CmoCh01G000300.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G000300.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	receptor-like protein kinase
Location	Cmo_Chr01: 107793 .. 108102 (+)
Sequence length	231
RNA-Seq Expression	CmoCh01G000300.1
Synteny	CmoCh01G000300.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCTGATTCCACTCCCTGCTGTTGGGCTGGGATTCATTGTGATCAAAACCTTGAATCTCTCTTCCTATGGGGTTTCAGGTCACCTTGGACGCGAAATTGCTTTGACCACCAACGAATTCTCTGGTGCAATTTCTTCTGGGCTACGCAACTGTAGCCATTTAGAGTACTTGGATCTCTCCCTCAACCAATTAGGTGGAGAAATTCAATCGTTGATGTCCCTTAGGAACTTACACGTTTTTGAACTTCGATGCAAATGGTGTAACTGGCGCAGTTCCCGATTCGTTACTTCAAATATTAATAAAATGA

mRNA sequence

ATGCCTCTGATTCCACTCCCTGCTGTTGGGCTGGGATTCATTGTGATCAAAACCTTGAATCTCTCTTCCTATGGGGTTTCAGGTCACCTTGGACGCGAAATTGCTTTGACCACCAACGAATTCTCTGGTGCAATTTCTTCTGGGCTACGCAACTGTAGCCATTTAGAGTACTTGGATCTCTCCCTCAACCAATTAGTTCCCGATTCGTTACTTCAAATATTAATAAAATGA

Coding sequence (CDS)

ATGCCTCTGATTCCACTCCCTGCTGTTGGGCTGGGATTCATTGTGATCAAAACCTTGAATCTCTCTTCCTATGGGGTTTCAGGTCACCTTGGACGCGAAATTGCTTTGACCACCAACGAATTCTCTGGTGCAATTTCTTCTGGGCTACGCAACTGTAGCCATTTAGAGTACTTGGATCTCTCCCTCAACCAATTAGTTCCCGATTCGTTACTTCAAATATTAATAAAATGA

Protein sequence

MPLIPLPAVGLGFIVIKTLNLSSYGVSGHLGREIALTTNEFSGAISSGLRNCSHLEYLDLSLNQLVPDSLLQILIK

Homology

[Close]

BLAST of CmoCh01G000300.1 vs. ExPASy Swiss-Prot
Match: Q9FZ59 (Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana OX=3702 GN=PEPR2 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 7.0e-07
Identity = 33/66 (50.00%), Postives = 40/66 (60.61%), Query Frame = 0


Query: 15  VIKTLNLSSYGVSGHLGREIA---------LTTNEFSGAISSGLRNCSHLEYLDLSLNQL 69
           V++TLNLS+ G+SG LG EI          L+ N FSG + S L NC+ LEYLDLS N  
Sbjct: 77  VVETLNLSASGLSGQLGSEIGELKSLVTLDLSLNSFSGLLPSTLGNCTSLEYLDLSNNDF 136

[Close]

BLAST of CmoCh01G000300.1 vs. ExPASy Swiss-Prot
Match: P93194 (Receptor-like protein kinase OS=Ipomoea nil OX=35883 GN=INRPK1 PE=2 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 1.2e-06
Identity = 32/67 (47.76%), Postives = 41/67 (61.19%), Query Frame = 0


Query: 16  IKTLNLSSYGVSGHLGREIA---------LTTNEFSGAISSGLRNCSHLEYLDLSLNQL- 71
           + TLNLSSYG+SG  G EI+         L+ N F G+I S L NCS LE++DLS N   
Sbjct: 70  VDTLNLSSYGISGEFGPEISHLKHLKKVVLSGNGFFGSIPSQLGNCSLLEHIDLSSNSFT 129

[Close]

BLAST of CmoCh01G000300.1 vs. ExPASy TrEMBL
Match: A0A0A0L973 (Protein kinase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G651750 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.5e-09
Identity = 39/67 (58.21%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 16  IKTLNLSSYGVSGHLGREIA---------LTTNEFSGAISSGLRNCSHLEYLDLSLNQL- 71
           + T NLS YGVSGHLG EI+         LTTN+FSG I  G+ NCSHLEYLDLS NQ  
Sbjct: 70  VVTFNLSFYGVSGHLGPEISSLTQLRTIDLTTNDFSGEIPYGIGNCSHLEYLDLSFNQFS 129

[Close]

BLAST of CmoCh01G000300.1 vs. ExPASy TrEMBL
Match: A0A0A0LEL6 (Protein kinase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G651760 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.5e-09
Identity = 39/67 (58.21%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 16  IKTLNLSSYGVSGHLGREIA---------LTTNEFSGAISSGLRNCSHLEYLDLSLNQL- 71
           + T NLS YGVSGHLG EI+         LTTN+FSG I  G+ NCSHLEYLDLS NQ  
Sbjct: 69  VVTFNLSFYGVSGHLGPEISSLTQLRTIDLTTNDFSGEIPYGIGNCSHLEYLDLSFNQFS 128

[Close]

BLAST of CmoCh01G000300.1 vs. ExPASy TrEMBL
Match: A0A6J1K878 (receptor-like protein kinase OS=Cucurbita maxima OX=3661 GN=LOC111493131 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 6.6e-08
Identity = 39/68 (57.35%), Postives = 44/68 (64.71%), Query Frame = 0


Query: 18  TLNLSSYGVSGHLGREIA---------LTTNEFSGAISSGLRNCSHLEYLDLSLNQL--- 74
           TLNLSSYGVSG +G EI          L +N FSGAI  G+ NCSHLE+LDLSLNQ    
Sbjct: 71  TLNLSSYGVSGQIGPEIGNLTHLRTIDLISNTFSGAIPYGIGNCSHLEFLDLSLNQFGGQ 130

[Close]

BLAST of CmoCh01G000300.1 vs. ExPASy TrEMBL
Match: A0A5D3C5S7 (Receptor-like protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G00830 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.5e-07
Identity = 36/65 (55.38%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 18  TLNLSSYGVSGHLGREIA---------LTTNEFSGAISSGLRNCSHLEYLDLSLNQL--- 71
           T NLS YGVSG LG EIA         LTTN+FSG I  G+ NC+HLE+LDLS N+    
Sbjct: 71  TFNLSFYGVSGQLGPEIASLTQLRTIDLTTNDFSGEIPYGIGNCTHLEFLDLSFNRFGGE 130

[Close]

BLAST of CmoCh01G000300.1 vs. ExPASy TrEMBL
Match: A0A5A7VJI8 (Receptor-like protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G00840 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.5e-07
Identity = 38/65 (58.46%), Postives = 40/65 (61.54%), Query Frame = 0


Query: 18  TLNLSSYGVSGHLGREIA---------LTTNEFSGAISSGLRNCSHLEYLDLSLNQL--- 71
           T NLS Y VSG LG EIA         LTTN FSG I  G+ NCSHLEYLDLS NQ    
Sbjct: 71  TFNLSYYDVSGQLGHEIARLTHLRTIDLTTNGFSGEIPYGIGNCSHLEYLDLSFNQFGGE 130

[Close]

BLAST of CmoCh01G000300.1 vs. NCBI nr
Match: KAG6606686.1 (Leucine-rich repeat receptor-like protein kinase PEPR2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 126.3 bits (316), Expect = 1.1e-25
Identity = 64/65 (98.46%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MPLIPLPAVGLGFIVIKTLNLSSYGVSGHLGREIALTTNEFSGAISSGLRNCSHLEYLDL 60
          MPLIPLP VGLGFIVIKTLNLSSYGVSGHLGREIALTTNEFSGAISSGLRNCSHLEYLDL
Sbjct: 1  MPLIPLPVVGLGFIVIKTLNLSSYGVSGHLGREIALTTNEFSGAISSGLRNCSHLEYLDL 60

Query: 61 SLNQL 66
          SLNQL
Sbjct: 61 SLNQL 65

[Close]

BLAST of CmoCh01G000300.1 vs. NCBI nr
Match: XP_011651735.2 (LOW QUALITY PROTEIN: receptor-like protein kinase [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 9.4e-09
Identity = 39/67 (58.21%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 16  IKTLNLSSYGVSGHLGREIA---------LTTNEFSGAISSGLRNCSHLEYLDLSLNQL- 71
           + T NLS YGVSGHLG EI+         LTTN+FSG I  G+ NCSHLEYLDLS NQ  
Sbjct: 70  VVTFNLSFYGVSGHLGPEISSLTQLRTIDLTTNDFSGEIPYGIGNCSHLEYLDLSFNQFS 129

[Close]

BLAST of CmoCh01G000300.1 vs. NCBI nr
Match: KAE8650899.1 (hypothetical protein Csa_001729 [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 9.4e-09
Identity = 39/67 (58.21%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 16  IKTLNLSSYGVSGHLGREIA---------LTTNEFSGAISSGLRNCSHLEYLDLSLNQL- 71
           + T NLS YGVSGHLG EI+         LTTN+FSG I  G+ NCSHLEYLDLS NQ  
Sbjct: 70  VVTFNLSFYGVSGHLGPEISSLTQLRTIDLTTNDFSGEIPYGIGNCSHLEYLDLSFNQFS 129

[Close]

BLAST of CmoCh01G000300.1 vs. NCBI nr
Match: XP_022998517.1 (receptor-like protein kinase [Cucurbita maxima])

HSP 1 Score: 66.2 bits (160), Expect = 1.4e-07
Identity = 39/68 (57.35%), Postives = 44/68 (64.71%), Query Frame = 0


Query: 18  TLNLSSYGVSGHLGREIA---------LTTNEFSGAISSGLRNCSHLEYLDLSLNQL--- 74
           TLNLSSYGVSG +G EI          L +N FSGAI  G+ NCSHLE+LDLSLNQ    
Sbjct: 71  TLNLSSYGVSGQIGPEIGNLTHLRTIDLISNTFSGAIPYGIGNCSHLEFLDLSLNQFGGQ 130

[Close]

BLAST of CmoCh01G000300.1 vs. NCBI nr
Match: XP_023523603.1 (receptor-like protein kinase [Cucurbita pepo subsp. pepo])

HSP 1 Score: 65.1 bits (157), Expect = 3.0e-07
Identity = 38/70 (54.29%), Postives = 45/70 (64.29%), Query Frame = 0


Query: 16  IKTLNLSSYGVSGHLGREIA---------LTTNEFSGAISSGLRNCSHLEYLDLSLNQL- 74
           + TLNLSS+GVSG +G EI          L +N FSGAI  G+ NCSHLE+LDLSLNQ  
Sbjct: 69  VTTLNLSSHGVSGQIGPEIGNLTHLRTIDLISNTFSGAIPYGIGNCSHLEFLDLSLNQFG 128

[Close]

BLAST of CmoCh01G000300.1 vs. TAIR 10
Match: AT1G17750.1 (PEP1 receptor 2 )

HSP 1 Score: 54.3 bits (129), Expect = 5.0e-08
Identity = 33/66 (50.00%), Postives = 40/66 (60.61%), Query Frame = 0


Query: 15  VIKTLNLSSYGVSGHLGREIA---------LTTNEFSGAISSGLRNCSHLEYLDLSLNQL 69
           V++TLNLS+ G+SG LG EI          L+ N FSG + S L NC+ LEYLDLS N  
Sbjct: 77  VVETLNLSASGLSGQLGSEIGELKSLVTLDLSLNSFSGLLPSTLGNCTSLEYLDLSNNDF 136

[Close]

BLAST of CmoCh01G000300.1 vs. TAIR 10
Match: AT1G73066.1 (Leucine-rich repeat family protein )

HSP 1 Score: 49.3 bits (116), Expect = 1.6e-06
Identity = 30/67 (44.78%), Postives = 38/67 (56.72%), Query Frame = 0


Query: 16  IKTLNLSSYGVSGHLGREIA---------LTTNEFSGAISSGLRNCSHLEYLDLSLNQL- 71
           + +LN +  GVSG LG EI          +++N FSG I S L NCS L Y+DLS N   
Sbjct: 75  VTSLNFTGSGVSGQLGPEIGQLKSLEILDMSSNNFSGIIPSSLGNCSSLVYIDLSENSFS 134

[Close]

BLAST of CmoCh01G000300.1 vs. TAIR 10
Match: AT1G73080.1 (PEP1 receptor 1 )

HSP 1 Score: 43.1 bits (100), Expect = 1.1e-04
Identity = 29/67 (43.28%), Postives = 36/67 (53.73%), Query Frame = 0


Query: 16  IKTLNLSSYGVSGHLGREIA---------LTTNEFSGAISSGLRNCSHLEYLDLSLN--- 71
           + +LN +   VSG LG EI          L+TN FSG I S L NC+ L  LDLS N   
Sbjct: 77  VASLNFTRSRVSGQLGPEIGELKSLQILDLSTNNFSGTIPSTLGNCTKLATLDLSENGFS 136

The following BLAST results are available for this feature:

BLAST of CmoCh01G000300.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FZ59	7.0e-07	50.00	Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana O...	[more]
P93194	1.2e-06	47.76	Receptor-like protein kinase OS=Ipomoea nil OX=35883 GN=INRPK1 PE=2 SV=2	[more]

BLAST of CmoCh01G000300.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L973	4.5e-09	58.21	Protein kinase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G651...	[more]
A0A0A0LEL6	4.5e-09	58.21	Protein kinase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G651...	[more]
A0A6J1K878	6.6e-08	57.35	receptor-like protein kinase OS=Cucurbita maxima OX=3661 GN=LOC111493131 PE=3 SV...	[more]
A0A5D3C5S7	2.5e-07	55.38	Receptor-like protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7VJI8	2.5e-07	58.46	Receptor-like protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]

BLAST of CmoCh01G000300.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6606686.1	1.1e-25	98.46	Leucine-rich repeat receptor-like protein kinase PEPR2, partial [Cucurbita argyr...	[more]
XP_011651735.2	9.4e-09	58.21	LOW QUALITY PROTEIN: receptor-like protein kinase [Cucumis sativus]	[more]
KAE8650899.1	9.4e-09	58.21	hypothetical protein Csa_001729 [Cucumis sativus]	[more]
XP_022998517.1	1.4e-07	57.35	receptor-like protein kinase [Cucurbita maxima]	[more]
XP_023523603.1	3.0e-07	54.29	receptor-like protein kinase [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmoCh01G000300.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G17750.1	5.0e-08	50.00	PEP1 receptor 2	[more]
AT1G73066.1	1.6e-06	44.78	Leucine-rich repeat family protein	[more]
AT1G73080.1	1.1e-04	43.28	PEP1 receptor 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 6..74 e-value: 3.2E-7 score: 30.8
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 16..71

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh01G000300	CmoCh01G000300	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G000300.1:exon:91	CmoCh01G000300.1:exon:91	exon
CmoCh01G000300.1:exon:92	CmoCh01G000300.1:exon:92	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G000300.1:cds	CmoCh01G000300.1:cds	CDS
CmoCh01G000300.1:cds	CmoCh01G000300.1:cds_2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh01G000300.1	CmoCh01G000300.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016301	kinase activity