDITIHTKQIVRVW 180
           INTICLGQAASMASLLLAAGAKGERRSLPNATIMIHQPSGGYSGQAKDITIHTKQIVRVW
Sbjct: 121 INTICLGQAASMASLLLAAGAKGERRSLPNATIMIHQPSGGYSGQAKDITIHTKQIVRVW 180

Query: 181 DALNELYSKHTSQPIDTIKEYMDRDYFMTPEEAKEFGIIDEVMDQRPIALVTDAVGSQGK 240
           DALNELYSKHTSQP+DTIKEYMDRDYFMTPEEAKEFGIIDEVMDQRPIALVTDAVG+QGK
Sbjct: 181 DALNELYSKHTSQPVDTIKEYMDRDYFMTPEEAKEFGIIDEVMDQRPIALVTDAVGTQGK 240

Query: 241 DKGSN 246
           DKGSN
Sbjct: 241 DKGSN 245

[Close]

BLAST of CmoCh01G002610.1 vs. ExPASy TrEMBL
Match: A0A6J1DJW7 (ATP-dependent Clp protease proteolytic subunit OS=Momordica charantia OX=3673 GN=LOC111020740 PE=3 SV=1)

HSP 1 Score: 452.6 bits (1163), Expect = 1.0e-123
Identity = 229/245 (93.47%), Postives = 237/245 (96.73%), Query Frame = 0


Query: 1   MIWRRLASTSSMLLAKSTALANGRTAARDFRRGYSLIPMVIEHTSRGERAYDIFSRLLKE 60
           MIWR LAST SMLLAKST+ ANG TAARDFRR YSLIPMVIEHTSRGERAYDIFSRLLKE
Sbjct: 1   MIWRSLAST-SMLLAKSTSPANGTTAARDFRRAYSLIPMVIEHTSRGERAYDIFSRLLKE 60

Query: 61  RIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIYDTMQYIRSP 120
           RIICINGPISDDT+HVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIYDTMQYIRSP
Sbjct: 61  RIICINGPISDDTSHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIYDTMQYIRSP 120

Query: 121 INTICLGQAASMASLLLAAGAKGERRSLPNATIMIHQPSGGYSGQAKDITIHTKQIVRVW 180
           INTICLGQAASMASLLLAAGAKGERRSLPNATIMIHQPSGGYSGQAKD+TIHTKQIVRVW
Sbjct: 121 INTICLGQAASMASLLLAAGAKGERRSLPNATIMIHQPSGGYSGQAKDMTIHTKQIVRVW 180

Query: 181 DALNELYSKHTSQPIDTIKEYMDRDYFMTPEEAKEFGIIDEVMDQRPIALVTDAVGSQGK 240
           DALNELYSKHTSQ +D I++YMDRDYFMTPEEAKEFGIIDEV+DQRPIALVTDAVG +GK
Sbjct: 181 DALNELYSKHTSQSVDIIQKYMDRDYFMTPEEAKEFGIIDEVIDQRPIALVTDAVGDEGK 240

Query: 241 DKGSN 246
           DKGSN
Sbjct: 241 DKGSN 244

[Close]

BLAST of CmoCh01G002610.1 vs. ExPASy TrEMBL
Match: A0A5D3BXE8 (ATP-dependent Clp protease proteolytic subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1856G00130 PE=3 SV=1)

HSP 1 Score: 448.7 bits (1153), Expect = 1.5e-122
Identity = 224/242 (92.56%), Postives = 234/242 (96.69%), Query Frame = 0


Query: 1   MIWRRLASTSSMLLAKSTALANGRTAARDFRRGYSLIPMVIEHTSRGERAYDIFSRLLKE 60
           MIWR LASTS +L AKSTA A+GRTA RDFRR YSL+PMVIEHTSRGERAYDIFSRLLKE
Sbjct: 1   MIWRSLASTSMLLAAKSTASASGRTAMRDFRRAYSLVPMVIEHTSRGERAYDIFSRLLKE 60

Query: 61  RIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIYDTMQYIRSP 120
           RIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIYDTMQYIRSP
Sbjct: 61  RIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIYDTMQYIRSP 120

Query: 121 INTICLGQAASMASLLLAAGAKGERRSLPNATIMIHQPSGGYSGQAKDITIHTKQIVRVW 180
           INTICLGQAASMASLLLAAGAKGERRSLPNATIMIHQPSGGYSGQAKD+TIHTKQIVRVW
Sbjct: 121 INTICLGQAASMASLLLAAGAKGERRSLPNATIMIHQPSGGYSGQAKDMTIHTKQIVRVW 180

Query: 181 DALNELYSKHTSQPIDTIKEYMDRDYFMTPEEAKEFGIIDEVMDQRPIALVTDAVGSQGK 240
           DALNELYSKHTSQ +D I++YMDRDYFMTPEEAKEFGIIDEV+DQRPIALVTDAVG++GK
Sbjct: 181 DALNELYSKHTSQSVDIIQKYMDRDYFMTPEEAKEFGIIDEVIDQRPIALVTDAVGNEGK 240

Query: 241 DK 243
           DK
Sbjct: 241 DK 242

[Close]

BLAST of CmoCh01G002610.1 vs. ExPASy TrEMBL
Match: A0A1S3CFJ3 (ATP-dependent Clp protease proteolytic subunit OS=Cucumis melo OX=3656 GN=LOC103500353 PE=3 SV=1)

HSP 1 Score: 448.7 bits (1153), Expect = 1.5e-122
Identity = 224/242 (92.56%), Postives = 234/242 (96.69%), Query Frame = 0


Query: 1   MIWRRLASTSSMLLAKSTALANGRTAARDFRRGYSLIPMVIEHTSRGERAYDIFSRLLKE 60
           MIWR LASTS +L AKSTA A+GRTA RDFRR YSL+PMVIEHTSRGERAYDIFSRLLKE
Sbjct: 1   MIWRSLASTSMLLAAKSTASASGRTAMRDFRRAYSLVPMVIEHTSRGERAYDIFSRLLKE 60

Query: 61  RIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIYDTMQYIRSP 120
           RIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIYDTMQYIRSP
Sbjct: 61  RIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIYDTMQYIRSP 120

Query: 121 INTICLGQAASMASLLLAAGAKGERRSLPNATIMIHQPSGGYSGQAKDITIHTKQIVRVW 180
           INTICLGQAASMASLLLAAGAKGERRSLPNATIMIHQPSGGYSGQAKD+TIHTKQIVRVW
Sbjct: 121 INTICLGQAASMASLLLAAGAKGERRSLPNATIMIHQPSGGYSGQAKDMTIHTKQIVRVW 180

Query: 181 DALNELYSKHTSQPIDTIKEYMDRDYFMTPEEAKEFGIIDEVMDQRPIALVTDAVGSQGK 240
           DALNELYSKHTSQ +D I++YMDRDYFMTPEEAKEFGIIDEV+DQRPIALVTDAVG++GK
Sbjct: 181 DALNELYSKHTSQSVDIIQKYMDRDYFMTPEEAKEFGIIDEVIDQRPIALVTDAVGNEGK 240

Query: 241 DK 243
           DK
Sbjct: 241 DK 242

[Close]

BLAST of CmoCh01G002610.1 vs. NCBI nr
Match: XP_022948796.1 (ATP-dependent Clp protease proteolytic subunit 2, mitochondrial-like [Cucurbita moschata] >KAG6606902.1 ATP-dependent Clp protease proteolytic subunit 2, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036605.1 ATP-dependent Clp protease proteolytic subunit 2, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 485.0 bits (1247), Expect = 3.9e-133
Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 0


Query: 1   MIWRRLASTSSMLLAKSTALANGRTAARDFRRGYSLIPMVIEHTSRGERAYDIFSRLLKE 60
           MIWRRLASTSSMLLAKSTALANGRTAARDFRRGYSLIPMVIEHTSRGERAYDIFSRLLKE
Sbjct: 1   MIWRRLASTSSMLLAKSTALANGRTAARDFRRGYSLIPMVIEHTSRGERAYDIFSRLLKE 60

Query: 61  RIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIYDTMQYIRSP 120
           RIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIYDTMQYIRSP
Sbjct: 61  RIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIYDTMQYIRSP 120

Query: 121 INTICLGQAASMASLLLAAGAKGERRSLPNATIMIHQPSGGYSGQAKDITIHTKQIVRVW 180
           INTICLGQAASMASLLLAAGAKGERRSLPNATIMIHQPSGGYSGQAKDITIHTKQIVRVW
Sbjct: 121 INTICLGQAASMASLLLAAGAKGERRSLPNATIMIHQPSGGYSGQAKDITIHTKQIVRVW 180

Query: 181 DALNELYSKHTSQPIDTIKEYMDRDYFMTPEEAKEFGIIDEVMDQRPIALVTDAVGSQGK 240
           DALNELYSKHTSQPIDTIKEYMDRDYFMTPEEAKEFGIIDEVMDQRPIALVTDAVGSQGK
Sbjct: 181 DALNELYSKHTSQPIDTIKEYMDRDYFMTPEEAKEFGIIDEVMDQRPIALVTDAVGSQGK 240

Query: 241 DKGSN 246
           DKGSN
Sbjct: 241 DKGSN 245

[Close]

BLAST of CmoCh01G002610.1 vs. NCBI nr
Match: XP_022998489.1 (ATP-dependent Clp protease proteolytic subunit 2, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 477.2 bits (1227), Expect = 8.2e-131
Identity = 240/245 (97.96%), Postives = 242/245 (98.78%), Query Frame = 0


Query: 1   MIWRRLASTSSMLLAKSTALANGRTAARDFRRGYSLIPMVIEHTSRGERAYDIFSRLLKE 60
           MIWR LASTSSMLLAKST LANGRTAARDFRR YSLIPMVIEHTSRGERAYDIFSRLLKE
Sbjct: 1   MIWRSLASTSSMLLAKSTGLANGRTAARDFRRAYSLIPMVIEHTSRGERAYDIFSRLLKE 60

Query: 61  RIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIYDTMQYIRSP 120
           RIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIYDTMQYIRSP
Sbjct: 61  RIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIYDTMQYIRSP 120

Query: 121 INTICLGQAASMASLLLAAGAKGERRSLPNATIMIHQPSGGYSGQAKDITIHTKQIVRVW 180
           INTICLGQAASMASLLLAAGAKGERRSLPNATIMIHQPSGGYSGQAKDITIHTKQIVRVW
Sbjct: 121 INTICLGQAASMASLLLAAGAKGERRSLPNATIMIHQPSGGYSGQAKDITIHTKQIVRVW 180

Query: 181 DALNELYSKHTSQPIDTIKEYMDRDYFMTPEEAKEFGIIDEVMDQRPIALVTDAVGSQGK 240
           DALNELYSKHTSQP+DTIKEYMDRDYFMTPEEAKEFGIIDEVMDQRPIALVTDAVG+QGK
Sbjct: 181 DALNELYSKHTSQPVDTIKEYMDRDYFMTPEEAKEFGIIDEVMDQRPIALVTDAVGTQGK 240

Query: 241 DKGSN 246
           DKGSN
Sbjct: 241 DKGSN 245

[Close]

BLAST of CmoCh01G002610.1 vs. NCBI nr
Match: XP_023524814.1 (ATP-dependent Clp protease proteolytic subunit 2, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 474.6 bits (1220), Expect = 5.3e-130
Identity = 239/245 (97.55%), Postives = 242/245 (98.78%), Query Frame = 0


Query: 1   MIWRRLASTSSMLLAKSTALANGRTAARDFRRGYSLIPMVIEHTSRGERAYDIFSRLLKE 60
           MIWR LASTSSMLLAKSTALANGRTAARDFRR YSLIPMVIEHTSRGERAYDIFSRLLKE
Sbjct: 1   MIWRSLASTSSMLLAKSTALANGRTAARDFRRAYSLIPMVIEHTSRGERAYDIFSRLLKE 60

Query: 61  RIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIYDTMQYIRSP 120
           RIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIYDTMQYIRSP
Sbjct: 61  RIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIYDTMQYIRSP 120

Query: 121 INTICLGQAASMASLLLAAGAKGERRSLPNATIMIHQPSGGYSGQAKDITIHTKQIVRVW 180
           INTICLGQAASMASLLLAAGAKGERRSLPNATIMIHQPSGGYSGQAKDITIHTKQIVRVW
Sbjct: 121 INTICLGQAASMASLLLAAGAKGERRSLPNATIMIHQPSGGYSGQAKDITIHTKQIVRVW 180

Query: 181 DALNELYSKHTSQPIDTIKEYMDRDYFMTPEEAKEFGIIDEVMDQRPIALVTDAVGSQGK 240
           DALNELYSKHTSQP+DTIKEYMDRDYFMTP EAKEFGIIDEVMDQRPIALVTDAVG+QG+
Sbjct: 181 DALNELYSKHTSQPVDTIKEYMDRDYFMTPGEAKEFGIIDEVMDQRPIALVTDAVGTQGQ 240

Query: 241 DKGSN 246
           DKGSN
Sbjct: 241 DKGSN 245

[Close]

BLAST of CmoCh01G002610.1 vs. NCBI nr
Match: XP_038903213.1 (ATP-dependent Clp protease proteolytic subunit 2, mitochondrial [Benincasa hispida] >XP_038903214.1 ATP-dependent Clp protease proteolytic subunit 2, mitochondrial [Benincasa hispida] >XP_038903215.1 ATP-dependent Clp protease proteolytic subunit 2, mitochondrial [Benincasa hispida] >XP_038903216.1 ATP-dependent Clp protease proteolytic subunit 2, mitochondrial [Benincasa hispida])

HSP 1 Score: 453.8 bits (1166), Expect = 9.7e-124
Identity = 226/245 (92.24%), Postives = 237/245 (96.73%), Query Frame = 0


Query: 1   MIWRRLASTSSMLLAKSTALANGRTAARDFRRGYSLIPMVIEHTSRGERAYDIFSRLLKE 60
           MIWR LASTS +L AKSTA ANGRTA RDFRR YSL+PMVIEHTSRGERAYDIFSRLLKE
Sbjct: 1   MIWRSLASTSMLLAAKSTASANGRTATRDFRRAYSLVPMVIEHTSRGERAYDIFSRLLKE 60

Query: 61  RIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIYDTMQYIRSP 120
           RIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIYDTMQYIRSP
Sbjct: 61  RIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIYDTMQYIRSP 120

Query: 121 INTICLGQAASMASLLLAAGAKGERRSLPNATIMIHQPSGGYSGQAKDITIHTKQIVRVW 180
           INTICLGQAASMASLLLAAGAKGERRSLPNATIMIHQPSGGYSGQAKD+TIHTKQIVRVW
Sbjct: 121 INTICLGQAASMASLLLAAGAKGERRSLPNATIMIHQPSGGYSGQAKDMTIHTKQIVRVW 180

Query: 181 DALNELYSKHTSQPIDTIKEYMDRDYFMTPEEAKEFGIIDEVMDQRPIALVTDAVGSQGK 240
           DALNELYSKHTSQ ++ I++YMDRDYFMTPEEAKEFGIIDEV+DQRPIALVTDAVG++GK
Sbjct: 181 DALNELYSKHTSQSVEIIQKYMDRDYFMTPEEAKEFGIIDEVIDQRPIALVTDAVGNEGK 240

Query: 241 DKGSN 246
           DKGS+
Sbjct: 241 DKGSS 245

[Close]

BLAST of CmoCh01G002610.1 vs. NCBI nr
Match: XP_022153186.1 (ATP-dependent Clp protease proteolytic subunit 2, mitochondrial [Momordica charantia])

HSP 1 Score: 452.6 bits (1163), Expect = 2.2e-123
Identity = 229/245 (93.47%), Postives = 237/245 (96.73%), Query Frame = 0


Query: 1   MIWRRLASTSSMLLAKSTALANGRTAARDFRRGYSLIPMVIEHTSRGERAYDIFSRLLKE 60
           MIWR LAST SMLLAKST+ ANG TAARDFRR YSLIPMVIEHTSRGERAYDIFSRLLKE
Sbjct: 1   MIWRSLAST-SMLLAKSTSPANGTTAARDFRRAYSLIPMVIEHTSRGERAYDIFSRLLKE 60

Query: 61  RIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIYDTMQYIRSP 120
           RIICINGPISDDT+HVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIYDTMQYIRSP
Sbjct: 61  RIICINGPISDDTSHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIYDTMQYIRSP 120

Query: 121 INTICLGQAASMASLLLAAGAKGERRSLPNATIMIHQPSGGYSGQAKDITIHTKQIVRVW 180
           INTICLGQAASMASLLLAAGAKGERRSLPNATIMIHQPSGGYSGQAKD+TIHTKQIVRVW
Sbjct: 121 INTICLGQAASMASLLLAAGAKGERRSLPNATIMIHQPSGGYSGQAKDMTIHTKQIVRVW 180

Query: 181 DALNELYSKHTSQPIDTIKEYMDRDYFMTPEEAKEFGIIDEVMDQRPIALVTDAVGSQGK 240
           DALNELYSKHTSQ +D I++YMDRDYFMTPEEAKEFGIIDEV+DQRPIALVTDAVG +GK
Sbjct: 181 DALNELYSKHTSQSVDIIQKYMDRDYFMTPEEAKEFGIIDEVIDQRPIALVTDAVGDEGK 240

Query: 241 DKGSN 246
           DKGSN
Sbjct: 241 DKGSN 244

[Close]

BLAST of CmoCh01G002610.1 vs. TAIR 10
Match: AT5G23140.1 (nuclear-encoded CLP protease P7 )

HSP 1 Score: 382.5 bits (981), Expect = 2.6e-106
Identity = 192/242 (79.34%), Postives = 215/242 (88.84%), Query Frame = 0


Query: 4   RRLASTSSMLLAKSTALANGRTAARDFRRGYSLIPMVIEHTSRGERAYDIFSRLLKERII 63
           R L S + ML +  +++A   T+    RR YSLIPMVIEH+SRGERAYDIFSRLLKERII
Sbjct: 3   RGLVSGAKMLSSTPSSMA---TSIATGRRSYSLIPMVIEHSSRGERAYDIFSRLLKERII 62

Query: 64  CINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIYDTMQYIRSPINT 123
           CINGPI+DDT+HVVVAQLL+LESENPSKPI+MYLNSPGG VTAGLAIYDTMQYIRSPI+T
Sbjct: 63  CINGPINDDTSHVVVAQLLYLESENPSKPIHMYLNSPGGHVTAGLAIYDTMQYIRSPIST 122

Query: 124 ICLGQAASMASLLLAAGAKGERRSLPNATIMIHQPSGGYSGQAKDITIHTKQIVRVWDAL 183
           ICLGQAASMASLLLAAGAKG+RRSLPNAT+MIHQPSGGYSGQAKDITIHTKQIVRVWDAL
Sbjct: 123 ICLGQAASMASLLLAAGAKGQRRSLPNATVMIHQPSGGYSGQAKDITIHTKQIVRVWDAL 182

Query: 184 NELYSKHTSQPIDTIKEYMDRDYFMTPEEAKEFGIIDEVMDQRPIALVTDAVGSQGKDKG 243
           NELY KHT QP+D +   MDRD+FMTPEEAK FGIIDEV+D+RP+ LV DAVG++ KDK 
Sbjct: 183 NELYVKHTGQPLDVVANNMDRDHFMTPEEAKAFGIIDEVIDERPLELVKDAVGNESKDKS 241

Query: 244 SN 246
           S+
Sbjct: 243 SS 241

[Close]

BLAST of CmoCh01G002610.1 vs. TAIR 10
Match: AT1G02560.1 (nuclear encoded CLP protease 5 )

HSP 1 Score: 180.6 bits (457), Expect = 1.5e-45
Identity = 88/176 (50.00%), Postives = 126/176 (71.59%), Query Frame = 0


Query: 48  ERAYDIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAG 107
           ER   I S+L + RII   G + DD A+++VAQLL+L++ +P+K I MY+NSPGG+VTAG
Sbjct: 110 ERFQSIISQLFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAG 169

Query: 108 LAIYDTMQYIRSPINTICLGQAASMASLLLAAGAKGERRSLPNATIMIHQPSGGYSGQAK 167
           +AI+DTM++IR  ++T+C+G AASM + LL+AG KG+R SLPN+ IMIHQP GG  G   
Sbjct: 170 MAIFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQT 229

Query: 168 DITIHTKQIVRVWDALNELYSKHTSQPIDTIKEYMDRDYFMTPEEAKEFGIIDEVM 224
           DI I   +++     LN   + HT Q ++ I +  DRD+FM+ +EAKE+G+ID V+
Sbjct: 230 DIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVI 285

[Close]

BLAST of CmoCh01G002610.1 vs. TAIR 10
Match: AT1G66670.1 (CLP protease proteolytic subunit 3 )

HSP 1 Score: 162.5 bits (410), Expect = 4.2e-40
Identity = 74/180 (41.11%), Postives = 125/180 (69.44%), Query Frame = 0


Query: 52  DIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIY 111
           D  + LL++RI+ +   + D TA +V++QLL L++E+  + I +++NSPGG++TAG+ IY
Sbjct: 85  DTTNMLLRQRIVFLGSQVDDMTADLVISQLLLLDAEDSERDITLFINSPGGSITAGMGIY 144

Query: 112 DTMQYIRSPINTICLGQAASMASLLLAAGAKGERRSLPNATIMIHQPSGGYSGQAKDITI 171
           D M+  ++ ++T+CLG AASM + LLA+G+KG+R  +PN+ +MIHQP G   G+A +++I
Sbjct: 145 DAMKQCKADVSTVCLGLAASMGAFLLASGSKGKRYCMPNSKVMIHQPLGTAGGKATEMSI 204

Query: 172 HTKQIVRVWDALNELYSKHTSQPIDTIKEYMDRDYFMTPEEAKEFGIIDEVMDQRPIALV 231
             ++++     LN+++S+ T +P   I+   DRD F+ P EAKE+G+ID V+D     L+
Sbjct: 205 RIREMMYHKIKLNKIFSRITGKPESEIESDTDRDNFLNPWEAKEYGLIDAVIDDGKPGLI 264

[Close]

BLAST of CmoCh01G002610.1 vs. TAIR 10
Match: AT5G45390.1 (CLP protease P4 )

HSP 1 Score: 160.6 bits (405), Expect = 1.6e-39
Identity = 78/183 (42.62%), Postives = 125/183 (68.31%), Query Frame = 0


Query: 42  EHTSRGERAYDIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPG 101
           E   RG  + D+   LL+ERI+ +   I D  A  +++QLL L++++P K I +++NSPG
Sbjct: 70  ESAIRGAES-DVMGLLLRERIVFLGSSIDDFVADAIMSQLLLLDAKDPKKDIKLFINSPG 129

Query: 102 GAVTAGLAIYDTMQYIRSPINTICLGQAASMASLLLAAGAKGERRSLPNATIMIHQPSGG 161
           G+++A +AIYD +Q +R+ ++TI LG AAS AS++L AG KG+R ++PN  IMIHQP GG
Sbjct: 130 GSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGAGTKGKRFAMPNTRIMIHQPLGG 189

Query: 162 YSGQAKDITIHTKQIVRVWDALNELYSKHTSQPIDTIKEYMDRDYFMTPEEAKEFGIIDE 221
            SGQA D+ I  K+++   + +  + +  TS+  + + + +DRD +M+P EA E+G+ID 
Sbjct: 190 ASGQAIDVEIQAKEVMHNKNNVTSIIAGCTSRSFEQVLKDIDRDRYMSPIEAVEYGLIDG 249

Query: 222 VMD 225
           V+D
Sbjct: 250 VID 251

[Close]

BLAST of CmoCh01G002610.1 vs. TAIR 10
Match: AT1G11750.1 (CLP protease proteolytic subunit 6 )

HSP 1 Score: 141.4 bits (355), Expect = 1.0e-33
Identity = 68/173 (39.31%), Postives = 105/173 (60.69%), Query Frame = 0


Query: 52  DIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIY 111
           D+ S L + RII I  PI+   A  V++QL+ L S +    I MYLN PGG+  + LAIY
Sbjct: 96  DLSSVLFRNRIIFIGQPINAQVAQRVISQLVTLASIDDKSDILMYLNCPGGSTYSVLAIY 155

Query: 112 DTMQYIRSPINTICLGQAASMASLLLAAGAKGERRSLPNATIMIHQPSGGYSGQAKDITI 171
           D M +I+  + T+  G AAS  +LLLA G KG R ++PN  +MIHQP  G  G  +D+  
Sbjct: 156 DCMSWIKPKVGTVAFGVAASQGALLLAGGEKGMRYAMPNTRVMIHQPQTGCGGHVEDVRR 215

Query: 172 HTKQIVRVWDALNELYSKHTSQPIDTIKEYMDRDYFMTPEEAKEFGIIDEVMD 225
              + +     ++ +Y+  T QP++ +++Y +RD F++  EA EFG+ID +++
Sbjct: 216 QVNEAIEARQKIDRMYAAFTGQPLEKVQQYTERDRFLSASEALEFGLIDGLLE 268

The following BLAST results are available for this feature:

BLAST of CmoCh01G002610.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FN42	3.6e-105	79.34	ATP-dependent Clp protease proteolytic subunit 2, mitochondrial OS=Arabidopsis t...	[more]
A5D447	7.6e-71	66.15	ATP-dependent Clp protease proteolytic subunit OS=Pelotomaculum thermopropionicu...	[more]
Q6G3Z3	1.7e-70	65.10	ATP-dependent Clp protease proteolytic subunit OS=Bartonella henselae (strain AT...	[more]
A1USA7	3.8e-70	66.15	ATP-dependent Clp protease proteolytic subunit OS=Bartonella bacilliformis (stra...	[more]
B2S5W1	3.8e-70	63.08	ATP-dependent Clp protease proteolytic subunit OS=Brucella abortus (strain S19) ...	[more]

BLAST of CmoCh01G002610.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GA70	1.9e-133	100.00	ATP-dependent Clp protease proteolytic subunit OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1KEG6	4.0e-131	97.96	ATP-dependent Clp protease proteolytic subunit OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1DJW7	1.0e-123	93.47	ATP-dependent Clp protease proteolytic subunit OS=Momordica charantia OX=3673 GN...	[more]
A0A5D3BXE8	1.5e-122	92.56	ATP-dependent Clp protease proteolytic subunit OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3CFJ3	1.5e-122	92.56	ATP-dependent Clp protease proteolytic subunit OS=Cucumis melo OX=3656 GN=LOC103...	[more]

BLAST of CmoCh01G002610.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948796.1	3.9e-133	100.00	ATP-dependent Clp protease proteolytic subunit 2, mitochondrial-like [Cucurbita ...	[more]
XP_022998489.1	8.2e-131	97.96	ATP-dependent Clp protease proteolytic subunit 2, mitochondrial-like [Cucurbita ...	[more]
XP_023524814.1	5.3e-130	97.55	ATP-dependent Clp protease proteolytic subunit 2, mitochondrial-like [Cucurbita ...	[more]
XP_038903213.1	9.7e-124	92.24	ATP-dependent Clp protease proteolytic subunit 2, mitochondrial [Benincasa hispi...	[more]
XP_022153186.1	2.2e-123	93.47	ATP-dependent Clp protease proteolytic subunit 2, mitochondrial [Momordica chara...	[more]

BLAST of CmoCh01G002610.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G23140.1	2.6e-106	79.34	nuclear-encoded CLP protease P7	[more]
AT1G02560.1	1.5e-45	50.00	nuclear encoded CLP protease 5	[more]
AT1G66670.1	4.2e-40	41.11	CLP protease proteolytic subunit 3	[more]
AT5G45390.1	1.6e-39	42.62	CLP protease P4	[more]
AT1G11750.1	1.0e-33	39.31	CLP protease proteolytic subunit 6	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001907	ATP-dependent Clp protease proteolytic subunit	PRINTS	PR00127	CLPPROTEASEP	coord: 144..163 score: 52.88 coord: 123..140 score: 66.25 coord: 52..67 score: 48.12 coord: 92..112 score: 60.6 coord: 201..220 score: 50.12
IPR001907	ATP-dependent Clp protease proteolytic subunit	HAMAP	MF_00444	ClpP	coord: 36..226 score: 40.042957
IPR001907	ATP-dependent Clp protease proteolytic subunit	CDD	cd07017	S14_ClpP_2	coord: 52..222 e-value: 5.98825E-107 score: 304.364
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PFAM	PF00574	CLP_protease	coord: 46..225 e-value: 1.6E-80 score: 269.3
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PANTHER	PTHR10381	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT	coord: 25..244
None	No IPR available	GENE3D	3.90.226.10		coord: 27..231 e-value: 9.6E-88 score: 295.1
None	No IPR available	PANTHER	PTHR10381:SF49	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT	coord: 25..244
IPR018215	ClpP, Ser active site	PROSITE	PS00381	CLP_PROTEASE_SER	coord: 123..134
IPR033135	ClpP, histidine active site	PROSITE	PS00382	CLP_PROTEASE_HIS	coord: 145..158
IPR029045	ClpP/crotonase-like domain superfamily	SUPERFAMILY	52096	ClpP/crotonase	coord: 44..227

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh01G002610	CmoCh01G002610	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G002610.1:exon:2032	CmoCh01G002610.1:exon:2032	exon
CmoCh01G002610.1:exon:2031	CmoCh01G002610.1:exon:2031	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G002610.1:three_prime_utr	CmoCh01G002610.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G002610.1:cds	CmoCh01G002610.1:cds_2	CDS
CmoCh01G002610.1:cds	CmoCh01G002610.1:cds	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G002610.1:five_prime_utr	CmoCh01G002610.1:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh01G002610.1	CmoCh01G002610.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
biological_process	GO:0006515	protein quality control for misfolded or incompletely synthesized proteins
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009368	endopeptidase Clp complex
cellular_component	GO:0009526	plastid envelope
molecular_function	GO:0004176	ATP-dependent peptidase activity
molecular_function	GO:0004252	serine-type endopeptidase activity
molecular_function	GO:0051117	ATPase binding