Cmc11g0304181.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc11g0304181.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr11: 25730587 .. 25731414 (+)
Sequence length	828
RNA-Seq Expression	Cmc11g0304181.1
Synteny	Cmc11g0304181.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACAAAACTTTAAAGAAGGCTTATTGGTGGCCTGGAATGAAGCAAGAGATAACTGAATATGTTGATAGATGTTTGATTTTTCAACAGGTTAAACCAGTAAGACAGAGGCTAGGAGGATTTCTTAATCCTTTGCCAGTGCCAGAGTGGAAATGGGAGCATATTACTATGGATTTTCTGTTTGAATTACCTCGTACATCCAGTGGACATGATGGTATATGGGTAATAATAGACAGACTCACCAAGACGGCACGATTTATACCTGTTAAAGTGAAATCTACGTTAGACCAGCTAGCTAGATTATATGTCAATAAGATTGTGAGTCAGTATGGAGTACCAGTGTCCATAGTTTCAGATAGGGATCCGAGGTTTACTTCTAAATTTTGGCCTAGTTTACAGAAAGCAATGGGAACAGGGCCAAAGTTTAGTACATCATTTCATCCCCAAACAGATGGTCAGTCCGAGAGGACCATCCAAACTTTAGAGGACATGTTGAGAGCATGTGTCCTTCAACTTAAAGGAAGTTGGGATACCCACTTGCCACTTATGGAGTTTGCTTATAATAATAACTATCAGTCTAGTATCGGTATGGCACCATATGAGGCCTTATACAGAAGACCATGCAGAACTCTTGTGTGCTGGAATGAAGTGGGAGAGCGGAAGTTAGTAGGTCCTGAGTTGATTCAGACTAGGAGAAACAATATTAAGTTAATAAGAGAAAACCTGAAGATAGCCCAAGATCGGCAGAAAAGTTATGTGGATAAGCGACAAAGAAACTTAGAATTCCAAGTTGGAGATCAAGTTTTCTTGAAATTATCTCCATGGTGA

mRNA sequence

ATGTACAAAACTTTAAAGAAGGCTTATTGGTGGCCTGGAATGAAGCAAGAGATAACTGAATATGTTGATAGATGTTTGATTTTTCAACAGGTTAAACCAGTAAGACAGAGGCTAGGAGGATTTCTTAATCCTTTGCCAGTGCCAGAGTGGAAATGGGAGCATATTACTATGGATTTTCTGTTTGAATTACCTCGTACATCCAGTGGACATGATGGTATATGGGTAATAATAGACAGACTCACCAAGACGGCACGATTTATACCTGTTAAAGTGAAATCTACGTTAGACCAGCTAGCTAGATTATATGTCAATAAGATTGTGAGTCAGTATGGAGTACCAGTGTCCATAGTTTCAGATAGGGATCCGAGGTTTACTTCTAAATTTTGGCCTAGTTTACAGAAAGCAATGGGAACAGGGCCAAAGTTTAGTACATCATTTCATCCCCAAACAGATGGTCAGTCCGAGAGGACCATCCAAACTTTAGAGGACATGTTGAGAGCATGTGTCCTTCAACTTAAAGGAAGTTGGGATACCCACTTGCCACTTATGGAGTTTGCTTATAATAATAACTATCAGTCTAGTATCGGTATGGCACCATATGAGGCCTTATACAGAAGACCATGCAGAACTCTTGTGTGCTGGAATGAAGTGGGAGAGCGGAAGTTAGTAGGTCCTGAGTTGATTCAGACTAGGAGAAACAATATTAAGTTAATAAGAGAAAACCTGAAGATAGCCCAAGATCGGCAGAAAAGTTATGTGGATAAGCGACAAAGAAACTTAGAATTCCAAGTTGGAGATCAAGTTTTCTTGAAATTATCTCCATGGTGA

Coding sequence (CDS)

ATGTACAAAACTTTAAAGAAGGCTTATTGGTGGCCTGGAATGAAGCAAGAGATAACTGAATATGTTGATAGATGTTTGATTTTTCAACAGGTTAAACCAGTAAGACAGAGGCTAGGAGGATTTCTTAATCCTTTGCCAGTGCCAGAGTGGAAATGGGAGCATATTACTATGGATTTTCTGTTTGAATTACCTCGTACATCCAGTGGACATGATGGTATATGGGTAATAATAGACAGACTCACCAAGACGGCACGATTTATACCTGTTAAAGTGAAATCTACGTTAGACCAGCTAGCTAGATTATATGTCAATAAGATTGTGAGTCAGTATGGAGTACCAGTGTCCATAGTTTCAGATAGGGATCCGAGGTTTACTTCTAAATTTTGGCCTAGTTTACAGAAAGCAATGGGAACAGGGCCAAAGTTTAGTACATCATTTCATCCCCAAACAGATGGTCAGTCCGAGAGGACCATCCAAACTTTAGAGGACATGTTGAGAGCATGTGTCCTTCAACTTAAAGGAAGTTGGGATACCCACTTGCCACTTATGGAGTTTGCTTATAATAATAACTATCAGTCTAGTATCGGTATGGCACCATATGAGGCCTTATACAGAAGACCATGCAGAACTCTTGTGTGCTGGAATGAAGTGGGAGAGCGGAAGTTAGTAGGTCCTGAGTTGATTCAGACTAGGAGAAACAATATTAAGTTAATAAGAGAAAACCTGAAGATAGCCCAAGATCGGCAGAAAAGTTATGTGGATAAGCGACAAAGAAACTTAGAATTCCAAGTTGGAGATCAAGTTTTCTTGAAATTATCTCCATGGTGA

Protein sequence

MYKTLKKAYWWPGMKQEITEYVDRCLIFQQVKPVRQRLGGFLNPLPVPEWKWEHITMDFLFELPRTSSGHDGIWVIIDRLTKTARFIPVKVKSTLDQLARLYVNKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGPKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYRRPCRTLVCWNEVGERKLVGPELIQTRRNNIKLIRENLKIAQDRQKSYVDKRQRNLEFQVGDQVFLKLSPW

Homology

[Close]

BLAST of Cmc11g0304181.1 vs. NCBI nr
Match: KAA0053322.1 (retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa])

HSP 1 Score: 530.4 bits (1365), Expect = 9.2e-147
Identity = 251/275 (91.27%), Postives = 260/275 (94.55%), Query Frame = 0


Query: 1    MYKTLKKAYWWPGMKQEITEYVDRCLIFQQVKPVRQRLGGFLNPLPVPEWKWEHITMDFL 60
            MY+TLKK YWW GMKQEI EYVDRCLI QQVKPVRQR GGFLNPLPVPEWKWEHITMDFL
Sbjct: 1083 MYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFL 1142

Query: 61   FELPRTSSGHDGIWVIIDRLTKTARFIPVKVKSTLDQLARLYVNKIVSQYGVPVSIVSDR 120
            F LPRTSSGHDGIWVI+DRLTKT RFIP+K+ STLDQLARLYV+KIVSQYGVPVSIVSDR
Sbjct: 1143 FGLPRTSSGHDGIWVIVDRLTKTKRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDR 1202

Query: 121  DPRFTSKFWPSLQKAMGTGPKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDTHL 180
            DPRFTSKFWPSLQKAMGTG KFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDTHL
Sbjct: 1203 DPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDTHL 1262

Query: 181  PLMEFAYNNNYQSSIGMAPYEALYRRPCRTLVCWNEVGERKLVGPELIQTRRNNIKLIRE 240
            PLMEFAYNNNYQSSIGMAPYEALY RPCRT VCWNEVGERKLVGPEL+Q R NNIKLIRE
Sbjct: 1263 PLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQIRTNNIKLIRE 1322

Query: 241  NLKIAQDRQKSYVDKRQRNLEFQVGDQVFLKLSPW 276
            N++ AQDRQKSY DKR+RNLEFQVGDQVFLKLSPW
Sbjct: 1323 NMRKAQDRQKSYADKRRRNLEFQVGDQVFLKLSPW 1357

[Close]

BLAST of Cmc11g0304181.1 vs. NCBI nr
Match: KAA0035809.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 529.3 bits (1362), Expect = 2.0e-146
Identity = 250/275 (90.91%), Postives = 260/275 (94.55%), Query Frame = 0


Query: 1   MYKTLKKAYWWPGMKQEITEYVDRCLIFQQVKPVRQRLGGFLNPLPVPEWKWEHITMDFL 60
           MY+TLKK YWW GMKQEI EYVDRCLI QQVKPVRQR GGFLNPLPVPEWKWEHITMDFL
Sbjct: 8   MYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFL 67

Query: 61  FELPRTSSGHDGIWVIIDRLTKTARFIPVKVKSTLDQLARLYVNKIVSQYGVPVSIVSDR 120
           F LPRTSSGHDGIWVI+DRLTKT RFIP+K+ STLDQLARLYV+KIVSQYGVPVSIVSDR
Sbjct: 68  FGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDR 127

Query: 121 DPRFTSKFWPSLQKAMGTGPKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDTHL 180
           DPRFTSKFWPSLQKAMGTG KFSTSFHPQTDGQS+RTIQTLEDMLRACV+QLKGSWDTHL
Sbjct: 128 DPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSKRTIQTLEDMLRACVVQLKGSWDTHL 187

Query: 181 PLMEFAYNNNYQSSIGMAPYEALYRRPCRTLVCWNEVGERKLVGPELIQTRRNNIKLIRE 240
           PLMEFAYNNNYQSSIGMAPYEALY RPCRTLVCWNEVGERKLVGPEL+Q   NNIKLIRE
Sbjct: 188 PLMEFAYNNNYQSSIGMAPYEALYGRPCRTLVCWNEVGERKLVGPELVQITTNNIKLIRE 247

Query: 241 NLKIAQDRQKSYVDKRQRNLEFQVGDQVFLKLSPW 276
           NL+ AQDRQKSY DKR+RNLEFQVGDQVFLKLSPW
Sbjct: 248 NLRKAQDRQKSYADKRRRNLEFQVGDQVFLKLSPW 282

[Close]

BLAST of Cmc11g0304181.1 vs. NCBI nr
Match: KAA0053246.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 529.3 bits (1362), Expect = 2.0e-146
Identity = 251/275 (91.27%), Postives = 259/275 (94.18%), Query Frame = 0


Query: 1   MYKTLKKAYWWPGMKQEITEYVDRCLIFQQVKPVRQRLGGFLNPLPVPEWKWEHITMDFL 60
           MY+TLKK YWW GMKQEI EYVDRCLI QQVKPVRQR GGFLNPLPVPEWKWEHITMDFL
Sbjct: 217 MYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFL 276

Query: 61  FELPRTSSGHDGIWVIIDRLTKTARFIPVKVKSTLDQLARLYVNKIVSQYGVPVSIVSDR 120
           F LPRTSSGHDGIWVI+DRLTKT RFIP+K+ STLDQLARLYV+KIVSQYGVPVSIVSDR
Sbjct: 277 FGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDR 336

Query: 121 DPRFTSKFWPSLQKAMGTGPKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDTHL 180
           DPRFTSKFWPSLQKAMGTG KFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDTHL
Sbjct: 337 DPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDTHL 396

Query: 181 PLMEFAYNNNYQSSIGMAPYEALYRRPCRTLVCWNEVGERKLVGPELIQTRRNNIKLIRE 240
           PLMEFAYNNNYQSSIGMAPYEALY RPCRT VCWNEVGERKLVGPEL+Q   NNIKLIRE
Sbjct: 397 PLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRE 456

Query: 241 NLKIAQDRQKSYVDKRQRNLEFQVGDQVFLKLSPW 276
           NL+ AQDRQKSY DKR+RNLEFQVGDQVFLKLSPW
Sbjct: 457 NLRKAQDRQKSYADKRRRNLEFQVGDQVFLKLSPW 491

[Close]

BLAST of Cmc11g0304181.1 vs. NCBI nr
Match: KAA0050493.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 529.3 bits (1362), Expect = 2.0e-146
Identity = 251/275 (91.27%), Postives = 259/275 (94.18%), Query Frame = 0


Query: 1    MYKTLKKAYWWPGMKQEITEYVDRCLIFQQVKPVRQRLGGFLNPLPVPEWKWEHITMDFL 60
            MY+TLKK YWW GMKQEI EYVDRCLI QQVKPVRQR GGFLNPLPVPEWKWEHITMDFL
Sbjct: 739  MYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFL 798

Query: 61   FELPRTSSGHDGIWVIIDRLTKTARFIPVKVKSTLDQLARLYVNKIVSQYGVPVSIVSDR 120
            F LPRTSSGHDGIWVI+DRLTKT RFIP+K+ STLDQLARLYV+KIVSQYGVPVSIVSDR
Sbjct: 799  FGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDR 858

Query: 121  DPRFTSKFWPSLQKAMGTGPKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDTHL 180
            DPRFTSKFWPSLQKAMGTG KFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDTHL
Sbjct: 859  DPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDTHL 918

Query: 181  PLMEFAYNNNYQSSIGMAPYEALYRRPCRTLVCWNEVGERKLVGPELIQTRRNNIKLIRE 240
            PLMEFAYNNNYQSSIGMAPYEALY RPCRT VCWNEVGERKLVGPEL+Q   NNIKLIRE
Sbjct: 919  PLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRE 978

Query: 241  NLKIAQDRQKSYVDKRQRNLEFQVGDQVFLKLSPW 276
            NL+ AQDRQKSY DKR+RNLEFQVGDQVFLKLSPW
Sbjct: 979  NLRKAQDRQKSYADKRRRNLEFQVGDQVFLKLSPW 1013

[Close]

BLAST of Cmc11g0304181.1 vs. NCBI nr
Match: KAA0059912.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 529.3 bits (1362), Expect = 2.0e-146
Identity = 251/275 (91.27%), Postives = 259/275 (94.18%), Query Frame = 0


Query: 1   MYKTLKKAYWWPGMKQEITEYVDRCLIFQQVKPVRQRLGGFLNPLPVPEWKWEHITMDFL 60
           MY+TLKK YWW GMKQEI EYVDRCLI QQVKPVRQR GGFLNPLPVPEWKWEHITMDFL
Sbjct: 407 MYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFL 466

Query: 61  FELPRTSSGHDGIWVIIDRLTKTARFIPVKVKSTLDQLARLYVNKIVSQYGVPVSIVSDR 120
           F LPRTSSGHDGIWVI+DRLTKT RFIP+K+ STLDQLARLYV+KIVSQYGVPVSIVSDR
Sbjct: 467 FGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDR 526

Query: 121 DPRFTSKFWPSLQKAMGTGPKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDTHL 180
           DPRFTSKFWPSLQKAMGTG KFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDTHL
Sbjct: 527 DPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDTHL 586

Query: 181 PLMEFAYNNNYQSSIGMAPYEALYRRPCRTLVCWNEVGERKLVGPELIQTRRNNIKLIRE 240
           PLMEFAYNNNYQSSIGMAPYEALY RPCRT VCWNEVGERKLVGPEL+Q   NNIKLIRE
Sbjct: 587 PLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRE 646

Query: 241 NLKIAQDRQKSYVDKRQRNLEFQVGDQVFLKLSPW 276
           NL+ AQDRQKSY DKR+RNLEFQVGDQVFLKLSPW
Sbjct: 647 NLRKAQDRQKSYADKRRRNLEFQVGDQVFLKLSPW 681

[Close]

BLAST of Cmc11g0304181.1 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 167.5 bits (423), Expect = 2.1e-40
Identity = 96/264 (36.36%), Postives = 143/264 (54.17%), Query Frame = 0


Query: 9    YWWPGMKQEITEYVDRCLIFQQVKPVRQRLGGFLNPLPVPEWKWEHITMDFLFELPRTSS 68
            Y+WP ++  I +Y+  C+  Q +K  R RL G L PLP+ E +W  I+MDF+  LP TS+
Sbjct: 1152 YYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTSN 1211

Query: 69   GHDGIWVIIDRLTKTARFIPVKVKSTLDQLARLYVNKIVSQYGVPVSIVSDRDPRFTSKF 128
              + I V++DR +K A FI  +      QL  L    I S +G P +I SDRD R T+  
Sbjct: 1212 NLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTADK 1271

Query: 129  WPSLQKAMGTGPKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYN 188
            +  L K +G     S++ HPQTDGQSERTIQTL  +LRA V     +W  +LP +EF YN
Sbjct: 1272 YQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYVSTNIQNWHVYLPQIEFVYN 1331

Query: 189  NNYQSSIGMAPYE--ALYRRPCRTLVCWNEVGERKLVGPELIQTRRNNIKLIRENLKIAQ 248
            +    ++G +P+E    Y      +   +EV  R     EL +  +      +E L+ AQ
Sbjct: 1332 STPTRTLGKSPFEIDLGYLPNTPAIKSDDEVNARSFTAVELAKHLKALTIQTKEQLEHAQ 1391

Query: 249  DRQKSYVDKRQRNLEFQVGDQVFL 271
               ++  ++R++ L   +GD V +
Sbjct: 1392 IEMETNNNQRRKPLLLNIGDHVLV 1415

[Close]

BLAST of Cmc11g0304181.1 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 166.0 bits (419), Expect = 6.0e-40
Identity = 95/264 (35.98%), Postives = 142/264 (53.79%), Query Frame = 0


Query: 9    YWWPGMKQEITEYVDRCLIFQQVKPVRQRLGGFLNPLPVPEWKWEHITMDFLFELPRTSS 68
            Y+WP ++  I +Y+  C+  Q +K  R RL G L PLP+ E +W  I+MDF+  LP TS+
Sbjct: 1126 YYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTSN 1185

Query: 69   GHDGIWVIIDRLTKTARFIPVKVKSTLDQLARLYVNKIVSQYGVPVSIVSDRDPRFTSKF 128
              + I V++DR +K A FI  +      QL  L    I S +G P +I SDRD R T+  
Sbjct: 1186 NLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTADK 1245

Query: 129  WPSLQKAMGTGPKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYN 188
            +  L K +G     S++ HPQTDGQSERTIQTL  +LRA       +W  +LP +EF YN
Sbjct: 1246 YQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYASTNIQNWHVYLPQIEFVYN 1305

Query: 189  NNYQSSIGMAPYE--ALYRRPCRTLVCWNEVGERKLVGPELIQTRRNNIKLIRENLKIAQ 248
            +    ++G +P+E    Y      +   +EV  R     EL +  +      +E L+ AQ
Sbjct: 1306 STPTRTLGKSPFEIDLGYLPNTPAIKSDDEVNARSFTAVELAKHLKALTIQTKEQLEHAQ 1365

Query: 249  DRQKSYVDKRQRNLEFQVGDQVFL 271
               ++  ++R++ L   +GD V +
Sbjct: 1366 IEMETNNNQRRKPLLLNIGDHVLV 1389

[Close]

BLAST of Cmc11g0304181.1 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 6.2e-37
Identity = 89/271 (32.84%), Postives = 141/271 (52.03%), Query Frame = 0


Query: 7    KAYWWPGMKQEITEYVDRCLIFQQVKPVRQRLGGFLNPLPVPEWKWEHITMDFLFELPRT 66
            + + W G++++I EYV  C   Q  K    +  G L P+P  E  WE ++MDF+  LP  
Sbjct: 939  RRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPE- 998

Query: 67   SSGHDGIWVIIDRLTKTARFIPVKVKSTLDQLARLYVNKIVSQYGVPVSIVSDRDPRFTS 126
            SSG++ ++V++DR +K A  +P     T +Q AR++  ++++ +G P  I++D D  FTS
Sbjct: 999  SSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTS 1058

Query: 127  KFWPSLQKAMGTGPKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFA 186
            + W           KFS  + PQTDGQ+ERT QT+E +LR        +W  H+ L++ +
Sbjct: 1059 QTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQS 1118

Query: 187  YNNNYQSSIGMAPYEALYR-----RPCRTLVCWNEVGERKLVGPELIQTRRNNIKLIREN 246
            YNN   S+  M P+E ++R      P       ++  E      ++ QT       ++E+
Sbjct: 1119 YNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDENSQETIQVFQT-------VKEH 1178

Query: 247  LKIAQDRQKSYVD-KRQRNLEFQVGDQVFLK 272
            L     + K Y D K Q   EFQ GD V +K
Sbjct: 1179 LNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK 1201

[Close]

BLAST of Cmc11g0304181.1 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 6.2e-37
Identity = 89/271 (32.84%), Postives = 141/271 (52.03%), Query Frame = 0


Query: 7    KAYWWPGMKQEITEYVDRCLIFQQVKPVRQRLGGFLNPLPVPEWKWEHITMDFLFELPRT 66
            + + W G++++I EYV  C   Q  K    +  G L P+P  E  WE ++MDF+  LP  
Sbjct: 939  RRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPE- 998

Query: 67   SSGHDGIWVIIDRLTKTARFIPVKVKSTLDQLARLYVNKIVSQYGVPVSIVSDRDPRFTS 126
            SSG++ ++V++DR +K A  +P     T +Q AR++  ++++ +G P  I++D D  FTS
Sbjct: 999  SSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTS 1058

Query: 127  KFWPSLQKAMGTGPKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFA 186
            + W           KFS  + PQTDGQ+ERT QT+E +LR        +W  H+ L++ +
Sbjct: 1059 QTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQS 1118

Query: 187  YNNNYQSSIGMAPYEALYR-----RPCRTLVCWNEVGERKLVGPELIQTRRNNIKLIREN 246
            YNN   S+  M P+E ++R      P       ++  E      ++ QT       ++E+
Sbjct: 1119 YNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDENSQETIQVFQT-------VKEH 1178

Query: 247  LKIAQDRQKSYVD-KRQRNLEFQVGDQVFLK 272
            L     + K Y D K Q   EFQ GD V +K
Sbjct: 1179 LNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK 1201

[Close]

BLAST of Cmc11g0304181.1 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 6.2e-37
Identity = 89/271 (32.84%), Postives = 141/271 (52.03%), Query Frame = 0


Query: 7    KAYWWPGMKQEITEYVDRCLIFQQVKPVRQRLGGFLNPLPVPEWKWEHITMDFLFELPRT 66
            + + W G++++I EYV  C   Q  K    +  G L P+P  E  WE ++MDF+  LP  
Sbjct: 939  RRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPE- 998

Query: 67   SSGHDGIWVIIDRLTKTARFIPVKVKSTLDQLARLYVNKIVSQYGVPVSIVSDRDPRFTS 126
            SSG++ ++V++DR +K A  +P     T +Q AR++  ++++ +G P  I++D D  FTS
Sbjct: 999  SSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTS 1058

Query: 127  KFWPSLQKAMGTGPKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFA 186
            + W           KFS  + PQTDGQ+ERT QT+E +LR        +W  H+ L++ +
Sbjct: 1059 QTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQS 1118

Query: 187  YNNNYQSSIGMAPYEALYR-----RPCRTLVCWNEVGERKLVGPELIQTRRNNIKLIREN 246
            YNN   S+  M P+E ++R      P       ++  E      ++ QT       ++E+
Sbjct: 1119 YNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDENSQETIQVFQT-------VKEH 1178

Query: 247  LKIAQDRQKSYVD-KRQRNLEFQVGDQVFLK 272
            L     + K Y D K Q   EFQ GD V +K
Sbjct: 1179 LNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK 1201

[Close]

BLAST of Cmc11g0304181.1 vs. ExPASy TrEMBL
Match: A0A5A7UC49 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G001470 PE=4 SV=1)

HSP 1 Score: 530.4 bits (1365), Expect = 4.4e-147
Identity = 251/275 (91.27%), Postives = 260/275 (94.55%), Query Frame = 0


Query: 1    MYKTLKKAYWWPGMKQEITEYVDRCLIFQQVKPVRQRLGGFLNPLPVPEWKWEHITMDFL 60
            MY+TLKK YWW GMKQEI EYVDRCLI QQVKPVRQR GGFLNPLPVPEWKWEHITMDFL
Sbjct: 1083 MYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFL 1142

Query: 61   FELPRTSSGHDGIWVIIDRLTKTARFIPVKVKSTLDQLARLYVNKIVSQYGVPVSIVSDR 120
            F LPRTSSGHDGIWVI+DRLTKT RFIP+K+ STLDQLARLYV+KIVSQYGVPVSIVSDR
Sbjct: 1143 FGLPRTSSGHDGIWVIVDRLTKTKRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDR 1202

Query: 121  DPRFTSKFWPSLQKAMGTGPKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDTHL 180
            DPRFTSKFWPSLQKAMGTG KFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDTHL
Sbjct: 1203 DPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDTHL 1262

Query: 181  PLMEFAYNNNYQSSIGMAPYEALYRRPCRTLVCWNEVGERKLVGPELIQTRRNNIKLIRE 240
            PLMEFAYNNNYQSSIGMAPYEALY RPCRT VCWNEVGERKLVGPEL+Q R NNIKLIRE
Sbjct: 1263 PLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQIRTNNIKLIRE 1322

Query: 241  NLKIAQDRQKSYVDKRQRNLEFQVGDQVFLKLSPW 276
            N++ AQDRQKSY DKR+RNLEFQVGDQVFLKLSPW
Sbjct: 1323 NMRKAQDRQKSYADKRRRNLEFQVGDQVFLKLSPW 1357

[Close]

BLAST of Cmc11g0304181.1 vs. ExPASy TrEMBL
Match: A0A5A7U2V7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00630 PE=4 SV=1)

HSP 1 Score: 529.3 bits (1362), Expect = 9.9e-147
Identity = 251/275 (91.27%), Postives = 259/275 (94.18%), Query Frame = 0


Query: 1    MYKTLKKAYWWPGMKQEITEYVDRCLIFQQVKPVRQRLGGFLNPLPVPEWKWEHITMDFL 60
            MY+TLKK YWW GMKQEI EYVDRCLI QQVKPVRQR GGFLNPLPVPEWKWEHITMDFL
Sbjct: 1147 MYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFL 1206

Query: 61   FELPRTSSGHDGIWVIIDRLTKTARFIPVKVKSTLDQLARLYVNKIVSQYGVPVSIVSDR 120
            F LPRTSSGHDGIWVI+DRLTKT RFIP+K+ STLDQLARLYV+KIVSQYGVPVSIVSDR
Sbjct: 1207 FGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDR 1266

Query: 121  DPRFTSKFWPSLQKAMGTGPKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDTHL 180
            DPRFTSKFWPSLQKAMGTG KFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDTHL
Sbjct: 1267 DPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDTHL 1326

Query: 181  PLMEFAYNNNYQSSIGMAPYEALYRRPCRTLVCWNEVGERKLVGPELIQTRRNNIKLIRE 240
            PLMEFAYNNNYQSSIGMAPYEALY RPCRT VCWNEVGERKLVGPEL+Q   NNIKLIRE
Sbjct: 1327 PLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRE 1386

Query: 241  NLKIAQDRQKSYVDKRQRNLEFQVGDQVFLKLSPW 276
            NL+ AQDRQKSY DKR+RNLEFQVGDQVFLKLSPW
Sbjct: 1387 NLRKAQDRQKSYADKRRRNLEFQVGDQVFLKLSPW 1421

[Close]

BLAST of Cmc11g0304181.1 vs. ExPASy TrEMBL
Match: A0A5D3BS67 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold509G00050 PE=4 SV=1)

HSP 1 Score: 529.3 bits (1362), Expect = 9.9e-147
Identity = 251/275 (91.27%), Postives = 259/275 (94.18%), Query Frame = 0


Query: 1    MYKTLKKAYWWPGMKQEITEYVDRCLIFQQVKPVRQRLGGFLNPLPVPEWKWEHITMDFL 60
            MY+TLKK YWW GMKQEI EYVDRCLI QQVKPVRQR GGFLNPLPVPEWKWEHITMDFL
Sbjct: 1185 MYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFL 1244

Query: 61   FELPRTSSGHDGIWVIIDRLTKTARFIPVKVKSTLDQLARLYVNKIVSQYGVPVSIVSDR 120
            F LPRTSSGHDGIWVI+DRLTKT RFIP+K+ STLDQLARLYV+KIVSQYGVPVSIVSDR
Sbjct: 1245 FGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDR 1304

Query: 121  DPRFTSKFWPSLQKAMGTGPKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDTHL 180
            DPRFTSKFWPSLQKAMGTG KFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDTHL
Sbjct: 1305 DPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDTHL 1364

Query: 181  PLMEFAYNNNYQSSIGMAPYEALYRRPCRTLVCWNEVGERKLVGPELIQTRRNNIKLIRE 240
            PLMEFAYNNNYQSSIGMAPYEALY RPCRT VCWNEVGERKLVGPEL+Q   NNIKLIRE
Sbjct: 1365 PLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRE 1424

Query: 241  NLKIAQDRQKSYVDKRQRNLEFQVGDQVFLKLSPW 276
            NL+ AQDRQKSY DKR+RNLEFQVGDQVFLKLSPW
Sbjct: 1425 NLRKAQDRQKSYADKRRRNLEFQVGDQVFLKLSPW 1459

[Close]

BLAST of Cmc11g0304181.1 vs. ExPASy TrEMBL
Match: A0A5D3BHI1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold115G00450 PE=4 SV=1)

HSP 1 Score: 529.3 bits (1362), Expect = 9.9e-147
Identity = 251/275 (91.27%), Postives = 259/275 (94.18%), Query Frame = 0


Query: 1    MYKTLKKAYWWPGMKQEITEYVDRCLIFQQVKPVRQRLGGFLNPLPVPEWKWEHITMDFL 60
            MY+TLKK YWW GMKQEI EYVDRCLI QQVKPVRQR GGFLNPLPVPEWKWEHITMDFL
Sbjct: 1185 MYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFL 1244

Query: 61   FELPRTSSGHDGIWVIIDRLTKTARFIPVKVKSTLDQLARLYVNKIVSQYGVPVSIVSDR 120
            F LPRTSSGHDGIWVI+DRLTKT RFIP+K+ STLDQLARLYV+KIVSQYGVPVSIVSDR
Sbjct: 1245 FGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDR 1304

Query: 121  DPRFTSKFWPSLQKAMGTGPKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDTHL 180
            DPRFTSKFWPSLQKAMGTG KFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDTHL
Sbjct: 1305 DPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDTHL 1364

Query: 181  PLMEFAYNNNYQSSIGMAPYEALYRRPCRTLVCWNEVGERKLVGPELIQTRRNNIKLIRE 240
            PLMEFAYNNNYQSSIGMAPYEALY RPCRT VCWNEVGERKLVGPEL+Q   NNIKLIRE
Sbjct: 1365 PLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRE 1424

Query: 241  NLKIAQDRQKSYVDKRQRNLEFQVGDQVFLKLSPW 276
            NL+ AQDRQKSY DKR+RNLEFQVGDQVFLKLSPW
Sbjct: 1425 NLRKAQDRQKSYADKRRRNLEFQVGDQVFLKLSPW 1459

[Close]

BLAST of Cmc11g0304181.1 vs. ExPASy TrEMBL
Match: A0A5A7T1Y5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold436G00980 PE=4 SV=1)

HSP 1 Score: 529.3 bits (1362), Expect = 9.9e-147
Identity = 251/275 (91.27%), Postives = 259/275 (94.18%), Query Frame = 0


Query: 1    MYKTLKKAYWWPGMKQEITEYVDRCLIFQQVKPVRQRLGGFLNPLPVPEWKWEHITMDFL 60
            MY+TLKK YWW GMKQEI EYVDRCLI QQVKPVRQR GGFLNPLPVPEWKWEHITMDFL
Sbjct: 1185 MYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFL 1244

Query: 61   FELPRTSSGHDGIWVIIDRLTKTARFIPVKVKSTLDQLARLYVNKIVSQYGVPVSIVSDR 120
            F LPRTSSGHDGIWVI+DRLTKT RFIP+K+ STLDQLARLYV+KIVSQYGVPVSIVSDR
Sbjct: 1245 FGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDR 1304

Query: 121  DPRFTSKFWPSLQKAMGTGPKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDTHL 180
            DPRFTSKFWPSLQKAMGTG KFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDTHL
Sbjct: 1305 DPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDTHL 1364

Query: 181  PLMEFAYNNNYQSSIGMAPYEALYRRPCRTLVCWNEVGERKLVGPELIQTRRNNIKLIRE 240
            PLMEFAYNNNYQSSIGMAPYEALY RPCRT VCWNEVGERKLVGPEL+Q   NNIKLIRE
Sbjct: 1365 PLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRE 1424

Query: 241  NLKIAQDRQKSYVDKRQRNLEFQVGDQVFLKLSPW 276
            NL+ AQDRQKSY DKR+RNLEFQVGDQVFLKLSPW
Sbjct: 1425 NLRKAQDRQKSYADKRRRNLEFQVGDQVFLKLSPW 1459

The following BLAST results are available for this feature:

BLAST of Cmc11g0304181.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0053322.1	9.2e-147	91.27	retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]	[more]
KAA0035809.1	2.0e-146	90.91	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0053246.1	2.0e-146	91.27	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0050493.1	2.0e-146	91.27	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0059912.1	2.0e-146	91.27	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Cmc11g0304181.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7LHG5	2.1e-40	36.36	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q99315	6.0e-40	35.98	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q9UR07	6.2e-37	32.84	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	6.2e-37	32.84	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	6.2e-37	32.84	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc11g0304181.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UC49	4.4e-147	91.27	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold10...	[more]
A0A5A7U2V7	9.9e-147	91.27	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37...	[more]
A0A5D3BS67	9.9e-147	91.27	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold50...	[more]
A0A5D3BHI1	9.9e-147	91.27	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7T1Y5	9.9e-147	91.27	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold43...	[more]

BLAST of Cmc11g0304181.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 43..249 e-value: 1.7E-45 score: 156.7
IPR041588	Integrase zinc-binding domain	PFAM	PF17921	Integrase_H2C2	coord: 1..33 e-value: 2.9E-9 score: 36.9
None	No IPR available	GENE3D	1.10.340.70		coord: 1..32 e-value: 4.5E-7 score: 32.0
None	No IPR available	PANTHER	PTHR45835	YALI0A06105P	coord: 2..199
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 42..207 score: 19.865744
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 43..204

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc11g0304181	Cmc11g0304181	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0304181.1-exon	Cmc11g0304181.1-exon-CMiso1.1chr11:25730587..25731414	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0304181.1-cds	Cmc11g0304181.1-cds-CMiso1.1chr11:25730587..25731414	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc11g0304181.1	Cmc11g0304181.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding