Cmc11g0312281.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc11g0312281.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Unknown protein
Location	CMiso1.1chr11: 32035765 .. 32037946 (-)
Sequence length	971
RNA-Seq Expression	Cmc11g0312281.1
Synteny	Cmc11g0312281.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTACATTTTACGTAATGTTGCATAATTACGTAATATAAAAACGTAGTATAATAGCATATAATCCTAAATTTTACATAACACTATGGTATAATCCATGGGAAATTGGATCTATCTGCGATCCTCTTCTTGCTTTGTTTATTGGATTAACAATGGCAACCAGACCTGCTTGATAAGCAAACCCAATCAAACAAATTCTTCCCGTAGCGCCGCGGCCTGCAATCGGAATTTTGTGAAGAAGAAAGCAAACCCATTTGCTGTTGTTGATGTTCATCCACTTTTTTGCCTTCATAAACAATGGTAACCTCGCAAAATTCTGGTGCTTTCTTTTTCACTATCTCTCCTGTCCTCATTCTCTTCCCTAATAGCCTATTAACAAATCCCACATATCATATGAGAATTCGAAAAGAATTTTCTTTTTTTGTACGGACAACCCAATAGCAGCAACGTAGTACGAACTATAGGGATGTTGTTTCAACCATATTACCAAACAGTCAAGAATGTGATACTACTAGTTGGTTGAAACGAGTAGTGCGCTCGGGCTCGGGACATGCATCCCTTACATAATAGTGGTCTGTAACATCAATCAAATTTTAGTTTTTATTTGTTTTTTAAGATTGAATCGCGTTTTTAAAAATGGGTCATCCGTACAAAAATCTTAAAAACTCAAAATGAATTAAAAAAGAAGAGATCCAAACCTAGTGGAAAGAGGTGTTTTGGTCCCCATAACCAAATTTGTGATATTGAGCACTGGAATTAGTCGAAGGATTGCTTTGGTTGTTGTATTGCTCTCTAAAAGCAATGTGTCTACTTTTACCTGAGACAATATGGGGACAAATTAGTATCTCTCTTTTGTGTTTTTCGGGCAAGTTTAGGAGGACTCCAAAATGGTCATGAAACCACTCTGAAAATCAGTTTTGTTCCTTCCAAATCAATTTTAATACTATGAAAAATGAATTTACATTTTGAGTGATGAGTTATGTTTGAGTGATTAAAACGTATGATATTGTTTTGACAGGAGAGTCGGAGGAACTGATCTAATAACACCTTGGCATCAGTGCATAAGCGGATGTATTTCTCCAACAAATTTCTCCTTCTATTGTTTTCTTCATTGATATACACTCTTAATTGTTCTCGGGTCAGTTGGCTTCTTGCTAATCTTCCAACTGAAACCAAAATTTAAAAAAATGCTGCAACTCAGACAAATTCATGAACATAGATGAATATCAAACCAATGAATATGCTAACGTTCTCGTGATCATATCTTTTTTCTCGTGTGTCTGAAGAGATTCTCCATTGTGTAAACAAGGCGAGGATCACATTAGATTCAACACATTTTGCTCTTAGTGTTCTTCCCATCATCTAAAGAATGATTCATTCCTACAATCTAGACTTGAGTTTGACTCTTTTGGAAAGAAAAAGATAGTCAAAAGAGGCAAAAGGAACAAAATAATGGCATTTCACTATGACCCGTATTCATCAAACATCATCTGTAGGCATATTATAGAAGAAAAATAACCTAGAAAAGTTGTTGATGACTGATCTGCGAATCTTTGATTATGATCTGAAAGATGGAAAAAAAAAAAAAAAGGAAAGAAAGGTATAAATCTTGATTGCCTGGTGTAGGGATGTAGGTGAGAAGAGGAAAAACATGGACGAGAAAGACACAACAACCTGGTGAGACGACATGATTAAGGGCCCATTTAAGCACATCTATATCATCTTTACCCACGGCGACGTAGACGTCAGTTGCAGCACCGTCTCTGCTACTAATAATAGTCTTACTTTCCTCTCCGATCTCAACGATTTCTGGCGACATGATCCTTGCACTGAAACATTGCAGTTGCAACTCTGTTGGTCTCCCTTGAAAGTCCTCTTCCATTCTTAGCTCTCTCTCTTTCTCTTTTGCTATAACAATGAGAACTGATATGAGAATGAAAATGACAAGAATGTGTTTTAGTGGGGTGAAAGTATACAAAAGAGAAAAAAGAGAGAAAAAGAGGATAGATTCTCTTGTATCATGGGCCTGCAACTTCATTGTTATGTCAACATTTGTTTTTTTCCCCTTGTTGTATGTCTTTGGTTAAGTCAAATAGATGAGATGAAAAAACCAAAGAAATTCTTTTGATTTGCTTCTCTCAAAGTGAAAAGTGTGACCCTTATTTCCTTAGCTTTAACCACATGA

mRNA sequence

TTACATTTTACGTAATGTTGCATAATTACGTAATATAAAAACGTAGTATAATAGCATATAATCCTAAATTTTACATAACACTATGGTATAATCCATGGGAAATTGGATCTATCTGCGATCCTCTTCTTGCTTTGTTTATTGGATTAACAATGGCAACCAGACCTGCTTGATAAGCAAACCCAATCAAACAAATTCTTCCCGTAGCGCCGCGGCCTGCAATCGGAATTTTGTGAAGAAGAAAGCAAACCCATTTGCTGTTGTTGATGTTCATCCACTTTTTTGCCTTCATAAACAATGTCGGAGGAACTGATCTAATAACACCTTGGCATCAGTGCATAAGCGGATGTATTTCTCCAACAAATTTCTCCTTCTATTGTTTTCTTCATTGATATACACTCTTAATTGTTCTCGGGGATGTAGGTGAGAAGAGGAAAAACATGGACGAGAAAGACACAACAACCTGGTGAGACGACATGATTAAGGGCCCATTTAAGCACATCTATATCATCTTTACCCACGGCGACGTAGACGTCAGTTGCAGCACCGTCTCTGCTACTAATAATAGTCTTACTTTCCTCTCCGATCTCAACGATTTCTGGCGACATGATCCTTGCACTGAAACATTGCAGTTGCAACTCTGTTGGTCTCCCTTGAAAGTCCTCTTCCATTCTTAGCTCTCTCTCTTTCTCTTTTGCTATAACAATGAGAACTGATATGAGAATGAAAATGACAAGAATGTGTTTTAGTGGGGTGAAAGTATACAAAAGAGAAAAAAGAGAGAAAAAGAGGATAGATTCTCTTGTATCATGGGCCTGCAACTTCATTGTTATGTCAACATTTGTTTTTTTCCCCTTGTTGTATGTCTTTGGTTAAGTCAAATAGATGAGATGAAAAAACCAAAGAAATTCTTTTGATTTGCTTCTCTCAAAGTGAAAAGTGTGACCCTTATTTCCTTAGCTTTAACCACATGA

Coding sequence (CDS)

ATGGGAAATTGGATCTATCTGCGATCCTCTTCTTGCTTTGTTTATTGGATTAACAATGGCAACCAGACCTGCTTGATAAGCAAACCCAATCAAACAAATTCTTCCCGTAGCGCCGCGGCCTGCAATCGGAATTTTGTGAAGAAGAAAGCAAACCCATTTGCTGTTGTTGATGTTCATCCACTTTTTTGCCTTCATAAACAATGTCGGAGGAACTGA

Protein sequence

MGNWIYLRSSSCFVYWINNGNQTCLISKPNQTNSSRSAAACNRNFVKKKANPFAVVDVHPLFCLHKQCRRN

Homology

The following BLAST results are available for this feature:

BLAST of Cmc11g0312281.1 vs.


Match Name	E-value	Identity	Description

BLAST of Cmc11g0312281.1 vs.


Match Name	E-value	Identity	Description

BLAST of Cmc11g0312281.1 vs.


Match Name	E-value	Identity	Description

BLAST of Cmc11g0312281.1 vs.


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc11g0312281	Cmc11g0312281	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0312281.1-exon	Cmc11g0312281.1-exon-CMiso1.1chr11:32035765..32036323	exon
Cmc11g0312281.1-exon	Cmc11g0312281.1-exon-CMiso1.1chr11:32036812..32036926	exon
Cmc11g0312281.1-exon	Cmc11g0312281.1-exon-CMiso1.1chr11:32037650..32037946	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0312281.1-three_prime_utr	Cmc11g0312281.1-three_prime_utr-CMiso1.1chr11:32035765..32036323	three_prime_UTR
Cmc11g0312281.1-three_prime_utr	Cmc11g0312281.1-three_prime_utr-CMiso1.1chr11:32036812..32036913	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0312281.1-cds	Cmc11g0312281.1-cds-CMiso1.1chr11:32036914..32036926	CDS
Cmc11g0312281.1-cds	Cmc11g0312281.1-cds-CMiso1.1chr11:32037650..32037852	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0312281.1-five_prime_utr	Cmc11g0312281.1-five_prime_utr-CMiso1.1chr11:32037853..32037946	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc11g0312281.1	Cmc11g0312281.1-protein	polypeptide