Cmc11g0306331.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc11g0306331.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Unknown protein
Location	CMiso1.1chr11: 27840704 .. 27844680 (-)
Sequence length	2167
RNA-Seq Expression	Cmc11g0306331.1
Synteny	Cmc11g0306331.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTATGCATATCTCCATCTAAGGTACAAATAATTCTTTTCCACATTTTGGACTTAAAATGGAGAATTTGACAAGAAAGATGAAAATATCTATCGAGGAGCAAGTGACATTGACAAGTTGGCAAGGTTTACCAAATTATCAGACCAAATTTTTGACTCTATATACAACTTGGAAATCTTGTTTGCCACGTGGGCCATATTAGGCCGCTTAGCTGGATCCACGTCGACACATCGAATAGCCAATCGAGTAATCTTTTCCGCGACGCGTATCGGAAATGAGTCCTTAAGCCTACGGTCTACCCACTTTCTCAACCTCCCTTCCACGTCATCACCACCACCACCTTCTTCGATTACCGCCATGGCACTCTCAACCAAAGAAACCCTAACGAAATTCCCTTTCCTTCTATCAAATTCGAACTTCACGGGCTCTTCACCAGTCAACAGCTCTAAGATCACGACGCCAAATGCATACACGTCCGTCATCGGCGTTGCTACGCCGCTGGATTTGTACTCCGGCGCCATGTATCCTCTAACCCCTTTTATCTGTACTTTCTTCGATTTCAGCCGCAGTTGCTTCTCTTTCAACTCCATTTTCTTCTTTGAGTTTTCGAAAATTTCGCTAGAAGGTTTTTCAATTCTTTTATTCCAATCATCCTCATTACAGAGTTGCGCTACACCAAAATGACAAATTCTCGCGTTAAACGAAGGCTCTGTTACTATAATACTGCTACTCTTTATGTGATTATGCGTTAAACTGATGTTGATTCCTGATTTGTTATGGATGTAATCGAGTCCGTGTGCCAAATCTGTAGCGACTTGCATTCTGGAAATCCAACTGGATAAAACAGTGAAATTAGGGGTTTTGGAGCTTCTCAAACAATCGGAGAGCTTAGCTCCATTTACGAAATTGTAAACCAAATAGAGATAATCGGCAGAGATAGAAATGCCGAGGAGTTGAATTATACTGGTATGGTGACACAGACAGATCTTGTAGAAGCGATCTTTAAACTGTTGAAGGCCGATTTGAGGCTGGAACTTGCGTTGGAAGATGATGACATCCTTGCCATGAAGTGTGCAGCGCCAGGAGGGAGTGGAAGATGCGGTGGAGATTCGGTTGGTGAGGAAATTGTTGGTGGCGGCGATGATTTCAGAGAAATCGAAGACGTGAGGAGATTCGGGGAGAGATTCATGGAGGGTGGAGAAGGAGGTGGTTGAAGAAGAAATGGAAGGGAAGTTGTTAGTGTTAAATAATGCGGAATTATTCTTGGAAGGGGAAGATGATTTTCCATTGAAGAGTTTAGAAGGAGAGAAGGGAGGGGTTGGATCAATCTCTGCAACATCGAGCGCCATTGTTGGTTGGTTATACACATAAAAGGAATGAGGAAGAAGACGATAGTGAAGCCCTTTTCTCGTAGGAACGAATTACTCGTAAGGTATGTTCTACAATTTGGTACCTTCATTTTTATATAAAAGTTGCATGCATCATTCTTCAACTTCAAACCATTATGAATAATAAAATAACTAAATTAAAGTCTAATGTTTTGTTAGGTGATAAATTATTTTATTTCTAATTATATTAATTATTTTTGGGTGATGCAAAAAGATTTGTGATCAACTTCTTTTGCATTGCAATTTGAAATTTATTTTAAGAAAATTATCCTTATGATCAAATTCTTTTCTCTAAATTGTTTCAAAAGATTTTTCAAAGTATAAAACTTGAAATTTGTATGTTATATAATACACACTTCAAAATAAATCATTTCTTATCTTAATAATATTATTGGTACTTATAAGGGTAATTATAATATGTAGAATAATTATTAAGTATGTAACAATATTTTTAAAAAATTGCAAATATAGCAAAGTCTATCAGTAATAAAGTCTATCGTTATGGTTTATCAGTGATAGACCAACATTTGCTACATGGTTTATTAGTGATAGATTCCTATCATTGATAGATTTTGACAAGTTTTGCTATATTTGCAATTTTTTTTAAAATGTCGCTGTATACTTAATTATTTTGAATATAATTGCTACATTTGCAATTATCCCTGATTATAATGACAATTTTCTGAATAAAGATGAAGTAAATAACAATATTTTAAGAAAATTGCTAATATAACAAAGTTTGTTATGATAGACTTTTAATAAACTCTTATCATTTATTAATAGACTAATATTTGCAATATAATGTATCACTAATATTTGCAATAAAATCTATAAGTTATATACTCTATTATTTATAAATTTTAACAGATTTTACCATGTTTGTAACTTTTTTAAAATGTTATATATTTACTCATTTTGAATCTAATTTATATATTTGTAATTATTACTAATATTATTTTGCATTTTAAGTTCTCCCGGTTCAACTGGAACAAAGTATTTATGGGCCACTCCACTTCTTAGAAACTTCTAATTTGTCAACCACAAATTTAGATTTTTGTACTTTACAGTTTGTGTAATCTCTAATCTGTAAAATCTTCAAAATTATAAATTTAATTGGCGAAGAGTTTTTCTTTTTTTAAACTTATGAGTTTACTAAATATAAAAATGAAAATTTAAGTTTCCATTTGACGTAAAATTTAAATTCATATGGATTAATTTAAAAAATTTGTTAGAATATCAATTCGAAGATATAAAAATTTCGAATGGTAAACATATTAAACTATGTTTAAAATTTTGAAAAACAAATAGATAGAAATTTTAAATTTAAAAGAGTTGAACTTGTAATTTAACAAACTTATATAATTTAAATGCATCCATCCATTAGAAGCTGGAAGGAGATTTTGTCTACAATAAAATAAACAACTATCACTTTAATAAATAAACAAATAAATGAAATAACTTGTACGGCTGTTTTGTGACTGTAACATATCCATTTTGACTAAAAAACAAAATTTATATATATATATAAAAAATAGAATGAAAGAAAAAGTTAAACTGAAAGCTACAAATATATAAAATCAATTTAGATAATTCAACTTAACAACGAAGATTATGAGTGAAACAATTTTGATCACTTATTAGTAACCATTTTTAACATAAAAGTATCTGAGTAACATTGTTATTTTCCCTAACGACTATCCACTCGATTGATAATATTTTATCTAATGTTTACTTTTAATTGAGATCTTAGTTGTTTAGATTTTTAATTGGTTCAAAAAATAAAAAGTAAGAATTAAAGTGATTCTCCTTGTAAAACTCTCCTAAAAACAAACAGAACTTTCTTGATCATTGTAGAGTTCGGGCTAAAGCTTCAGAGTCCGGCAACACAAAATATATGGGCCGAGCCCGGGGCTTGGACAAAGCGGCCCATATAATTGGGGTAAGGTGAACAAAACTTCTTTTTTCAAAGTTAAAAGAAAAATGTGAAATTAATAATTTAGTCAAAGAAACTTTATTAGATAATCTACTTTAATCGTTTTTAGTTTTTAAAAATTAAAGTTTTACTCTCCCAAGTTTTTACTTTTGAAGTACAGGAATTCTAAAAATAAAAATAAGTTTTTAAAACTATTTATTTTCGTTTCTAGAATTTGGCTTTGTTTGTTTTTTAAAAATATTAGTAAGAGTATATTATAAAGAAAAATATATAGAATCAATTTTCTTTTTTAAGAATATTTTTCTTAGAAAAATCAAATGGTTACAAACGTGGAAATTTACAATAGTTTAGTCAGTGTGGAAAAACAACGTCAAATTTAAGTGTCATAACAAATTAATCTTTATAGTTTGCAAATGAATTTTGATTCTTAATTAGTTTACCAATTCATTAAATCATAATAGTAATTTTCACAATAGAGCTAAATTCAACTAAATATTAAAAAAACTAAATTGTTTAAGTCTACATTATTTAAATTTTAAAATAAATAAGTTGAGTGAAACATAATATTGTAAATCAAATTTTTAGCGACGTATGCATACGATAGAAACAACTATATATTATTGTTATTAAATTTATATTGGAACTTATGTGTATTCG

mRNA sequence

TCTATGCATATCTCCATCTAAGGTACAAATAATTCTTTTCCACATTTTGGACTTAAAATGGAGAATTTGACAAGAAAGATGAAAATATCTATCGAGGAGCAAGTGACATTGACAAGTTGGCAAGGTTTACCAAATTATCAGACCAAATTTTTGACTCTATATACAACTTGGAAATCTTGTTTGCCACGTGGGCCATATTAGGCCGCTTAGCTGGATCCACGTCGACACATCGAATAGCCAATCGAGTAATCTTTTCCGCGACGCGTATCGGAAATGAGTCCTTAAGCCTACGGTCTACCCACTTTCTCAACCTCCCTTCCACGTCATCACCACCACCACCTTCTTCGATTACCGCCATGGCACTCTCAACCAAAGAAACCCTAACGAAATTCCCTTTCCTTCTATCAAATTCGAACTTCACGGGCTCTTCACCAGTCAACAGCTCTAAGATCACGACGCCAAATGCATACACGTCCGTCATCGGCGTTGCTACGCCGCTGGATTTGTACTCCGGCGCCATGTATCCTCTAACCCCTTTTATCTGTACTTTCTTCGATTTCAGCCGCAGTTGCTTCTCTTTCAACTCCATTTTCTTCTTTGAGTTTTCGAAAATTTCGCTAGAAGGTTTTTCAATTCTTTTATTCCAATCATCCTCATTACAGAGTTGCGCTACACCAAAATGACAAATTCTCGCGTTAAACGAAGGCTCTGTTACTATAATACTGCTACTCTTTATGTGATTATGCGTTAAACTGATGTTGATTCCTGATTTGTTATGGATGTAATCGAGTCCGTGTGCCAAATCTGTAGCGACTTGCATTCTGGAAATCCAACTGGATAAAACAGTGAAATTAGGGGTTTTGGAGCTTCTCAAACAATCGGAGAGCTTAGCTCCATTTACGAAATTGTAAACCAAATAGAGATAATCGGCAGAGATAGAAATGCCGAGGAGTTGAATTATACTGGTATGGTGACACAGACAGATCTTGTAGAAGCGATCTTTAAACTGTTGAAGGCCGATTTGAGGCTGGAACTTGCGTTGGAAGATGATGACATCCTTGCCATGAAGTGTGCAGCGCCAGGAGGGAGTGGAAGATGCGGTGGAGATTCGGTTGGTGAGGAAATTGTTGGTGGCGGCGATGATTTCAGAGAAATCGAAGACGTGAGGAGATTCGGGGAGAGATTCATGGAGGGTGGAGAAGGAGGTGGTTGAAGAAGAAATGGAAGGGAAGTTGTTAGTGTTAAATAATGCGGAATTATTCTTGGAAGGGGAAGATGATTTTCCATTGAAGAGTTTAGAAGGAGAGAAGGGAGGGGTTGGATCAATCTCTGCAACATCGAGCGCCATTGTTGGTTGGTTATACACATAAAAGGAATGAGGAAGAAGACGATAGTGAAGCCCTTTTCTCGTAGGAACGAATTACTCGTAAGAGTTCGGGCTAAAGCTTCAGAGTCCGGCAACACAAAATATATGGGCCGAGCCCGGGGCTTGGACAAAGCGGCCCATATAATTGGGGTAAGGTGAACAAAACTTCTTTTTTCAAAGTTAAAAGAAAAATGTGAAATTAATAATTTAGTCAAAGAAACTTTATTAGATAATCTACTTTAATCGTTTTTAGTTTTTAAAAATTAAAGTTTTACTCTCCCAAGTTTTTACTTTTGAAGTACAGGAATTCTAAAAATAAAAATAAGTTTTTAAAACTATTTATTTTCGTTTCTAGAATTTGGCTTTGTTTGTTTTTTAAAAATATTAGTAAGAGTATATTATAAAGAAAAATATATAGAATCAATTTTCTTTTTTAAGAATATTTTTCTTAGAAAAATCAAATGGTTACAAACGTGGAAATTTACAATAGTTTAGTCAGTGTGGAAAAACAACGTCAAATTTAAGTGTCATAACAAATTAATCTTTATAGTTTGCAAATGAATTTTGATTCTTAATTAGTTTACCAATTCATTAAATCATAATAGTAATTTTCACAATAGAGCTAAATTCAACTAAATATTAAAAAAACTAAATTGTTTAAGTCTACATTATTTAAATTTTAAAATAAATAAGTTGAGTGAAACATAATATTGTAAATCAAATTTTTAGCGACGTATGCATACGATAGAAACAACTATATATTATTGTTATTAAATTTATATTGGAACTTATGTGTATTCG

Coding sequence (CDS)

ATGGTGACACAGACAGATCTTGTAGAAGCGATCTTTAAACTGTTGAAGGCCGATTTGAGGCTGGAACTTGCGTTGGAAGATGATGACATCCTTGCCATGAAGTGTGCAGCGCCAGGAGGGAGTGGAAGATGCGGTGGAGATTCGGTTGGTGAGGAAATTGTTGGTGGCGGCGATGATTTCAGAGAAATCGAAGACGTGAGGAGATTCGGGGAGAGATTCATGGAGGGTGGAGAAGGAGGTGGTTGA

Protein sequence

MVTQTDLVEAIFKLLKADLRLELALEDDDILAMKCAAPGGSGRCGGDSVGEEIVGGGDDFREIEDVRRFGERFMEGGEGGG

Homology

[Close]

BLAST of Cmc11g0306331.1 vs. NCBI nr
Match: RDX88177.1 (hypothetical protein CR513_30266, partial [Mucuna pruriens])

HSP 1 Score: 63.2 bits (152), Expect = 1.2e-06
Identity = 39/80 (48.75%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 1   MVTQTDLVEAIFKLLKADLRLELALEDDDILAMKCAAPGGSGRCGGDSVGEEIVGGGDDF 60
           +V   D  E + +L   +   ELALED+D+ A + AAP G G  GG ++ EE+VGGG DF
Sbjct: 225 VVAPADDGEELLELRGLEFAAELALEDNDVGAAEVAAPAGGG--GGVALREEVVGGGADF 284

Query: 61  REIEDVRRFGERFMEGGEGG 81
            E+ DVR F ER  EG EGG
Sbjct: 285 GEVVDVRVFRERVAEGSEGG 302

[Close]

BLAST of Cmc11g0306331.1 vs. ExPASy TrEMBL
Match: A0A371GC89 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_30266 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.9e-07
Identity = 39/80 (48.75%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 1   MVTQTDLVEAIFKLLKADLRLELALEDDDILAMKCAAPGGSGRCGGDSVGEEIVGGGDDF 60
           +V   D  E + +L   +   ELALED+D+ A + AAP G G  GG ++ EE+VGGG DF
Sbjct: 225 VVAPADDGEELLELRGLEFAAELALEDNDVGAAEVAAPAGGG--GGVALREEVVGGGADF 284

Query: 61  REIEDVRRFGERFMEGGEGG 81
            E+ DVR F ER  EG EGG
Sbjct: 285 GEVVDVRVFRERVAEGSEGG 302

[Close]

BLAST of Cmc11g0306331.1 vs. ExPASy TrEMBL
Match: A0A540LES4 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_029607 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 6.1e-04
Identity = 34/73 (46.58%), Postives = 43/73 (58.90%), Query Frame = 0


Query: 9  EAIFKLLKADLRLELALEDDDILAMKCAAPGGSGRCGGD-SVGEEIVGGGDDFREIEDVR 68
          EA  ++ + D     ALEDD +   K AAPGG G  GG+ +VGEE+ GGG D  E+ D+ 
Sbjct: 24 EAALEVGEGDGDAGFALEDDGVFRSKGAAPGGGGGGGGEAAVGEEVGGGGADLGEVVDLG 83

Query: 69 RFGERFMEGGEGG 81
           F E   EG EGG
Sbjct: 84 VFREGGFEGSEGG 96

The following BLAST results are available for this feature:

BLAST of Cmc11g0306331.1 vs. NCBI nr


Match Name	E-value	Identity	Description
RDX88177.1	1.2e-06	48.75	hypothetical protein CR513_30266, partial [Mucuna pruriens]	[more]

BLAST of Cmc11g0306331.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc11g0306331.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A371GC89	5.9e-07	48.75	Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_30266 P...	[more]
A0A540LES4	6.1e-04	46.58	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_029607 PE=4 SV=1	[more]

BLAST of Cmc11g0306331.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc11g0306331	Cmc11g0306331	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0306331.1-exon	Cmc11g0306331.1-exon-CMiso1.1chr11:27840704..27841439	exon
Cmc11g0306331.1-exon	Cmc11g0306331.1-exon-CMiso1.1chr11:27843250..27844680	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0306331.1-three_prime_utr	Cmc11g0306331.1-three_prime_utr-CMiso1.1chr11:27840704..27841439	three_prime_UTR
Cmc11g0306331.1-three_prime_utr	Cmc11g0306331.1-three_prime_utr-CMiso1.1chr11:27843250..27843467	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0306331.1-cds	Cmc11g0306331.1-cds-CMiso1.1chr11:27843468..27843713	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0306331.1-five_prime_utr	Cmc11g0306331.1-five_prime_utr-CMiso1.1chr11:27843714..27844680	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc11g0306331.1	Cmc11g0306331.1-protein	polypeptide