Cmc11g0305431.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc11g0305431.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr11: 26741840 .. 26742559 (-)
Sequence length	720
RNA-Seq Expression	Cmc11g0305431.1
Synteny	Cmc11g0305431.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGTCGAAGGAAAAGGTGAAAGCATGCCAGATTGAGATAGCAGGCCATGTGATTGAAGTAACGCTGTTAGTCCTGGATATGCTCGACTTTGATGTAATCCTGGGTATGGATTGGTTGGCCGCTAACCACGCTAGCATAGATTGTTCCCGTAAGGAGGTAACGTTTAACCCTTCCTCGATGGCCAGTTTTAAATTTAAGGGAGGAGGGTCAAGGTCGTTGCCTCAGGTAATCTCAGCCATCAGGGCCAGTAAACTGCTCAGTCAGGGTACTTGGGGTATCTTAGCGAGCGTGGTGGATACTAGAGAGGTCGATGTATCCCTGTCATCAGAACCGGTGGTGAGGGACTATCCGGATGTCTTTCCTGAAGAACTTCCAGGGTTACCTCCGCACAGAGAGGTTGAGTTTGCCATAGAGTTGGAGCCGGGCACGGTTCCTATATCCAGAGCCCCTTATAGGATGGCCCTCGCAGAGCTGAAAGAATTAAAGGTGCAGTTACAAGAATTGCTTGATAAGGGATTCATTCGACCGAGCGTGTCCCCTTGGGGTGCGCTAGTTTTATTTGTTAAGAAGAAGGATGGATCGATGCGTCTATGCATTGACTATAGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGAAGATCTATTTGACCAGTTGCAGGGAGCCACAGTGTTCTCTAAGATTGATCTTCGGTCATGA

mRNA sequence

ATGTTGTCGAAGGAAAAGGTGAAAGCATGCCAGATTGAGATAGCAGGCCATGTGATTGAAGTAACGCTGTTAGTCCTGGATATGCTCGACTTTGATGTAATCCTGGGTATGGATTGGTTGGCCGCTAACCACGCTAGCATAGATTGTTCCCGTAAGGAGGTAACGTTTAACCCTTCCTCGATGGCCAGTTTTAAATTTAAGGGAGGAGGGTCAAGGTCGTTGCCTCAGGTAATCTCAGCCATCAGGGCCAGTAAACTGCTCAGTCAGGGTACTTGGGGTATCTTAGCGAGCGTGGTGGATACTAGAGAGGTCGATGTATCCCTGTCATCAGAACCGGTGGTGAGGGACTATCCGGATGTCTTTCCTGAAGAACTTCCAGGGTTACCTCCGCACAGAGAGGTTGAGTTTGCCATAGAGTTGGAGCCGGGCACGGTTCCTATATCCAGAGCCCCTTATAGGATGGCCCTCGCAGAGCTGAAAGAATTAAAGGTGCAGTTACAAGAATTGCTTGATAAGGGATTCATTCGACCGAGCGTGTCCCCTTGGGGTGCGCTAGTTTTATTTGTTAAGAAGAAGGATGGATCGATGCGTCTATGCATTGACTATAGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGAAGATCTATTTGACCAGTTGCAGGGAGCCACAGTGTTCTCTAAGATTGATCTTCGGTCATGA

Coding sequence (CDS)

ATGTTGTCGAAGGAAAAGGTGAAAGCATGCCAGATTGAGATAGCAGGCCATGTGATTGAAGTAACGCTGTTAGTCCTGGATATGCTCGACTTTGATGTAATCCTGGGTATGGATTGGTTGGCCGCTAACCACGCTAGCATAGATTGTTCCCGTAAGGAGGTAACGTTTAACCCTTCCTCGATGGCCAGTTTTAAATTTAAGGGAGGAGGGTCAAGGTCGTTGCCTCAGGTAATCTCAGCCATCAGGGCCAGTAAACTGCTCAGTCAGGGTACTTGGGGTATCTTAGCGAGCGTGGTGGATACTAGAGAGGTCGATGTATCCCTGTCATCAGAACCGGTGGTGAGGGACTATCCGGATGTCTTTCCTGAAGAACTTCCAGGGTTACCTCCGCACAGAGAGGTTGAGTTTGCCATAGAGTTGGAGCCGGGCACGGTTCCTATATCCAGAGCCCCTTATAGGATGGCCCTCGCAGAGCTGAAAGAATTAAAGGTGCAGTTACAAGAATTGCTTGATAAGGGATTCATTCGACCGAGCGTGTCCCCTTGGGGTGCGCTAGTTTTATTTGTTAAGAAGAAGGATGGATCGATGCGTCTATGCATTGACTATAGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGAAGATCTATTTGACCAGTTGCAGGGAGCCACAGTGTTCTCTAAGATTGATCTTCGGTCATGA

Protein sequence

MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPSSMASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMALAELKELKVQLQELLDKGFIRPSVSPWGALVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIEDLFDQLQGATVFSKIDLRS

Homology

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BLAST of Cmc11g0305431.1 vs. NCBI nr
Match: KAA0047433.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 463.0 bits (1190), Expect = 1.6e-126
Identity = 235/239 (98.33%), Postives = 236/239 (98.74%), Query Frame = 0


Query: 1    MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPSS 60
            MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNP S
Sbjct: 910  MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPS 969

Query: 61   MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV 120
            MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV
Sbjct: 970  MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV 1029

Query: 121  FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMALAELKELKVQLQELLDKGFIRPSVS 180
            FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMA AELKELKVQLQELLDKGFIRPSVS
Sbjct: 1030 FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS 1089

Query: 181  PWGALVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIEDLFDQLQGATVFSKIDLRS 240
            PWGA VLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRI+DLFDQLQGATVFSKIDLRS
Sbjct: 1090 PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRS 1148

[Close]

BLAST of Cmc11g0305431.1 vs. NCBI nr
Match: KAA0031931.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 461.8 bits (1187), Expect = 3.5e-126
Identity = 234/239 (97.91%), Postives = 236/239 (98.74%), Query Frame = 0


Query: 1    MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPSS 60
            MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNP S
Sbjct: 799  MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPS 858

Query: 61   MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV 120
            MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV
Sbjct: 859  MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV 918

Query: 121  FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMALAELKELKVQLQELLDKGFIRPSVS 180
            FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMA AELKELKVQLQELLDKGFIRPS+S
Sbjct: 919  FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSMS 978

Query: 181  PWGALVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIEDLFDQLQGATVFSKIDLRS 240
            PWGA VLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRI+DLFDQLQGATVFSKIDLRS
Sbjct: 979  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRS 1037

[Close]

BLAST of Cmc11g0305431.1 vs. NCBI nr
Match: KAA0032356.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 461.1 bits (1185), Expect = 5.9e-126
Identity = 233/239 (97.49%), Postives = 235/239 (98.33%), Query Frame = 0


Query: 1   MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPSS 60
           MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWL ANHASIDCSRKEVTFNP S
Sbjct: 409 MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLVANHASIDCSRKEVTFNPPS 468

Query: 61  MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV 120
           MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV
Sbjct: 469 MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV 528

Query: 121 FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMALAELKELKVQLQELLDKGFIRPSVS 180
           FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMA AELKELKVQLQELLDKGFIRPSVS
Sbjct: 529 FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS 588

Query: 181 PWGALVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIEDLFDQLQGATVFSKIDLRS 240
           PWGA +LFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRI+DLFDQLQGATVFSKIDLRS
Sbjct: 589 PWGAPILFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRS 647

[Close]

BLAST of Cmc11g0305431.1 vs. NCBI nr
Match: KAA0063192.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 460.7 bits (1184), Expect = 7.8e-126
Identity = 233/239 (97.49%), Postives = 235/239 (98.33%), Query Frame = 0


Query: 1   MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPSS 60
           MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNP S
Sbjct: 300 MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPS 359

Query: 61  MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV 120
           MASFKFKGGGSRSLPQVIS IRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV
Sbjct: 360 MASFKFKGGGSRSLPQVISTIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV 419

Query: 121 FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMALAELKELKVQLQELLDKGFIRPSVS 180
           FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMA AE+KELKVQLQELLDKGFIRPSVS
Sbjct: 420 FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAEMKELKVQLQELLDKGFIRPSVS 479

Query: 181 PWGALVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIEDLFDQLQGATVFSKIDLRS 240
           PWGA VLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRI+DLFDQLQGATVFSKIDLRS
Sbjct: 480 PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRS 538

[Close]

BLAST of Cmc11g0305431.1 vs. NCBI nr
Match: KAA0040188.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 460.3 bits (1183), Expect = 1.0e-125
Identity = 234/239 (97.91%), Postives = 235/239 (98.33%), Query Frame = 0


Query: 1   MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPSS 60
           MLSKEKVKACQIEIA HVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNP S
Sbjct: 552 MLSKEKVKACQIEIADHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPS 611

Query: 61  MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV 120
           MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV
Sbjct: 612 MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV 671

Query: 121 FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMALAELKELKVQLQELLDKGFIRPSVS 180
           FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMA AELKELKVQLQELLDKGFIRPSVS
Sbjct: 672 FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS 731

Query: 181 PWGALVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIEDLFDQLQGATVFSKIDLRS 240
           PWGA VLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRI+DLFDQLQGATVFSKIDLRS
Sbjct: 732 PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRS 790

[Close]

BLAST of Cmc11g0305431.1 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 95.1 bits (235), Expect = 1.1e-18
Identity = 49/126 (38.89%), Postives = 75/126 (59.52%), Query Frame = 0


Query: 117 YPDVFPEELPGLPP---HREVEFAIELEPGTVPISRAPYRMALAELKELKVQLQELLDKG 176
           Y ++   +LP  P    +  V+  IE++PG       PY +     +E+   +Q+LLD  
Sbjct: 564 YREIIRNDLPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNK 623

Query: 177 FIRPSVSPWGALVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIEDLFDQLQGATVFS 236
           FI PS SP  + V+ V KKDG+ RLC+DYR LNK T+ + +PLPRI++L  ++  A +F+
Sbjct: 624 FIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFT 683

Query: 237 KIDLRS 240
            +DL S
Sbjct: 684 TLDLHS 689

[Close]

BLAST of Cmc11g0305431.1 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 95.1 bits (235), Expect = 1.1e-18
Identity = 49/126 (38.89%), Postives = 75/126 (59.52%), Query Frame = 0


Query: 117 YPDVFPEELPGLPP---HREVEFAIELEPGTVPISRAPYRMALAELKELKVQLQELLDKG 176
           Y ++   +LP  P    +  V+  IE++PG       PY +     +E+   +Q+LLD  
Sbjct: 590 YREIIRNDLPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNK 649

Query: 177 FIRPSVSPWGALVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIEDLFDQLQGATVFS 236
           FI PS SP  + V+ V KKDG+ RLC+DYR LNK T+ + +PLPRI++L  ++  A +F+
Sbjct: 650 FIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFT 709

Query: 237 KIDLRS 240
            +DL S
Sbjct: 710 TLDLHS 715

[Close]

BLAST of Cmc11g0305431.1 vs. ExPASy Swiss-Prot
Match: P10394 (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 4.4e-15
Identity = 48/145 (33.10%), Postives = 79/145 (54.48%), Query Frame = 0


Query: 115 RDYPDVFPEELPGLPPHREVEFAIELEPGTV--------------PISRAPYRMALAELK 174
           +++P++F  +L  +       FA+E EP TV              P+    YR   ++++
Sbjct: 269 KNFPELFKSQLENICSEYIDIFALESEPITVNNLYKQQLRLKDDEPVYTKNYRSPHSQVE 328

Query: 175 ELKVQLQELLDKGFIRPSVSPWGALVLFVKKKDG------SMRLCIDYRELNKVTVKNRY 234
           E++ Q+Q+L+    + PSVS + + +L V KK          RL IDYR++NK  + +++
Sbjct: 329 EIQAQVQKLIKDKIVEPSVSQYNSPLLLVPKKSSPNSDKKKWRLVIDYRQINKKLLADKF 388

Query: 235 PLPRIEDLFDQLQGATVFSKIDLRS 240
           PLPRI+D+ DQL  A  FS +DL S
Sbjct: 389 PLPRIDDILDQLGRAKYFSCLDLMS 413

[Close]

BLAST of Cmc11g0305431.1 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.3e-14
Identity = 42/117 (35.90%), Postives = 70/117 (59.83%), Query Frame = 0


Query: 123 EELPGLPPHREVEFAIELEPGTVPISRAPYRMALAELKELKVQLQELLDKGFIRPSVSPW 182
           E+LP   P + +EF +EL      +    Y +   +++ +  ++ + L  G IR S +  
Sbjct: 391 EKLP--KPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAIN 450

Query: 183 GALVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIEDLFDQLQGATVFSKIDLRS 240
              V+FV KK+G++R+ +DY+ LNK    N YPLP IE L  ++QG+T+F+K+DL+S
Sbjct: 451 ACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKS 505

[Close]

BLAST of Cmc11g0305431.1 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.3e-14
Identity = 42/117 (35.90%), Postives = 70/117 (59.83%), Query Frame = 0


Query: 123 EELPGLPPHREVEFAIELEPGTVPISRAPYRMALAELKELKVQLQELLDKGFIRPSVSPW 182
           E+LP   P + +EF +EL      +    Y +   +++ +  ++ + L  G IR S +  
Sbjct: 391 EKLP--KPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAIN 450

Query: 183 GALVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIEDLFDQLQGATVFSKIDLRS 240
              V+FV KK+G++R+ +DY+ LNK    N YPLP IE L  ++QG+T+F+K+DL+S
Sbjct: 451 ACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKS 505

[Close]

BLAST of Cmc11g0305431.1 vs. ExPASy TrEMBL
Match: A0A5A7TV57 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00240 PE=4 SV=1)

HSP 1 Score: 463.0 bits (1190), Expect = 7.6e-127
Identity = 235/239 (98.33%), Postives = 236/239 (98.74%), Query Frame = 0


Query: 1    MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPSS 60
            MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNP S
Sbjct: 910  MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPS 969

Query: 61   MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV 120
            MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV
Sbjct: 970  MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV 1029

Query: 121  FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMALAELKELKVQLQELLDKGFIRPSVS 180
            FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMA AELKELKVQLQELLDKGFIRPSVS
Sbjct: 1030 FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS 1089

Query: 181  PWGALVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIEDLFDQLQGATVFSKIDLRS 240
            PWGA VLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRI+DLFDQLQGATVFSKIDLRS
Sbjct: 1090 PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRS 1148

[Close]

BLAST of Cmc11g0305431.1 vs. ExPASy TrEMBL
Match: A0A5A7SQU8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G00040 PE=4 SV=1)

HSP 1 Score: 461.8 bits (1187), Expect = 1.7e-126
Identity = 234/239 (97.91%), Postives = 236/239 (98.74%), Query Frame = 0


Query: 1    MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPSS 60
            MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNP S
Sbjct: 799  MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPS 858

Query: 61   MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV 120
            MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV
Sbjct: 859  MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV 918

Query: 121  FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMALAELKELKVQLQELLDKGFIRPSVS 180
            FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMA AELKELKVQLQELLDKGFIRPS+S
Sbjct: 919  FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSMS 978

Query: 181  PWGALVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIEDLFDQLQGATVFSKIDLRS 240
            PWGA VLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRI+DLFDQLQGATVFSKIDLRS
Sbjct: 979  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRS 1037

[Close]

BLAST of Cmc11g0305431.1 vs. ExPASy TrEMBL
Match: A0A5A7SQP5 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002220 PE=4 SV=1)

HSP 1 Score: 461.1 bits (1185), Expect = 2.9e-126
Identity = 233/239 (97.49%), Postives = 235/239 (98.33%), Query Frame = 0


Query: 1   MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPSS 60
           MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWL ANHASIDCSRKEVTFNP S
Sbjct: 409 MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLVANHASIDCSRKEVTFNPPS 468

Query: 61  MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV 120
           MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV
Sbjct: 469 MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV 528

Query: 121 FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMALAELKELKVQLQELLDKGFIRPSVS 180
           FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMA AELKELKVQLQELLDKGFIRPSVS
Sbjct: 529 FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS 588

Query: 181 PWGALVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIEDLFDQLQGATVFSKIDLRS 240
           PWGA +LFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRI+DLFDQLQGATVFSKIDLRS
Sbjct: 589 PWGAPILFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRS 647

[Close]

BLAST of Cmc11g0305431.1 vs. ExPASy TrEMBL
Match: A0A5A7V4L7 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold381G00850 PE=4 SV=1)

HSP 1 Score: 460.7 bits (1184), Expect = 3.8e-126
Identity = 233/239 (97.49%), Postives = 235/239 (98.33%), Query Frame = 0


Query: 1   MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPSS 60
           MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNP S
Sbjct: 300 MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPS 359

Query: 61  MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV 120
           MASFKFKGGGSRSLPQVIS IRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV
Sbjct: 360 MASFKFKGGGSRSLPQVISTIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV 419

Query: 121 FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMALAELKELKVQLQELLDKGFIRPSVS 180
           FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMA AE+KELKVQLQELLDKGFIRPSVS
Sbjct: 420 FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAEMKELKVQLQELLDKGFIRPSVS 479

Query: 181 PWGALVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIEDLFDQLQGATVFSKIDLRS 240
           PWGA VLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRI+DLFDQLQGATVFSKIDLRS
Sbjct: 480 PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRS 538

[Close]

BLAST of Cmc11g0305431.1 vs. ExPASy TrEMBL
Match: A0A5A7TB42 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold118G00260 PE=4 SV=1)

HSP 1 Score: 460.3 bits (1183), Expect = 4.9e-126
Identity = 234/239 (97.91%), Postives = 235/239 (98.33%), Query Frame = 0


Query: 1   MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPSS 60
           MLSKEKVKACQIEIA HVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNP S
Sbjct: 552 MLSKEKVKACQIEIADHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPS 611

Query: 61  MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV 120
           MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV
Sbjct: 612 MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV 671

Query: 121 FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMALAELKELKVQLQELLDKGFIRPSVS 180
           FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMA AELKELKVQLQELLDKGFIRPSVS
Sbjct: 672 FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS 731

Query: 181 PWGALVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIEDLFDQLQGATVFSKIDLRS 240
           PWGA VLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRI+DLFDQLQGATVFSKIDLRS
Sbjct: 732 PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRS 790

The following BLAST results are available for this feature:

BLAST of Cmc11g0305431.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047433.1	1.6e-126	98.33	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0031931.1	3.5e-126	97.91	pol protein [Cucumis melo var. makuwa]	[more]
KAA0032356.1	5.9e-126	97.49	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0063192.1	7.8e-126	97.49	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0040188.1	1.0e-125	97.91	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc11g0305431.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	1.1e-18	38.89	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	1.1e-18	38.89	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P10394	4.4e-15	33.10	Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaste...	[more]
Q9UR07	1.3e-14	35.90	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	1.3e-14	35.90	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of Cmc11g0305431.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TV57	7.6e-127	98.33	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7SQU8	1.7e-126	97.91	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13...	[more]
A0A5A7SQP5	2.9e-126	97.49	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7V4L7	3.8e-126	97.49	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7TB42	4.9e-126	97.91	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold11...	[more]

BLAST of Cmc11g0305431.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 152..172
None	No IPR available	PFAM	PF08284	RVP_2	coord: 4..59 e-value: 2.0E-16 score: 60.0
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 135..213 e-value: 1.4E-41 score: 144.1
None	No IPR available	PANTHER	PTHR24559:SF330	RNA-DIRECTED DNA POLYMERASE HOMOLOG	coord: 18..211
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 18..211
None	No IPR available	CDD	cd00303	retropepsin_like	coord: 1..41 e-value: 6.53472E-9 score: 50.0276
None	No IPR available	CDD	cd01647	RT_LTR	coord: 173..239 e-value: 1.26729E-33 score: 117.696
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 214..239 e-value: 1.4E-41 score: 144.1
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 2..66 e-value: 2.8E-14 score: 55.0
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 113..239

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc11g0305431	Cmc11g0305431	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0305431.1-exon	Cmc11g0305431.1-exon-CMiso1.1chr11:26741840..26742559	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0305431.1-cds	Cmc11g0305431.1-cds-CMiso1.1chr11:26741840..26742559	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc11g0305431.1	Cmc11g0305431.1-protein	polypeptide