Cmc11g0306561.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc11g0306561.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Rep_fac-A_C domain-containing protein
Location	CMiso1.1chr11: 28128758 .. 28131857 (+)
Sequence length	982
RNA-Seq Expression	Cmc11g0306561.1
Synteny	Cmc11g0306561.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCGTCCTCTCGACCCTTTCCCTCCGGACAGTGTGAAGAACAGTGTTGTATTTTCCGTTTTCAGGAACGAAAGCAGTTTCCTTTAATGGAAAATGGTAAGCCAATAACAACCATGTGCGCAGTGATAGCTATGGATTACACCAATTTCTGTTACAGAGTGTGTTCTATCTGTGAGAGAACACTTCCCGTTAACCCATCTTCTTCTCTTTGCAAATTCTGCAACTTCAACGCCTTTAATCCCGGTTCTTCTTCCTCTAAACGCGTCTTCCGTCTTCTTGTGAGTATTTCGGTTCTTTTCTTACTTGGGAATTTGATTTCAGTATGTTTGAAAATCTCTTATGATGTTCTTTTAGTTGGAATTCCCCTTGACATTTGCGTGGGGAAATTTTTTGGTTTTGTTTGCTTTTGAGTGTTAATTCATTGCGGGGACTCGATTATATGTTTCTTTTGGAGGAAATGTTTTGTTCTGTAAAATGGGTTTGGGTTTGTGCATTGCATTGTGTTCTTTAAATTGAGGTTCTGATTTTGGGTCCTGTATTTCCATTGTTTTTTGGGCAGATGTCAATTGCAACGGATAAGGAAGTACAAACTGTAATATGCTTTGATAGGGTTGCTAAGGTTCTGTTTGGTTGCTCTGCTGATGAGTTTTTTGACTTTGCTAAGCTACATCCTTTTGCTGGTAAATCCCATTTGTATTTGTGAGTTACTTCTAATTGGTTTGCATGAGATTCTCCTTCAATGGACGTGAAGGATTGAGAACGAGACGCATTTTATAAAACTTTCATTAAACAACGTATCAAAAACAACCTAAACTAAAAGGCAGAGTCCCTTTGCCTAAGAGAAGATCCTCGGAGAATATGTTACTAATACAATTTGTGGGGAAATTTTTTAGTGACTTCCATGAAATGTAGCTCAATCTTCCTTCATCTAAGCTGTTTCGTTTCCTTTTGAATGCTAGTTGAATTTTTGTTGCGTACTGCAGCTGAAACTGTAAGTGAAATTCTGGTGGGAGAGATGTTTAGGATCACAATATCTAAACCAAAGAATGGCAATGCACAACACTCAAGAGTTGTCCAAATTGTTCCTCTGAGTTCATGTTTTCAACCAGCGATTATTAGACTGAGGGAATTGTATGGGTAAGAAGCTGCTGTTAATTTTCCTTTGTGATTAGTACTTACTTCTTATTATGCATTTTCCCACATGCCTTTTCTCTTTGTTGACAGACTATCATTTGTGGTTTGGGTTATTAGATGGGGTTCCAACTATCATCTAGGTTTGGGTTTTTAGATAATATAATTTTCTATCTTAAAACCAATTGACAATTAGAAGAGTAACTCACCCTTGATTTTTTTCATATCGGATCCTCAACACACTATTTCATGAAAATGCCTCTTTAGATTCACCATTCCTCGTCCCTTTTTGGACCGAATGCTCATTTAGCTTCCATGAGTTTTGATATCATATTAGATAACATAGGTTCACATCTCAAAATCAATTGACAACAAGAGAAAGTAACATATCTATCTTAGAAACATTGTGAGGTCCTTTGTTTTTCTGATATGGATCCTCAACCTGGGTGAATGTTTAGGCAACATATAAGATCCAAAATCTAAACAACTCTTGTGGATAAATGTAATATCTATTGATTGATGTAAAAATTATTTTTACCATAAAAAAGGTGTATAATGCGCTGAAGATCACTATTTCAGATATTAGGGAATTAAGATGCATCAATACTTATTAATATAGGGAGGGAGGAAAGTAAAACAAGCTAGTTCCTTGTAGGTGTTCTAAGAGAGATAAGGAAGCACTTAAATTCTCCTTAGCTGTTTTGTTGTAGTTTTTGATTATTTCGTAGGGTGTATCTATAGCGAAGGACATATGTAGAAATAAGATTTATCGAAGTGGTTTTGGGATTGCATGTTCTAATGTGGAACTACAATAACTTGATATTGAATTATGATGAGAGAAGACTCATGTTAAGCTCCGACTTACGAAATAATCTGGTGTCGTTTACATCTTTAATTGTAAAGCCCAATCCTTTTGCTTTTCCACCAAACAAGAGAGCTAGTATAACACTGTCTTCGCTCGGTGAGCGTCGGTGGAGCTGCACTATGGGATTGTCATTTTATCCATCCAAAGAAAAAAGAAGCATCAAATTCAAGGCTGTCCCTTCATCTAACCTCCTTTCTTCTTTGTCAAATGTTACAAAATTGAGCTTAAATGAACAGATGTGTGAAATTGCCCCTTCTGCTTCTTTATCTTTTCAATTTAGTTATGTATAGTGCTCAAGCATCTCCTCTCAAGTCTCTTGACATTGTAGCAGCCACTGGTCAAATCTGTTCCTCTTGTTGCTCTCTTGTTTGTATCCCTTGTTCTGAAACAGTTACACTTCATAGATATTCCTTGAGTTCAATACTGATCGAACTGATATTTTTTACGAGTTCCGTAAGAACAAAATTTAGGATTTAAATTACAAAAGTTACTCCAAAAGAGAGTTGAAATTGAAATCACTGGTGTAGAATATGATAGACCAGTTAGTTTTTCTTGAATTGTTTTTGGTCAGGTATCTCATGGTATATATTTTTATAGTTGAAATATGCATCTCTAATTTTTTTTAAAAAAAAGTTGGAAATATACATACAAATGTGTACTTGATTTTGTTTGCAGAGTAAATTCCAATTGATAACTATGGTTTCATTTGCTGTTGGTAATGGACAAAACAAGCAGTGGTTCCATAAAGTAAAAGAGATGTGATGTGGGCACCTCAAAATAACCTAATCCCATCCCATCCCAAGATTGTTTGCATCCTTTTCTTTCATTTAGAGTGGACAATATTTTGTTATTTGATGTGATTTTGTGTGCAGTGGAGAGGATTATTGTAACTTCAAAGGAAGAAAGAAGGTAGGTAAACAGTCGCAAACGTATTTGAATTAGTTTTAATTGCGTTTACTTAAATATTTTGTAAACTGATTATGTCTTCTTATTTTACCGTCACATATTAGGTATATCGATAACAATAACACAACAATAATTGTGAAATTTTCGTAATTTTTTTATTGGTTTTTATATTTCTTTAATTTTAACGGTAATTTGTAT

mRNA sequence

TTTCGTCCTCTCGACCCTTTCCCTCCGGACAGTGTGAAGAACAGTGTTGTATTTTCCGTTTTCAGGAACGAAAGCAGTTTCCTTTAATGGAAAATGGTAAGCCAATAACAACCATGTGCGCAGTGATAGCTATGGATTACACCAATTTCTGTTACAGAGTGTGTTCTATCTGTGAGAGAACACTTCCCGTTAACCCATCTTCTTCTCTTTGCAAATTCTGCAACTTCAACGCCTTTAATCCCGGTTCTTCTTCCTCTAAACGCGTCTTCCGTCTTCTTATGTCAATTGCAACGGATAAGGAAGTACAAACTGTAATATGCTTTGATAGGGTTGCTAAGGTTCTGTTTGGTTGCTCTGCTGATGAGTTTTTTGACTTTGCTAAGCTACATCCTTTTGCTGCTGAAACTGTAAGTGAAATTCTGGTGGGAGAGATGTTTAGGATCACAATATCTAAACCAAAGAATGGCAATGCACAACACTCAAGAGTTGTCCAAATTGTTCCTCTGAGTTCATGTTTTCAACCAGCGATTATTAGACTGAGGGAATTGTATGGAGTAAATTCCAATTGATAACTATGGTTTCATTTGCTGTTGGTAATGGACAAAACAAGCAGTGGTTCCATAAAGTAAAAGAGATGTGATGTGGGCACCTCAAAATAACCTAATCCCATCCCATCCCAAGATTGTTTGCATCCTTTTCTTTCATTTAGAGTGGACAATATTTTGTTATTTGATGTGATTTTGTGTGCAGTGGAGAGGATTATTGTAACTTCAAAGGAAGAAAGAAGGTAGGTAAACAGTCGCAAACGTATTTGAATTAGTTTTAATTGCGTTTACTTAAATATTTTGTAAACTGATTATGTCTTCTTATTTTACCGTCACATATTAGGTATATCGATAACAATAACACAACAATAATTGTGAAATTTTCGTAATTTTTTTATTGGTTTTTATATTTCTTTAATTTTAACGGTAATTTGTAT

Coding sequence (CDS)

ATGGAAAATGGTAAGCCAATAACAACCATGTGCGCAGTGATAGCTATGGATTACACCAATTTCTGTTACAGAGTGTGTTCTATCTGTGAGAGAACACTTCCCGTTAACCCATCTTCTTCTCTTTGCAAATTCTGCAACTTCAACGCCTTTAATCCCGGTTCTTCTTCCTCTAAACGCGTCTTCCGTCTTCTTATGTCAATTGCAACGGATAAGGAAGTACAAACTGTAATATGCTTTGATAGGGTTGCTAAGGTTCTGTTTGGTTGCTCTGCTGATGAGTTTTTTGACTTTGCTAAGCTACATCCTTTTGCTGCTGAAACTGTAAGTGAAATTCTGGTGGGAGAGATGTTTAGGATCACAATATCTAAACCAAAGAATGGCAATGCACAACACTCAAGAGTTGTCCAAATTGTTCCTCTGAGTTCATGTTTTCAACCAGCGATTATTAGACTGAGGGAATTGTATGGAGTAAATTCCAATTGA

Protein sequence

MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPVNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKEVQTVICFDRVAKVLFGCSADEFFDFAKLHPFAAETVSEILVGEMFRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN

Homology

[Close]

BLAST of Cmc11g0306561.1 vs. NCBI nr
Match: XP_008465398.1 (PREDICTED: uncharacterized protein LOC103503028 [Cucumis melo])

HSP 1 Score: 327.4 bits (838), Expect = 6.9e-86
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPVNPSSSLCKFCNFNAFNPGSSSSKRV 60
           MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPVNPSSSLCKFCNFNAFNPGSSSSKRV
Sbjct: 1   MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPVNPSSSLCKFCNFNAFNPGSSSSKRV 60

Query: 61  FRLLMSIATDKEVQTVICFDRVAKVLFGCSADEFFDFAKLHPFAAETVSEILVGEMFRIT 120
           FRLLMSIATDKEVQTVICFDRVAKVLFGCSADEFFDFAKLHPFAAETVSEILVGEMFRIT
Sbjct: 61  FRLLMSIATDKEVQTVICFDRVAKVLFGCSADEFFDFAKLHPFAAETVSEILVGEMFRIT 120

Query: 121 ISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN 161
           ISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN
Sbjct: 121 ISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN 160

[Close]

BLAST of Cmc11g0306561.1 vs. NCBI nr
Match: KGN46888.2 (hypothetical protein Csa_020864 [Cucumis sativus])

HSP 1 Score: 313.2 bits (801), Expect = 1.3e-81
Identity = 154/160 (96.25%), Postives = 157/160 (98.12%), Query Frame = 0


Query: 1   MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPVNPSSSLCKFCNFNAFNPGSSSSKRV 60
           MENGKPITTMCAV+AMDYTNFCYRVCSICERTLPVNP SSLCKFCNFNAFNPGSSSSKRV
Sbjct: 1   MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNP-SSLCKFCNFNAFNPGSSSSKRV 60

Query: 61  FRLLMSIATDKEVQTVICFDRVAKVLFGCSADEFFDFAKLHPFAAETVSEILVGEMFRIT 120
           FRLLMSIATDK+VQTVICFDRVA+VLFGCSADEFFDFAKLHPFAAETVSEIL GEM RIT
Sbjct: 61  FRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAETVSEILEGEMLRIT 120

Query: 121 ISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN 161
           ISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN
Sbjct: 121 ISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN 159

[Close]

BLAST of Cmc11g0306561.1 vs. NCBI nr
Match: XP_031742644.1 (uncharacterized protein LOC101220454 [Cucumis sativus])

HSP 1 Score: 305.8 bits (782), Expect = 2.1e-79
Identity = 154/168 (91.67%), Postives = 157/168 (93.45%), Query Frame = 0


Query: 1   MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPVNPSSSLCKFCNFNAFNPGSSSSKRV 60
           MENGKPITTMCAV+AMDYTNFCYRVCSICERTLPVNP SSLCKFCNFNAFNPGSSSSKRV
Sbjct: 1   MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNP-SSLCKFCNFNAFNPGSSSSKRV 60

Query: 61  FRLLMSIATDKEVQTVICFDRVAKVLFGCSADEFFDFAKLHPF--------AAETVSEIL 120
           FRLLMSIATDK+VQTVICFDRVA+VLFGCSADEFFDFAKLHPF        AAETVSEIL
Sbjct: 61  FRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAVEILLRTAAETVSEIL 120

Query: 121 VGEMFRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN 161
            GEM RITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN
Sbjct: 121 EGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN 167

[Close]

BLAST of Cmc11g0306561.1 vs. NCBI nr
Match: KAA0037314.1 (uncharacterized protein E6C27_scaffold3G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 300.4 bits (768), Expect = 9.0e-78
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 10  MCAVIAMDYTNFCYRVCSICERTLPVNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIAT 69
           MCAVIAMDYTNFCYRVCSICERTLPVNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIAT
Sbjct: 1   MCAVIAMDYTNFCYRVCSICERTLPVNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIAT 60

Query: 70  DKEVQTVICFDRVAKVLFGCSADEFFDFAKLHPFAAETVSEILVGEMFRITISKPKNGNA 129
           DKEVQTVICFDRVAKVLFGCSADEFFDFAKLHPFAAETVSEILVGEMFRITISKPKNGNA
Sbjct: 61  DKEVQTVICFDRVAKVLFGCSADEFFDFAKLHPFAAETVSEILVGEMFRITISKPKNGNA 120

Query: 130 QHSRVVQIVPLSSCFQPAIIRLRELYG 157
           QHSRVVQIVPLSSCFQPAIIRLRELYG
Sbjct: 121 QHSRVVQIVPLSSCFQPAIIRLRELYG 147

[Close]

BLAST of Cmc11g0306561.1 vs. NCBI nr
Match: XP_022943427.1 (uncharacterized protein LOC111448196 isoform X1 [Cucurbita moschata] >XP_022943428.1 uncharacterized protein LOC111448196 isoform X1 [Cucurbita moschata] >KAG7010655.1 hypothetical protein SDJN02_27450, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 292.0 bits (746), Expect = 3.2e-75
Identity = 141/157 (89.81%), Postives = 150/157 (95.54%), Query Frame = 0


Query: 1   MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPVNPSSSLCKFCNFNAFNPGSSSSKRV 60
           MEN KPITTMCAVIAMD+T+FCYRVCSICERTLP NP  SLCKFCNFNAFNPGSSSSKRV
Sbjct: 1   MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRV 60

Query: 61  FRLLMSIATDKEVQTVICFDRVAKVLFGCSADEFFDFAKLHPFAAETVSEILVGEMFRIT 120
           FR+LMSIATDK+VQTVICFDRVA+VLFGCSADEFFDFAKLHPFAAE VSEIL GEMFR+T
Sbjct: 61  FRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMT 120

Query: 121 ISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGV 158
           ISKPKNGNAQHSRVVQ+VPLSS FQPAI+RLRELYG+
Sbjct: 121 ISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGL 157

[Close]

BLAST of Cmc11g0306561.1 vs. ExPASy TrEMBL
Match: A0A1S3CNQ4 (uncharacterized protein LOC103503028 OS=Cucumis melo OX=3656 GN=LOC103503028 PE=4 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 3.3e-86
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPVNPSSSLCKFCNFNAFNPGSSSSKRV 60
           MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPVNPSSSLCKFCNFNAFNPGSSSSKRV
Sbjct: 1   MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPVNPSSSLCKFCNFNAFNPGSSSSKRV 60

Query: 61  FRLLMSIATDKEVQTVICFDRVAKVLFGCSADEFFDFAKLHPFAAETVSEILVGEMFRIT 120
           FRLLMSIATDKEVQTVICFDRVAKVLFGCSADEFFDFAKLHPFAAETVSEILVGEMFRIT
Sbjct: 61  FRLLMSIATDKEVQTVICFDRVAKVLFGCSADEFFDFAKLHPFAAETVSEILVGEMFRIT 120

Query: 121 ISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN 161
           ISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN
Sbjct: 121 ISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN 160

[Close]

BLAST of Cmc11g0306561.1 vs. ExPASy TrEMBL
Match: A0A0A0KEN7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G147650 PE=4 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 1.8e-79
Identity = 150/156 (96.15%), Postives = 153/156 (98.08%), Query Frame = 0


Query: 1   MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPVNPSSSLCKFCNFNAFNPGSSSSKRV 60
           MENGKPITTMCAV+AMDYTNFCYRVCSICERTLPVNP SSLCKFCNFNAFNPGSSSSKRV
Sbjct: 1   MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNP-SSLCKFCNFNAFNPGSSSSKRV 60

Query: 61  FRLLMSIATDKEVQTVICFDRVAKVLFGCSADEFFDFAKLHPFAAETVSEILVGEMFRIT 120
           FRLLMSIATDK+VQTVICFDRVA+VLFGCSADEFFDFAKLHPFAAETVSEIL GEM RIT
Sbjct: 61  FRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAETVSEILEGEMLRIT 120

Query: 121 ISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG 157
           ISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG
Sbjct: 121 ISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG 155

[Close]

BLAST of Cmc11g0306561.1 vs. ExPASy TrEMBL
Match: A0A5A7T1G5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold3G00270 PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 4.4e-78
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 10  MCAVIAMDYTNFCYRVCSICERTLPVNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIAT 69
           MCAVIAMDYTNFCYRVCSICERTLPVNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIAT
Sbjct: 1   MCAVIAMDYTNFCYRVCSICERTLPVNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIAT 60

Query: 70  DKEVQTVICFDRVAKVLFGCSADEFFDFAKLHPFAAETVSEILVGEMFRITISKPKNGNA 129
           DKEVQTVICFDRVAKVLFGCSADEFFDFAKLHPFAAETVSEILVGEMFRITISKPKNGNA
Sbjct: 61  DKEVQTVICFDRVAKVLFGCSADEFFDFAKLHPFAAETVSEILVGEMFRITISKPKNGNA 120

Query: 130 QHSRVVQIVPLSSCFQPAIIRLRELYG 157
           QHSRVVQIVPLSSCFQPAIIRLRELYG
Sbjct: 121 QHSRVVQIVPLSSCFQPAIIRLRELYG 147

[Close]

BLAST of Cmc11g0306561.1 vs. ExPASy TrEMBL
Match: A0A6J1FWW9 (uncharacterized protein LOC111448196 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111448196 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 1.5e-75
Identity = 141/157 (89.81%), Postives = 150/157 (95.54%), Query Frame = 0


Query: 1   MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPVNPSSSLCKFCNFNAFNPGSSSSKRV 60
           MEN KPITTMCAVIAMD+T+FCYRVCSICERTLP NP  SLCKFCNFNAFNPGSSSSKRV
Sbjct: 1   MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRV 60

Query: 61  FRLLMSIATDKEVQTVICFDRVAKVLFGCSADEFFDFAKLHPFAAETVSEILVGEMFRIT 120
           FR+LMSIATDK+VQTVICFDRVA+VLFGCSADEFFDFAKLHPFAAE VSEIL GEMFR+T
Sbjct: 61  FRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMT 120

Query: 121 ISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGV 158
           ISKPKNGNAQHSRVVQ+VPLSS FQPAI+RLRELYG+
Sbjct: 121 ISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGL 157

[Close]

BLAST of Cmc11g0306561.1 vs. ExPASy TrEMBL
Match: A0A6J1FXT2 (uncharacterized protein LOC111448196 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111448196 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 1.5e-75
Identity = 141/157 (89.81%), Postives = 150/157 (95.54%), Query Frame = 0


Query: 1   MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPVNPSSSLCKFCNFNAFNPGSSSSKRV 60
           MEN KPITTMCAVIAMD+T+FCYRVCSICERTLP NP  SLCKFCNFNAFNPGSSSSKRV
Sbjct: 1   MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRV 60

Query: 61  FRLLMSIATDKEVQTVICFDRVAKVLFGCSADEFFDFAKLHPFAAETVSEILVGEMFRIT 120
           FR+LMSIATDK+VQTVICFDRVA+VLFGCSADEFFDFAKLHPFAAE VSEIL GEMFR+T
Sbjct: 61  FRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMT 120

Query: 121 ISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGV 158
           ISKPKNGNAQHSRVVQ+VPLSS FQPAI+RLRELYG+
Sbjct: 121 ISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGL 157

[Close]

BLAST of Cmc11g0306561.1 vs. TAIR 10
Match: AT2G28105.1 (CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Replication factor A, C-terminal (InterPro:IPR013955); Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 168.7 bits (426), Expect = 3.8e-42
Identity = 83/157 (52.87%), Postives = 110/157 (70.06%), Query Frame = 0


Query: 8   TTMCAVIAMDYTNFCYRVCSICERTLPVN----PSSSLCKFCNFNAFNPGSSSSKRVFRL 67
           T +C ++A+D T++CYRVCS C+R LP +     SSS CKFC        S   K ++R+
Sbjct: 6   TVLCTLLAVDLTDYCYRVCSRCQRVLPSDNNGFASSSFCKFCK-------SKEPKLLYRI 65

Query: 68  LMSIATDKEVQTVICFDRVAKVLFGCSADEFFDFAKLHPFAAETVSEILVGEMFRITISK 127
           LMSIATD  V+TVICFDR A VLFGCSADEFF F KL+P AA  V+++  GEM R+T+++
Sbjct: 66  LMSIATDASVKTVICFDRAATVLFGCSADEFFHFTKLNPLAASMVNQVFDGEMLRMTLTR 125

Query: 128 PKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN 161
           P+N NAQH RV  +VPL S  QPAI+ LR++   N++
Sbjct: 126 PQNRNAQHMRVASVVPLRSGVQPAIVTLRQICTKNAS 155

The following BLAST results are available for this feature:

BLAST of Cmc11g0306561.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008465398.1	6.9e-86	100.00	PREDICTED: uncharacterized protein LOC103503028 [Cucumis melo]	[more]
KGN46888.2	1.3e-81	96.25	hypothetical protein Csa_020864 [Cucumis sativus]	[more]
XP_031742644.1	2.1e-79	91.67	uncharacterized protein LOC101220454 [Cucumis sativus]	[more]
KAA0037314.1	9.0e-78	100.00	uncharacterized protein E6C27_scaffold3G00270 [Cucumis melo var. makuwa]	[more]
XP_022943427.1	3.2e-75	89.81	uncharacterized protein LOC111448196 isoform X1 [Cucurbita moschata] >XP_0229434...	[more]

BLAST of Cmc11g0306561.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc11g0306561.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CNQ4	3.3e-86	100.00	uncharacterized protein LOC103503028 OS=Cucumis melo OX=3656 GN=LOC103503028 PE=...	[more]
A0A0A0KEN7	1.8e-79	96.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G147650 PE=4 SV=1	[more]
A0A5A7T1G5	4.4e-78	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A6J1FWW9	1.5e-75	89.81	uncharacterized protein LOC111448196 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1FXT2	1.5e-75	89.81	uncharacterized protein LOC111448196 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Cmc11g0306561.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G28105.1	3.8e-42	52.87	CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR0160...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 1..143 e-value: 3.0E-14 score: 54.7
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 4..121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc11g0306561	Cmc11g0306561	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0306561.1-exon	Cmc11g0306561.1-exon-CMiso1.1chr11:28128758..28129035	exon
Cmc11g0306561.1-exon	Cmc11g0306561.1-exon-CMiso1.1chr11:28129317..28129437	exon
Cmc11g0306561.1-exon	Cmc11g0306561.1-exon-CMiso1.1chr11:28129741..28129894	exon
Cmc11g0306561.1-exon	Cmc11g0306561.1-exon-CMiso1.1chr11:28131429..28131857	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0306561.1-five_prime_utr	Cmc11g0306561.1-five_prime_utr-CMiso1.1chr11:28128758..28128843	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0306561.1-cds	Cmc11g0306561.1-cds-CMiso1.1chr11:28128844..28129035	CDS
Cmc11g0306561.1-cds	Cmc11g0306561.1-cds-CMiso1.1chr11:28129317..28129437	CDS
Cmc11g0306561.1-cds	Cmc11g0306561.1-cds-CMiso1.1chr11:28129741..28129894	CDS
Cmc11g0306561.1-cds	Cmc11g0306561.1-cds-CMiso1.1chr11:28131429..28131444	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0306561.1-three_prime_utr	Cmc11g0306561.1-three_prime_utr-CMiso1.1chr11:28131445..28131857	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc11g0306561.1	Cmc11g0306561.1-protein	polypeptide