Cmc11g0303911.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc11g0303911.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty3/gypsy retrotransposon protein
Location	CMiso1.1chr11: 25475978 .. 25476892 (+)
Sequence length	915
RNA-Seq Expression	Cmc11g0303911.1
Synteny	Cmc11g0303911.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTATCCACCTATCATGACTCAGTGGTGGGAGGACACTCGGGATTCTTACGTACGTACAAAAGGTTGGCGAGTGAATTATATTGGACAGGGATGAAGGCGGATGTCAAGAAGCATTGTGAAGAATGTCTGGTTTGTCAGCGAAATAAAACCTTGGCTTTGTCCCCGGCTGGATTATTAACTCCTTTGGAAATTCCGCAGCAAGTGTGGAGTGACATTTCTATGGATTTTATTGATGGCTTGCCAAAGGCGAAGGGGTTTGAAGTAGTGTTTGTAGTAGTGTTTGTAGTAGTTGACCGACTGAGTAAGTACAGTCATTTTATGCCACTTAAACATCCTTATACAGCCAAATCAGTGGCGGATGTGTTCGTTAAAGAGGTAGTTCAACTACATGGATTTCCTTCATCCATTGTCTCGGATAGAGATAAAGTTTTTCTTAGTAATTTTTGGAAGGTAATGTTTCGTTTAGTTGGCACAAAGTTGAATAGGAGTACAGCCTATCATCCGCAATCTGATGGCCAAACGGAGGTAGTTAACAAAGGGCTGGAGACTTATCTTCGTTGTTTCTGTGGTGCGCGCCCGAAGGAGTGGGTATCGTGGCTACCGTGGGCGGAGTATTGGTACAACATCACTTTTAATCGGTCACTAGGCGCTTCGCCTTTCCAGGTGTTGTATGGCAGGAAACCTCCGTCGTTGTTATCATATGGGGATGGTGCCACTACCAATTCTATGTTAGCAGAACAGTTAAGTGCCAGAGACACGGTTTTGGCTGCTCTTCAGGATCAACTGTTGTTAGCACAGCAACAAATGAAGCAATACGCTGACAAGAAGAGAAGGCATGTGGAATATAATGTTGGTGAATGGGTGTTGTTAAAGATTAGACCTTATCGACAGCTTTCGTTACGGAAGAAATGA

mRNA sequence

ATGTTATCCACCTATCATGACTCAGTGGTGGGAGGACACTCGGGATTCTTACGTACGTACAAAAGGTTGGCGAGTGAATTATATTGGACAGGGATGAAGGCGGATGTCAAGAAGCATTGTGAAGAATGTCTGGTTTGTCAGCGAAATAAAACCTTGGCTTTGTCCCCGGCTGGATTATTAACTCCTTTGGAAATTCCGCAGCAAGTGTGGAGTGACATTTCTATGGATTTTATTGATGGCTTGCCAAAGGCGAAGGGGTTTGAAGTAGTGTTTGTAGTAGTGTTTGTAGTAGTTGACCGACTGAGTAAGTACAGTCATTTTATGCCACTTAAACATCCTTATACAGCCAAATCAGTGGCGGATGTGTTCGTTAAAGAGGTAGTTCAACTACATGGATTTCCTTCATCCATTGTCTCGGATAGAGATAAAGTTTTTCTTAGTAATTTTTGGAAGGTAATGTTTCGTTTAGTTGGCACAAAGTTGAATAGGAGTACAGCCTATCATCCGCAATCTGATGGCCAAACGGAGGTAGTTAACAAAGGGCTGGAGACTTATCTTCGTTGTTTCTGTGGTGCGCGCCCGAAGGAGTGGGTATCGTGGCTACCGTGGGCGGAGTATTGGTACAACATCACTTTTAATCGGTCACTAGGCGCTTCGCCTTTCCAGGTGTTGTATGGCAGGAAACCTCCGTCGTTGTTATCATATGGGGATGGTGCCACTACCAATTCTATGTTAGCAGAACAGTTAAGTGCCAGAGACACGGTTTTGGCTGCTCTTCAGGATCAACTGTTGTTAGCACAGCAACAAATGAAGCAATACGCTGACAAGAAGAGAAGGCATGTGGAATATAATGTTGGTGAATGGGTGTTGTTAAAGATTAGACCTTATCGACAGCTTTCGTTACGGAAGAAATGA

Coding sequence (CDS)

ATGTTATCCACCTATCATGACTCAGTGGTGGGAGGACACTCGGGATTCTTACGTACGTACAAAAGGTTGGCGAGTGAATTATATTGGACAGGGATGAAGGCGGATGTCAAGAAGCATTGTGAAGAATGTCTGGTTTGTCAGCGAAATAAAACCTTGGCTTTGTCCCCGGCTGGATTATTAACTCCTTTGGAAATTCCGCAGCAAGTGTGGAGTGACATTTCTATGGATTTTATTGATGGCTTGCCAAAGGCGAAGGGGTTTGAAGTAGTGTTTGTAGTAGTGTTTGTAGTAGTTGACCGACTGAGTAAGTACAGTCATTTTATGCCACTTAAACATCCTTATACAGCCAAATCAGTGGCGGATGTGTTCGTTAAAGAGGTAGTTCAACTACATGGATTTCCTTCATCCATTGTCTCGGATAGAGATAAAGTTTTTCTTAGTAATTTTTGGAAGGTAATGTTTCGTTTAGTTGGCACAAAGTTGAATAGGAGTACAGCCTATCATCCGCAATCTGATGGCCAAACGGAGGTAGTTAACAAAGGGCTGGAGACTTATCTTCGTTGTTTCTGTGGTGCGCGCCCGAAGGAGTGGGTATCGTGGCTACCGTGGGCGGAGTATTGGTACAACATCACTTTTAATCGGTCACTAGGCGCTTCGCCTTTCCAGGTGTTGTATGGCAGGAAACCTCCGTCGTTGTTATCATATGGGGATGGTGCCACTACCAATTCTATGTTAGCAGAACAGTTAAGTGCCAGAGACACGGTTTTGGCTGCTCTTCAGGATCAACTGTTGTTAGCACAGCAACAAATGAAGCAATACGCTGACAAGAAGAGAAGGCATGTGGAATATAATGTTGGTGAATGGGTGTTGTTAAAGATTAGACCTTATCGACAGCTTTCGTTACGGAAGAAATGA

Protein sequence

MLSTYHDSVVGGHSGFLRTYKRLASELYWTGMKADVKKHCEECLVCQRNKTLALSPAGLLTPLEIPQQVWSDISMDFIDGLPKAKGFEVVFVVVFVVVDRLSKYSHFMPLKHPYTAKSVADVFVKEVVQLHGFPSSIVSDRDKVFLSNFWKVMFRLVGTKLNRSTAYHPQSDGQTEVVNKGLETYLRCFCGARPKEWVSWLPWAEYWYNITFNRSLGASPFQVLYGRKPPSLLSYGDGATTNSMLAEQLSARDTVLAALQDQLLLAQQQMKQYADKKRRHVEYNVGEWVLLKIRPYRQLSLRKK

Homology

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BLAST of Cmc11g0303911.1 vs. NCBI nr
Match: TYJ98385.1 (retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa])

HSP 1 Score: 522.7 bits (1345), Expect = 2.1e-144
Identity = 246/288 (85.42%), Postives = 265/288 (92.01%), Query Frame = 0


Query: 1    MLSTYHDSVVGGHSGFLRTYKRLASELYWTGMKADVKKHCEECLVCQRNKTLALSPAGLL 60
            +LSTYHDSVVGGHSGFLRTYKRLASELYW  MK DVKK+CEEC+VCQRNKT+ALSPAGLL
Sbjct: 720  ILSTYHDSVVGGHSGFLRTYKRLASELYWPSMKTDVKKYCEECIVCQRNKTMALSPAGLL 779

Query: 61   TPLEIPQQVWSDISMDFIDGLPKAKGFEVVFVVVFVVVDRLSKYSHFMPLKHPYTAKSVA 120
            TPLE+P QVW+DISMDFID LP+AKGFE    VVFVVVDRLSKY+HF+PLKHPYTAKSVA
Sbjct: 780  TPLEVPLQVWNDISMDFIDALPEAKGFE----VVFVVVDRLSKYNHFIPLKHPYTAKSVA 839

Query: 121  DVFVKEVVQLHGFPSSIVSDRDKVFLSNFWKVMFRLVGTKLNRSTAYHPQSDGQTEVVNK 180
            DVFVKEVV+LHGFP+SIVSDRDK+FLSNFWK MFRL GTKLNRSTAYHPQSDGQTEVVN 
Sbjct: 840  DVFVKEVVRLHGFPASIVSDRDKIFLSNFWKEMFRLAGTKLNRSTAYHPQSDGQTEVVNC 899

Query: 181  GLETYLRCFCGARPKEWVSWLPWAEYWYNITFNRSLGASPFQVLYGRKPPSLLSYGDGAT 240
            GLETYLRCFC  RPKEWVSWL WAEYWYN T+NRSLG SPFQVLYGRKPPSLLSYGDG T
Sbjct: 900  GLETYLRCFCSERPKEWVSWLSWAEYWYNTTYNRSLGTSPFQVLYGRKPPSLLSYGDGTT 959

Query: 241  TNSMLAEQLSARDTVLAALQDQLLLAQQQMKQYADKKRRHVEYNVGEW 289
            TNS L +QL  RDT+LA L++QLLLAQQQMKQYADKKRRHVE+NVG+W
Sbjct: 960  TNSTLVDQLKERDTILATLREQLLLAQQQMKQYADKKRRHVEFNVGDW 1003

[Close]

BLAST of Cmc11g0303911.1 vs. NCBI nr
Match: TYK24006.1 (Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 503.1 bits (1294), Expect = 1.7e-138
Identity = 235/289 (81.31%), Postives = 263/289 (91.00%), Query Frame = 0


Query: 1    MLSTYHDSVVGGHSGFLRTYKRLASELYWTGMKADVKKHCEECLVCQRNKTLALSPAGLL 60
            ML T+HDS+VGGHSGFL+TYKRLASELYW GMK DV+++CEEC+VCQRNKT+ALSPAGLL
Sbjct: 890  MLHTFHDSMVGGHSGFLQTYKRLASELYWPGMKKDVQEYCEECVVCQRNKTVALSPAGLL 949

Query: 61   TPLEIPQQVWSDISMDFIDGLPKAKGFEVVFVVVFVVVDRLSKYSHFMPLKHPYTAKSVA 120
            TPLE PQQVWS ISMDF++GLPKAKGFE    VV VVVDRLSKY+HF+PLKHPYTAK+VA
Sbjct: 950  TPLETPQQVWSYISMDFVEGLPKAKGFE----VVLVVVDRLSKYNHFIPLKHPYTAKTVA 1009

Query: 121  DVFVKEVVQLHGFPSSIVSDRDKVFLSNFWKVMFRLVGTKLNRSTAYHPQSDGQTEVVNK 180
            +VFVKE+V+LHGFPSSIVSDRDK+FLS FWK MFRL GT+LN+STAYHPQSDGQTEVVN+
Sbjct: 1010 EVFVKEIVRLHGFPSSIVSDRDKIFLSTFWKEMFRLAGTRLNKSTAYHPQSDGQTEVVNR 1069

Query: 181  GLETYLRCFCGARPKEWVSWLPWAEYWYNITFNRSLGASPFQVLYGRKPPSLLSYGDGAT 240
            GLE YLRCFC  +PKEWV WLPWAEYWYN T  RSLG SPFQVLYGRKPPSL+SYG GAT
Sbjct: 1070 GLEIYLRCFCNEKPKEWVLWLPWAEYWYNTTSQRSLGVSPFQVLYGRKPPSLISYGVGAT 1129

Query: 241  TNSMLAEQLSARDTVLAALQDQLLLAQQQMKQYADKKRRHVEYNVGEWV 290
            +NS LAEQLS RDTVLAAL+D LLLAQQQMKQYAD KRRH+EY++G+WV
Sbjct: 1130 SNSTLAEQLSERDTVLAALRDHLLLAQQQMKQYADMKRRHIEYDIGDWV 1174

[Close]

BLAST of Cmc11g0303911.1 vs. NCBI nr
Match: KAA0061922.1 (Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 503.1 bits (1294), Expect = 1.7e-138
Identity = 235/289 (81.31%), Postives = 263/289 (91.00%), Query Frame = 0


Query: 1    MLSTYHDSVVGGHSGFLRTYKRLASELYWTGMKADVKKHCEECLVCQRNKTLALSPAGLL 60
            ML T+HDS+VGGHSGFL+TYKRLASELYW GMK DV+++CEEC+VCQRNKT+ALSPAGLL
Sbjct: 890  MLHTFHDSMVGGHSGFLQTYKRLASELYWPGMKKDVQEYCEECVVCQRNKTVALSPAGLL 949

Query: 61   TPLEIPQQVWSDISMDFIDGLPKAKGFEVVFVVVFVVVDRLSKYSHFMPLKHPYTAKSVA 120
            TPLE PQQVWS ISMDF++GLPKAKGFE    VV VVVDRLSKY+HF+PLKHPYTAK+VA
Sbjct: 950  TPLETPQQVWSYISMDFVEGLPKAKGFE----VVLVVVDRLSKYNHFIPLKHPYTAKTVA 1009

Query: 121  DVFVKEVVQLHGFPSSIVSDRDKVFLSNFWKVMFRLVGTKLNRSTAYHPQSDGQTEVVNK 180
            +VFVKE+V+LHGFPSSIVSDRDK+FLS FWK MFRL GT+LN+STAYHPQSDGQTEVVN+
Sbjct: 1010 EVFVKEIVRLHGFPSSIVSDRDKIFLSTFWKEMFRLAGTRLNKSTAYHPQSDGQTEVVNR 1069

Query: 181  GLETYLRCFCGARPKEWVSWLPWAEYWYNITFNRSLGASPFQVLYGRKPPSLLSYGDGAT 240
            GLE YLRCFC  +PKEWV WLPWAEYWYN T  RSLG SPFQVLYGRKPPSL+SYG GAT
Sbjct: 1070 GLEIYLRCFCNEKPKEWVLWLPWAEYWYNTTSQRSLGVSPFQVLYGRKPPSLISYGVGAT 1129

Query: 241  TNSMLAEQLSARDTVLAALQDQLLLAQQQMKQYADKKRRHVEYNVGEWV 290
            +NS LAEQLS RDTVLAAL+D LLLAQQQMKQYAD KRRH+EY++G+WV
Sbjct: 1130 SNSTLAEQLSERDTVLAALRDHLLLAQQQMKQYADMKRRHIEYDIGDWV 1174

[Close]

BLAST of Cmc11g0303911.1 vs. NCBI nr
Match: KAA0032312.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYJ99433.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 490.3 bits (1261), Expect = 1.2e-134
Identity = 235/273 (86.08%), Postives = 250/273 (91.58%), Query Frame = 0


Query: 32  MKADVKKHCEECLVCQRNKTLALSPAGLLTPLEIPQQVWSDISMDFIDGLPKAKGFEVVF 91
           MKADVKKHCEEC+VCQRNKT+ALSPAGLLTPLE+P QVW+DISMDFID LPKAKGFE   
Sbjct: 1   MKADVKKHCEECIVCQRNKTMALSPAGLLTPLEVPLQVWNDISMDFIDALPKAKGFE--- 60

Query: 92  VVVFVVVDRLSKYSHFMPLKHPYTAKSVADVFVKEVVQLHGFPSSIVSDRDKVFLSNFWK 151
            VVFVVVDRLSKY+HF+PLKHPYTAKSVADVFVKEVV+LHGFP+SIVSDRDKVFLSNFWK
Sbjct: 61  -VVFVVVDRLSKYNHFIPLKHPYTAKSVADVFVKEVVRLHGFPASIVSDRDKVFLSNFWK 120

Query: 152 VMFRLVGTKLNRSTAYHPQSDGQTEVVNKGLETYLRCFCGARPKEWVSWLPWAEYWYNIT 211
            MFRL G  LNRSTAYHPQSDGQTEVVN+GLETYL CFC  RPKEWVSWLPW EYWYN T
Sbjct: 121 EMFRLAGKNLNRSTAYHPQSDGQTEVVNRGLETYLCCFCSERPKEWVSWLPWTEYWYNTT 180

Query: 212 FNRSLGASPFQVLYGRKPPSLLSYGDGATTNSMLAEQLSARDTVLAALQDQLLLAQQQMK 271
           FNRSLG SPFQVLYGRKPPSLLSYG+G TTNS LA+QL  R TVLAAL++QLLL  QQMK
Sbjct: 181 FNRSLGTSPFQVLYGRKPPSLLSYGNGTTTNSTLADQLKERGTVLAALREQLLLTHQQMK 240

Query: 272 QYADKKRRHVEYNVGEWVLLKIRPYRQLSLRKK 305
           QYADKKRRHVE+NVG+WVLLKIRPYRQLSLRKK
Sbjct: 241 QYADKKRRHVEFNVGDWVLLKIRPYRQLSLRKK 269

[Close]

BLAST of Cmc11g0303911.1 vs. NCBI nr
Match: KAA0050450.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 489.2 bits (1258), Expect = 2.6e-134
Identity = 232/303 (76.57%), Postives = 262/303 (86.47%), Query Frame = 0


Query: 2   LSTYHDSVVGGHSGFLRTYKRLASELYWTGMKADVKKHCEECLVCQRNKTLALSPAGLLT 61
           L+T+HDSVVGGHSGFLRTY+RL SELYW GMK DVK+HCEECL CQRNKTLALSP GLL 
Sbjct: 587 LNTFHDSVVGGHSGFLRTYRRLTSELYWEGMKFDVKRHCEECLTCQRNKTLALSPVGLLV 646

Query: 62  PLEIPQQVWSDISMDFIDGLPKAKGFEVVFVVVFVVVDRLSKYSHFMPLKHPYTAKSVAD 121
           PLEIPQQVWSDISMDF++GLPKA+GFE    VV VVVDRLSKY HF+PLKHPY AK+VAD
Sbjct: 647 PLEIPQQVWSDISMDFVEGLPKARGFE----VVLVVVDRLSKYGHFLPLKHPYIAKTVAD 706

Query: 122 VFVKEVVQLHGFPSSIVSDRDKVFLSNFWKVMFRLVGTKLNRSTAYHPQSDGQTEVVNKG 181
           +FVKE+V+L GFPSSIV DRDK F+S+FWK MFRL GTKLN+STAYH QSDGQTEVVN+G
Sbjct: 707 LFVKEIVRLPGFPSSIVFDRDKSFISHFWKEMFRLAGTKLNKSTAYHLQSDGQTEVVNRG 766

Query: 182 LETYLRCFCGARPKEWVSWLPWAEYWYNITFNRSLGASPFQVLYGRKPPSLLSYGDGATT 241
           LETYLRCFC  +PKEWVSWL W E+WYN TF R+L  S FQV+YGRKPP LLSYG+G T+
Sbjct: 767 LETYLRCFCSEKPKEWVSWLSWVEFWYNTTFQRTLRVSSFQVVYGRKPPLLLSYGEGETS 826

Query: 242 NSMLAEQLSARDTVLAALQDQLLLAQQQMKQYADKKRRHVEYNVGEWVLLKIRPYRQLSL 301
           NS L EQL  RD +LAAL++ L+LAQQQMKQYAD KRR VEY VG+ V LKIRP+RQL+L
Sbjct: 827 NSTLDEQLRERDVILAALREHLILAQQQMKQYADCKRRKVEYQVGDLVFLKIRPHRQLTL 885

Query: 302 RKK 305
           R+K
Sbjct: 887 RRK 885

[Close]

BLAST of Cmc11g0303911.1 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 158.3 bits (399), Expect = 1.4e-37
Identity = 96/295 (32.54%), Postives = 156/295 (52.88%), Query Frame = 0


Query: 1    MLSTYHD-SVVGGHSGFLRTYKRLASELYWTGMKADVKKHCEECLVCQRNKTLALSPAGL 60
            ++  YHD ++ GGH G   T  +++   YW  ++  + ++   C+ CQ  K+      GL
Sbjct: 1099 VMRLYHDHTLFGGHFGVTVTLAKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGL 1158

Query: 61   LTPLEIPQQVWSDISMDFIDGLPKAKGFEVVFVVVFVVVDRLSKYSHFMPLKHPYTAKSV 120
            L PL I +  W DISMDF+ GLP          ++ VVVDR SK +HF+  +    A  +
Sbjct: 1159 LQPLPIAEGRWLDISMDFVTGLPPTSN---NLNMILVVVDRFSKRAHFIATRKTLDATQL 1218

Query: 121  ADVFVKEVVQLHGFPSSIVSDRDKVFLSNFWKVMFRLVGTKLNRSTAYHPQSDGQTEVVN 180
             D+  + +   HGFP +I SDRD    ++ ++ + + +G K   S+A HPQ+DGQ+E   
Sbjct: 1219 IDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTI 1278

Query: 181  KGLETYLRCFCGARPKEWVSWLPWAEYWYNITFNRSLGASPFQVLYGRKP--PSLLSYGD 240
            + L   LR +     + W  +LP  E+ YN T  R+LG SPF++  G  P  P++ S  D
Sbjct: 1279 QTLNRLLRAYASTNIQNWHVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTPAIKS-DD 1338

Query: 241  GATTNSMLAEQLSARDTVLA-ALQDQLLLAQQQMKQYADKKRRHVEYNVGEWVLL 292
                 S  A +L+     L    ++QL  AQ +M+   +++R+ +  N+G+ VL+
Sbjct: 1339 EVNARSFTAVELAKHLKALTIQTKEQLEHAQIEMETNNNQRRKPLLLNIGDHVLV 1389

[Close]

BLAST of Cmc11g0303911.1 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 157.9 bits (398), Expect = 1.8e-37
Identity = 96/295 (32.54%), Postives = 156/295 (52.88%), Query Frame = 0


Query: 1    MLSTYHD-SVVGGHSGFLRTYKRLASELYWTGMKADVKKHCEECLVCQRNKTLALSPAGL 60
            ++  YHD ++ GGH G   T  +++   YW  ++  + ++   C+ CQ  K+      GL
Sbjct: 1125 VMRLYHDHTLFGGHFGVTVTLAKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGL 1184

Query: 61   LTPLEIPQQVWSDISMDFIDGLPKAKGFEVVFVVVFVVVDRLSKYSHFMPLKHPYTAKSV 120
            L PL I +  W DISMDF+ GLP          ++ VVVDR SK +HF+  +    A  +
Sbjct: 1185 LQPLPIAEGRWLDISMDFVTGLPPTSN---NLNMILVVVDRFSKRAHFIATRKTLDATQL 1244

Query: 121  ADVFVKEVVQLHGFPSSIVSDRDKVFLSNFWKVMFRLVGTKLNRSTAYHPQSDGQTEVVN 180
             D+  + +   HGFP +I SDRD    ++ ++ + + +G K   S+A HPQ+DGQ+E   
Sbjct: 1245 IDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTI 1304

Query: 181  KGLETYLRCFCGARPKEWVSWLPWAEYWYNITFNRSLGASPFQVLYGRKP--PSLLSYGD 240
            + L   LR +     + W  +LP  E+ YN T  R+LG SPF++  G  P  P++ S  D
Sbjct: 1305 QTLNRLLRAYVSTNIQNWHVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTPAIKS-DD 1364

Query: 241  GATTNSMLAEQLSARDTVLA-ALQDQLLLAQQQMKQYADKKRRHVEYNVGEWVLL 292
                 S  A +L+     L    ++QL  AQ +M+   +++R+ +  N+G+ VL+
Sbjct: 1365 EVNARSFTAVELAKHLKALTIQTKEQLEHAQIEMETNNNQRRKPLLLNIGDHVLV 1415

[Close]

BLAST of Cmc11g0303911.1 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.3e-35
Identity = 87/297 (29.29%), Postives = 141/297 (47.47%), Query Frame = 0


Query: 1    MLSTYHDSVVGGHSGFLRTYKRLASELYWTGMKADVKKHCEECLVCQRNKTLALSPAGLL 60
            ++  YH+     H G       +     W G++  ++++ + C  CQ NK+    P G L
Sbjct: 915  IIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPL 974

Query: 61   TPLEIPQQVWSDISMDFIDGLPKAKGFEVVFVVVFVVVDRLSKYSHFMPLKHPYTAKSVA 120
             P+   ++ W  +SMDFI  LP++ G+      +FVVVDR SK +  +P     TA+  A
Sbjct: 975  QPIPPSERPWESLSMDFITALPESSGYN----ALFVVVDRFSKMAILVPCTKSITAEQTA 1034

Query: 121  DVFVKEVVQLHGFPSSIVSDRDKVFLSNFWKVMFRLVGTKLNRSTAYHPQSDGQTEVVNK 180
             +F + V+   G P  I++D D +F S  WK         +  S  Y PQ+DGQTE  N+
Sbjct: 1035 RMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQ 1094

Query: 181  GLETYLRCFCGARPKEWVSWLPWAEYWYNITFNRSLGASPFQVLY----GRKPPSLLSYG 240
             +E  LRC C   P  WV  +   +  YN   + +   +PF++++       P  L S+ 
Sbjct: 1095 TVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFS 1154

Query: 241  DGATTNSMLAEQLSARDTVLAALQDQLLLAQQQMKQYADKKRRHV-EYNVGEWVLLK 293
            D    NS    Q      V   +++ L     +MK+Y D K + + E+  G+ V++K
Sbjct: 1155 DKTDENSQETIQ------VFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK 1201

[Close]

BLAST of Cmc11g0303911.1 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.3e-35
Identity = 87/297 (29.29%), Postives = 141/297 (47.47%), Query Frame = 0


Query: 1    MLSTYHDSVVGGHSGFLRTYKRLASELYWTGMKADVKKHCEECLVCQRNKTLALSPAGLL 60
            ++  YH+     H G       +     W G++  ++++ + C  CQ NK+    P G L
Sbjct: 915  IIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPL 974

Query: 61   TPLEIPQQVWSDISMDFIDGLPKAKGFEVVFVVVFVVVDRLSKYSHFMPLKHPYTAKSVA 120
             P+   ++ W  +SMDFI  LP++ G+      +FVVVDR SK +  +P     TA+  A
Sbjct: 975  QPIPPSERPWESLSMDFITALPESSGYN----ALFVVVDRFSKMAILVPCTKSITAEQTA 1034

Query: 121  DVFVKEVVQLHGFPSSIVSDRDKVFLSNFWKVMFRLVGTKLNRSTAYHPQSDGQTEVVNK 180
             +F + V+   G P  I++D D +F S  WK         +  S  Y PQ+DGQTE  N+
Sbjct: 1035 RMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQ 1094

Query: 181  GLETYLRCFCGARPKEWVSWLPWAEYWYNITFNRSLGASPFQVLY----GRKPPSLLSYG 240
             +E  LRC C   P  WV  +   +  YN   + +   +PF++++       P  L S+ 
Sbjct: 1095 TVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFS 1154

Query: 241  DGATTNSMLAEQLSARDTVLAALQDQLLLAQQQMKQYADKKRRHV-EYNVGEWVLLK 293
            D    NS    Q      V   +++ L     +MK+Y D K + + E+  G+ V++K
Sbjct: 1155 DKTDENSQETIQ------VFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK 1201

[Close]

BLAST of Cmc11g0303911.1 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.3e-35
Identity = 87/297 (29.29%), Postives = 141/297 (47.47%), Query Frame = 0


Query: 1    MLSTYHDSVVGGHSGFLRTYKRLASELYWTGMKADVKKHCEECLVCQRNKTLALSPAGLL 60
            ++  YH+     H G       +     W G++  ++++ + C  CQ NK+    P G L
Sbjct: 915  IIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPL 974

Query: 61   TPLEIPQQVWSDISMDFIDGLPKAKGFEVVFVVVFVVVDRLSKYSHFMPLKHPYTAKSVA 120
             P+   ++ W  +SMDFI  LP++ G+      +FVVVDR SK +  +P     TA+  A
Sbjct: 975  QPIPPSERPWESLSMDFITALPESSGYN----ALFVVVDRFSKMAILVPCTKSITAEQTA 1034

Query: 121  DVFVKEVVQLHGFPSSIVSDRDKVFLSNFWKVMFRLVGTKLNRSTAYHPQSDGQTEVVNK 180
             +F + V+   G P  I++D D +F S  WK         +  S  Y PQ+DGQTE  N+
Sbjct: 1035 RMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQ 1094

Query: 181  GLETYLRCFCGARPKEWVSWLPWAEYWYNITFNRSLGASPFQVLY----GRKPPSLLSYG 240
             +E  LRC C   P  WV  +   +  YN   + +   +PF++++       P  L S+ 
Sbjct: 1095 TVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFS 1154

Query: 241  DGATTNSMLAEQLSARDTVLAALQDQLLLAQQQMKQYADKKRRHV-EYNVGEWVLLK 293
            D    NS    Q      V   +++ L     +MK+Y D K + + E+  G+ V++K
Sbjct: 1155 DKTDENSQETIQ------VFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK 1201

[Close]

BLAST of Cmc11g0303911.1 vs. ExPASy TrEMBL
Match: A0A5D3BJ44 (Retrotransposon protein, putative, unclassified OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G001280 PE=4 SV=1)

HSP 1 Score: 522.7 bits (1345), Expect = 1.0e-144
Identity = 246/288 (85.42%), Postives = 265/288 (92.01%), Query Frame = 0


Query: 1    MLSTYHDSVVGGHSGFLRTYKRLASELYWTGMKADVKKHCEECLVCQRNKTLALSPAGLL 60
            +LSTYHDSVVGGHSGFLRTYKRLASELYW  MK DVKK+CEEC+VCQRNKT+ALSPAGLL
Sbjct: 720  ILSTYHDSVVGGHSGFLRTYKRLASELYWPSMKTDVKKYCEECIVCQRNKTMALSPAGLL 779

Query: 61   TPLEIPQQVWSDISMDFIDGLPKAKGFEVVFVVVFVVVDRLSKYSHFMPLKHPYTAKSVA 120
            TPLE+P QVW+DISMDFID LP+AKGFE    VVFVVVDRLSKY+HF+PLKHPYTAKSVA
Sbjct: 780  TPLEVPLQVWNDISMDFIDALPEAKGFE----VVFVVVDRLSKYNHFIPLKHPYTAKSVA 839

Query: 121  DVFVKEVVQLHGFPSSIVSDRDKVFLSNFWKVMFRLVGTKLNRSTAYHPQSDGQTEVVNK 180
            DVFVKEVV+LHGFP+SIVSDRDK+FLSNFWK MFRL GTKLNRSTAYHPQSDGQTEVVN 
Sbjct: 840  DVFVKEVVRLHGFPASIVSDRDKIFLSNFWKEMFRLAGTKLNRSTAYHPQSDGQTEVVNC 899

Query: 181  GLETYLRCFCGARPKEWVSWLPWAEYWYNITFNRSLGASPFQVLYGRKPPSLLSYGDGAT 240
            GLETYLRCFC  RPKEWVSWL WAEYWYN T+NRSLG SPFQVLYGRKPPSLLSYGDG T
Sbjct: 900  GLETYLRCFCSERPKEWVSWLSWAEYWYNTTYNRSLGTSPFQVLYGRKPPSLLSYGDGTT 959

Query: 241  TNSMLAEQLSARDTVLAALQDQLLLAQQQMKQYADKKRRHVEYNVGEW 289
            TNS L +QL  RDT+LA L++QLLLAQQQMKQYADKKRRHVE+NVG+W
Sbjct: 960  TNSTLVDQLKERDTILATLREQLLLAQQQMKQYADKKRRHVEFNVGDW 1003

[Close]

BLAST of Cmc11g0303911.1 vs. ExPASy TrEMBL
Match: A0A5D3DK67 (Transposon Tf2-9 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G00980 PE=4 SV=1)

HSP 1 Score: 503.1 bits (1294), Expect = 8.4e-139
Identity = 235/289 (81.31%), Postives = 263/289 (91.00%), Query Frame = 0


Query: 1    MLSTYHDSVVGGHSGFLRTYKRLASELYWTGMKADVKKHCEECLVCQRNKTLALSPAGLL 60
            ML T+HDS+VGGHSGFL+TYKRLASELYW GMK DV+++CEEC+VCQRNKT+ALSPAGLL
Sbjct: 890  MLHTFHDSMVGGHSGFLQTYKRLASELYWPGMKKDVQEYCEECVVCQRNKTVALSPAGLL 949

Query: 61   TPLEIPQQVWSDISMDFIDGLPKAKGFEVVFVVVFVVVDRLSKYSHFMPLKHPYTAKSVA 120
            TPLE PQQVWS ISMDF++GLPKAKGFE    VV VVVDRLSKY+HF+PLKHPYTAK+VA
Sbjct: 950  TPLETPQQVWSYISMDFVEGLPKAKGFE----VVLVVVDRLSKYNHFIPLKHPYTAKTVA 1009

Query: 121  DVFVKEVVQLHGFPSSIVSDRDKVFLSNFWKVMFRLVGTKLNRSTAYHPQSDGQTEVVNK 180
            +VFVKE+V+LHGFPSSIVSDRDK+FLS FWK MFRL GT+LN+STAYHPQSDGQTEVVN+
Sbjct: 1010 EVFVKEIVRLHGFPSSIVSDRDKIFLSTFWKEMFRLAGTRLNKSTAYHPQSDGQTEVVNR 1069

Query: 181  GLETYLRCFCGARPKEWVSWLPWAEYWYNITFNRSLGASPFQVLYGRKPPSLLSYGDGAT 240
            GLE YLRCFC  +PKEWV WLPWAEYWYN T  RSLG SPFQVLYGRKPPSL+SYG GAT
Sbjct: 1070 GLEIYLRCFCNEKPKEWVLWLPWAEYWYNTTSQRSLGVSPFQVLYGRKPPSLISYGVGAT 1129

Query: 241  TNSMLAEQLSARDTVLAALQDQLLLAQQQMKQYADKKRRHVEYNVGEWV 290
            +NS LAEQLS RDTVLAAL+D LLLAQQQMKQYAD KRRH+EY++G+WV
Sbjct: 1130 SNSTLAEQLSERDTVLAALRDHLLLAQQQMKQYADMKRRHIEYDIGDWV 1174

[Close]

BLAST of Cmc11g0303911.1 vs. ExPASy TrEMBL
Match: A0A5A7V139 (Transposon Tf2-9 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G001800 PE=4 SV=1)

HSP 1 Score: 503.1 bits (1294), Expect = 8.4e-139
Identity = 235/289 (81.31%), Postives = 263/289 (91.00%), Query Frame = 0


Query: 1    MLSTYHDSVVGGHSGFLRTYKRLASELYWTGMKADVKKHCEECLVCQRNKTLALSPAGLL 60
            ML T+HDS+VGGHSGFL+TYKRLASELYW GMK DV+++CEEC+VCQRNKT+ALSPAGLL
Sbjct: 890  MLHTFHDSMVGGHSGFLQTYKRLASELYWPGMKKDVQEYCEECVVCQRNKTVALSPAGLL 949

Query: 61   TPLEIPQQVWSDISMDFIDGLPKAKGFEVVFVVVFVVVDRLSKYSHFMPLKHPYTAKSVA 120
            TPLE PQQVWS ISMDF++GLPKAKGFE    VV VVVDRLSKY+HF+PLKHPYTAK+VA
Sbjct: 950  TPLETPQQVWSYISMDFVEGLPKAKGFE----VVLVVVDRLSKYNHFIPLKHPYTAKTVA 1009

Query: 121  DVFVKEVVQLHGFPSSIVSDRDKVFLSNFWKVMFRLVGTKLNRSTAYHPQSDGQTEVVNK 180
            +VFVKE+V+LHGFPSSIVSDRDK+FLS FWK MFRL GT+LN+STAYHPQSDGQTEVVN+
Sbjct: 1010 EVFVKEIVRLHGFPSSIVSDRDKIFLSTFWKEMFRLAGTRLNKSTAYHPQSDGQTEVVNR 1069

Query: 181  GLETYLRCFCGARPKEWVSWLPWAEYWYNITFNRSLGASPFQVLYGRKPPSLLSYGDGAT 240
            GLE YLRCFC  +PKEWV WLPWAEYWYN T  RSLG SPFQVLYGRKPPSL+SYG GAT
Sbjct: 1070 GLEIYLRCFCNEKPKEWVLWLPWAEYWYNTTSQRSLGVSPFQVLYGRKPPSLISYGVGAT 1129

Query: 241  TNSMLAEQLSARDTVLAALQDQLLLAQQQMKQYADKKRRHVEYNVGEWV 290
            +NS LAEQLS RDTVLAAL+D LLLAQQQMKQYAD KRRH+EY++G+WV
Sbjct: 1130 SNSTLAEQLSERDTVLAALRDHLLLAQQQMKQYADMKRRHIEYDIGDWV 1174

[Close]

BLAST of Cmc11g0303911.1 vs. ExPASy TrEMBL
Match: A0A5D3BJH1 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold316G00220 PE=4 SV=1)

HSP 1 Score: 490.3 bits (1261), Expect = 5.6e-135
Identity = 235/273 (86.08%), Postives = 250/273 (91.58%), Query Frame = 0


Query: 32  MKADVKKHCEECLVCQRNKTLALSPAGLLTPLEIPQQVWSDISMDFIDGLPKAKGFEVVF 91
           MKADVKKHCEEC+VCQRNKT+ALSPAGLLTPLE+P QVW+DISMDFID LPKAKGFE   
Sbjct: 1   MKADVKKHCEECIVCQRNKTMALSPAGLLTPLEVPLQVWNDISMDFIDALPKAKGFE--- 60

Query: 92  VVVFVVVDRLSKYSHFMPLKHPYTAKSVADVFVKEVVQLHGFPSSIVSDRDKVFLSNFWK 151
            VVFVVVDRLSKY+HF+PLKHPYTAKSVADVFVKEVV+LHGFP+SIVSDRDKVFLSNFWK
Sbjct: 61  -VVFVVVDRLSKYNHFIPLKHPYTAKSVADVFVKEVVRLHGFPASIVSDRDKVFLSNFWK 120

Query: 152 VMFRLVGTKLNRSTAYHPQSDGQTEVVNKGLETYLRCFCGARPKEWVSWLPWAEYWYNIT 211
            MFRL G  LNRSTAYHPQSDGQTEVVN+GLETYL CFC  RPKEWVSWLPW EYWYN T
Sbjct: 121 EMFRLAGKNLNRSTAYHPQSDGQTEVVNRGLETYLCCFCSERPKEWVSWLPWTEYWYNTT 180

Query: 212 FNRSLGASPFQVLYGRKPPSLLSYGDGATTNSMLAEQLSARDTVLAALQDQLLLAQQQMK 271
           FNRSLG SPFQVLYGRKPPSLLSYG+G TTNS LA+QL  R TVLAAL++QLLL  QQMK
Sbjct: 181 FNRSLGTSPFQVLYGRKPPSLLSYGNGTTTNSTLADQLKERGTVLAALREQLLLTHQQMK 240

Query: 272 QYADKKRRHVEYNVGEWVLLKIRPYRQLSLRKK 305
           QYADKKRRHVE+NVG+WVLLKIRPYRQLSLRKK
Sbjct: 241 QYADKKRRHVEFNVGDWVLLKIRPYRQLSLRKK 269

[Close]

BLAST of Cmc11g0303911.1 vs. ExPASy TrEMBL
Match: A0A5A7U5F9 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00570 PE=4 SV=1)

HSP 1 Score: 489.2 bits (1258), Expect = 1.3e-134
Identity = 232/303 (76.57%), Postives = 262/303 (86.47%), Query Frame = 0


Query: 2   LSTYHDSVVGGHSGFLRTYKRLASELYWTGMKADVKKHCEECLVCQRNKTLALSPAGLLT 61
           L+T+HDSVVGGHSGFLRTY+RL SELYW GMK DVK+HCEECL CQRNKTLALSP GLL 
Sbjct: 587 LNTFHDSVVGGHSGFLRTYRRLTSELYWEGMKFDVKRHCEECLTCQRNKTLALSPVGLLV 646

Query: 62  PLEIPQQVWSDISMDFIDGLPKAKGFEVVFVVVFVVVDRLSKYSHFMPLKHPYTAKSVAD 121
           PLEIPQQVWSDISMDF++GLPKA+GFE    VV VVVDRLSKY HF+PLKHPY AK+VAD
Sbjct: 647 PLEIPQQVWSDISMDFVEGLPKARGFE----VVLVVVDRLSKYGHFLPLKHPYIAKTVAD 706

Query: 122 VFVKEVVQLHGFPSSIVSDRDKVFLSNFWKVMFRLVGTKLNRSTAYHPQSDGQTEVVNKG 181
           +FVKE+V+L GFPSSIV DRDK F+S+FWK MFRL GTKLN+STAYH QSDGQTEVVN+G
Sbjct: 707 LFVKEIVRLPGFPSSIVFDRDKSFISHFWKEMFRLAGTKLNKSTAYHLQSDGQTEVVNRG 766

Query: 182 LETYLRCFCGARPKEWVSWLPWAEYWYNITFNRSLGASPFQVLYGRKPPSLLSYGDGATT 241
           LETYLRCFC  +PKEWVSWL W E+WYN TF R+L  S FQV+YGRKPP LLSYG+G T+
Sbjct: 767 LETYLRCFCSEKPKEWVSWLSWVEFWYNTTFQRTLRVSSFQVVYGRKPPLLLSYGEGETS 826

Query: 242 NSMLAEQLSARDTVLAALQDQLLLAQQQMKQYADKKRRHVEYNVGEWVLLKIRPYRQLSL 301
           NS L EQL  RD +LAAL++ L+LAQQQMKQYAD KRR VEY VG+ V LKIRP+RQL+L
Sbjct: 827 NSTLDEQLRERDVILAALREHLILAQQQMKQYADCKRRKVEYQVGDLVFLKIRPHRQLTL 885

Query: 302 RKK 305
           R+K
Sbjct: 887 RRK 885

The following BLAST results are available for this feature:

BLAST of Cmc11g0303911.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ98385.1	2.1e-144	85.42	retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa]	[more]
TYK24006.1	1.7e-138	81.31	Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa]	[more]
KAA0061922.1	1.7e-138	81.31	Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa]	[more]
KAA0032312.1	1.2e-134	86.08	Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYJ99433.1 Tran...	[more]
KAA0050450.1	2.6e-134	76.57	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc11g0303911.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	1.4e-37	32.54	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	1.8e-37	32.54	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q9UR07	1.3e-35	29.29	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	1.3e-35	29.29	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	1.3e-35	29.29	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc11g0303911.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BJ44	1.0e-144	85.42	Retrotransposon protein, putative, unclassified OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3DK67	8.4e-139	81.31	Transposon Tf2-9 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7V139	8.4e-139	81.31	Transposon Tf2-9 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5D3BJH1	5.6e-135	86.08	Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7U5F9	1.3e-134	76.57	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of Cmc11g0303911.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 256..276
None	No IPR available	GENE3D	1.10.340.70		coord: 1..50 e-value: 1.5E-12 score: 49.6
None	No IPR available	PANTHER	PTHR45835	YALI0A06105P	coord: 4..234
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 59..267 e-value: 3.9E-48 score: 165.4
IPR041588	Integrase zinc-binding domain	PFAM	PF17921	Integrase_H2C2	coord: 2..51 e-value: 1.3E-16 score: 60.4
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 62..228 score: 16.993366
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 63..224

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc11g0303911	Cmc11g0303911	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0303911.1-exon	Cmc11g0303911.1-exon-CMiso1.1chr11:25475978..25476892	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0303911.1-cds	Cmc11g0303911.1-cds-CMiso1.1chr11:25475978..25476892	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc11g0303911.1	Cmc11g0303911.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding