Cmc11g0303761.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc11g0303761.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr11: 25303979 .. 25304473 (-)
Sequence length	495
RNA-Seq Expression	Cmc11g0303761.1
Synteny	Cmc11g0303761.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGTATTCCTATGATACCACCCCCACTCTAGTTGGATATTGTGATGCTGGCTGGGCAGGTTTAGCTAATGATCGTAAAAGTACGTTTGGAGGTTGCTTCTTTTTGAGAAGCAATTTAATCTCTTGGTTAAGTAAGAAGCAAATCTGTGTTTCTTTATCACCAGCTGAAGCTGAATATATACCTGCAGGTAGTGGTTGTACACAATTGATTTGGATGAAAAATATGTTGCATGAATATGGCTTTGATCAGAACACTATGACGTTGTATTGTGACAATATGAGTGCAATTGATATATCTAAGAATCCTGTTCAACATAGTCAAACTAAGCATATTGATATAAGACACCACTTTATTCGAGAACTAGTTGAAGATAAAGTAATCAAGCTTGATCATATTTGTTCCAATTTACAATTAGCCGATATCTTCACTAAACCTCTGGATGCTAGCTTATTCAAATACTTACGTGTTGGTTTAGGAGTGTGTCGCACTTAA

mRNA sequence

ATGATGTATTCCTATGATACCACCCCCACTCTAGTTGGATATTGTGATGCTGGCTGGGCAGGTTTAGCTAATGATCGTAAAAGTACGTTTGGAGGTTGCTTCTTTTTGAGAAGCAATTTAATCTCTTGGTTAAGTAAGAAGCAAATCTGTGTTTCTTTATCACCAGCTGAAGCTGAATATATACCTGCAGGTAGTGGTTGTACACAATTGATTTGGATGAAAAATATGTTGCATGAATATGGCTTTGATCAGAACACTATGACGTTGTATTGTGACAATATGAGTGCAATTGATATATCTAAGAATCCTGTTCAACATAGTCAAACTAAGCATATTGATATAAGACACCACTTTATTCGAGAACTAGTTGAAGATAAAGTAATCAAGCTTGATCATATTTGTTCCAATTTACAATTAGCCGATATCTTCACTAAACCTCTGGATGCTAGCTTATTCAAATACTTACGTGTTGGTTTAGGAGTGTGTCGCACTTAA

Coding sequence (CDS)

ATGATGTATTCCTATGATACCACCCCCACTCTAGTTGGATATTGTGATGCTGGCTGGGCAGGTTTAGCTAATGATCGTAAAAGTACGTTTGGAGGTTGCTTCTTTTTGAGAAGCAATTTAATCTCTTGGTTAAGTAAGAAGCAAATCTGTGTTTCTTTATCACCAGCTGAAGCTGAATATATACCTGCAGGTAGTGGTTGTACACAATTGATTTGGATGAAAAATATGTTGCATGAATATGGCTTTGATCAGAACACTATGACGTTGTATTGTGACAATATGAGTGCAATTGATATATCTAAGAATCCTGTTCAACATAGTCAAACTAAGCATATTGATATAAGACACCACTTTATTCGAGAACTAGTTGAAGATAAAGTAATCAAGCTTGATCATATTTGTTCCAATTTACAATTAGCCGATATCTTCACTAAACCTCTGGATGCTAGCTTATTCAAATACTTACGTGTTGGTTTAGGAGTGTGTCGCACTTAA

Protein sequence

MMYSYDTTPTLVGYCDAGWAGLANDRKSTFGGCFFLRSNLISWLSKKQICVSLSPAEAEYIPAGSGCTQLIWMKNMLHEYGFDQNTMTLYCDNMSAIDISKNPVQHSQTKHIDIRHHFIRELVEDKVIKLDHICSNLQLADIFTKPLDASLFKYLRVGLGVCRT

Homology

[Close]

BLAST of Cmc11g0303761.1 vs. NCBI nr
Match: KAA0055610.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK24458.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 303.5 bits (776), Expect = 1.1e-78
Identity = 145/164 (88.41%), Postives = 150/164 (91.46%), Query Frame = 0


Query: 1   MMYSYDTTPTLVGYCDAGWAGLANDRKSTFGGCFFLRSNLISWLSKKQICVSLSPAEAEY 60
           MMYSYDTTP LVGYCDA WAG A+DRKST GGCFFL +NLISWLSKKQ CVSLS  EAEY
Sbjct: 120 MMYSYDTTPFLVGYCDADWAGSADDRKSTSGGCFFLGNNLISWLSKKQNCVSLSTTEAEY 179

Query: 61  IPAGSGCTQLIWMKNMLHEYGFDQNTMTLYCDNMSAIDISKNPVQHSQTKHIDIRHHFIR 120
           I AGSGCTQLIWMKNMLHEYGFDQ+TMTLYCDN SAIDISKNPVQHS+TKHIDIRHHFIR
Sbjct: 180 IAAGSGCTQLIWMKNMLHEYGFDQDTMTLYCDNTSAIDISKNPVQHSRTKHIDIRHHFIR 239

Query: 121 ELVEDKVIKLDHICSNLQLADIFTKPLDASLFKYLRVGLGVCRT 165
           ELVEDKVIKLDHI SNLQL DIFTKPLDAS F+YLR GLGVCRT
Sbjct: 240 ELVEDKVIKLDHIRSNLQLVDIFTKPLDASSFEYLRAGLGVCRT 283

[Close]

BLAST of Cmc11g0303761.1 vs. NCBI nr
Match: TYK23188.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 258.8 bits (660), Expect = 3.1e-65
Identity = 124/144 (86.11%), Postives = 132/144 (91.67%), Query Frame = 0


Query: 1   MMYSYDTTPTLVGYCDAGWAGLANDRKSTFGGCFFLRSNLISWLSKKQICVSLSPAEAEY 60
           MMYSYDTTPTLVGYCDA WAGLA+DRKST GGCFFL +NLI WLSKKQ CVSLS  EAEY
Sbjct: 236 MMYSYDTTPTLVGYCDADWAGLADDRKSTSGGCFFLGNNLIYWLSKKQNCVSLSTTEAEY 295

Query: 61  IPAGSGCTQLIWMKNMLHEYGFDQNTMTLYCDNMSAIDISKNPVQHSQTKHIDIRHHFIR 120
           I AGSGCTQLIWM+N+L EYGFDQ+T+TLY DNMSAIDISKNPVQHS+ KHIDIRHHFIR
Sbjct: 296 IVAGSGCTQLIWMENILDEYGFDQHTITLYSDNMSAIDISKNPVQHSRIKHIDIRHHFIR 355

Query: 121 ELVEDKVIKLDHICSNLQLADIFT 145
           ELVEDKVI+LDHI SNLQLADIFT
Sbjct: 356 ELVEDKVIRLDHIRSNLQLADIFT 379

[Close]

BLAST of Cmc11g0303761.1 vs. NCBI nr
Match: TYK03343.1 (uncharacterized protein E5676_scaffold206G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 251.5 bits (641), Expect = 4.9e-63
Identity = 125/147 (85.03%), Postives = 130/147 (88.44%), Query Frame = 0


Query: 1   MMYSYDTTPTLVGYCDAGWAGLANDRKSTFGGCFFLRSNLISWLSKKQICVSLSPAEAEY 60
           MMYSYD TPTL GYCDA WAG A+DRKST GGCFFL +NLIS LSKKQ  VSLS AEAEY
Sbjct: 97  MMYSYDITPTLFGYCDADWAGSADDRKSTSGGCFFLGNNLISSLSKKQNRVSLSIAEAEY 156

Query: 61  IPAGSGCTQLIWMKNMLHEYGFDQNTMTLYCDNMSAIDISKNPVQHSQTKHIDIRHHFIR 120
           I AGSGCTQLIWMKNMLHEY FDQ+TM LYCDNMSAIDISKN VQHS+TK+IDIRHHFIR
Sbjct: 157 IAAGSGCTQLIWMKNMLHEYCFDQDTMRLYCDNMSAIDISKNLVQHSRTKNIDIRHHFIR 216

Query: 121 ELVEDKVIKLDHICSNLQLADIFTKPL 148
           ELVEDKVIKLDHI SNLQL DIFT PL
Sbjct: 217 ELVEDKVIKLDHIRSNLQLVDIFTNPL 243

[Close]

BLAST of Cmc11g0303761.1 vs. NCBI nr
Match: KAA0056181.1 (uncharacterized protein E6C27_scaffold431G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 251.5 bits (641), Expect = 4.9e-63
Identity = 125/147 (85.03%), Postives = 130/147 (88.44%), Query Frame = 0


Query: 1   MMYSYDTTPTLVGYCDAGWAGLANDRKSTFGGCFFLRSNLISWLSKKQICVSLSPAEAEY 60
           MMYSYD TPTL GYCDA WAG A+DRKST GGCFFL +NLIS LSKKQ  VSLS AEAEY
Sbjct: 112 MMYSYDITPTLFGYCDADWAGSADDRKSTSGGCFFLGNNLISSLSKKQNRVSLSIAEAEY 171

Query: 61  IPAGSGCTQLIWMKNMLHEYGFDQNTMTLYCDNMSAIDISKNPVQHSQTKHIDIRHHFIR 120
           I AGSGCTQLIWMKNMLHEY FDQ+TM LYCDNMSAIDISKN VQHS+TK+IDIRHHFIR
Sbjct: 172 IAAGSGCTQLIWMKNMLHEYCFDQDTMRLYCDNMSAIDISKNLVQHSRTKNIDIRHHFIR 231

Query: 121 ELVEDKVIKLDHICSNLQLADIFTKPL 148
           ELVEDKVIKLDHI SNLQL DIFT PL
Sbjct: 232 ELVEDKVIKLDHIRSNLQLVDIFTNPL 258

[Close]

BLAST of Cmc11g0303761.1 vs. NCBI nr
Match: TYK21311.1 (F5J5.1 [Cucumis melo var. makuwa])

HSP 1 Score: 247.3 bits (630), Expect = 9.3e-62
Identity = 118/161 (73.29%), Postives = 130/161 (80.75%), Query Frame = 0


Query: 1   MMYSYDTTPTLVGYCDAGWAGLANDRKSTFGGCFFLRSNLISWLSKKQICVSLSPAEAEY 60
           ++YSYDTT  LVGYCDA W G A+DR+ST  GCFFL      W SKKQICVSLS  E EY
Sbjct: 393 ILYSYDTTSILVGYCDADWVGSADDRESTSSGCFFLG----IWFSKKQICVSLSTVEVEY 452

Query: 61  IPAGSGCTQLIWMKNMLHEYGFDQNTMTLYCDNMSAIDISKNPVQHSQTKHIDIRHHFIR 120
           I  GSGCTQLIWMKNMLHEYG  Q+ MTLYCDNMSAIDISK PVQHSQTKHIDIRHHFIR
Sbjct: 453 IATGSGCTQLIWMKNMLHEYGITQDVMTLYCDNMSAIDISKYPVQHSQTKHIDIRHHFIR 512

Query: 121 ELVEDKVIKLDHICSNLQLADIFTKPLDASLFKYLRVGLGV 162
           EL+E+K+I L H+ S  QLADIFTKPLD + F++LR GLGV
Sbjct: 513 ELIENKIITLQHVRSYSQLADIFTKPLDETTFEHLRAGLGV 549

[Close]

BLAST of Cmc11g0303761.1 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 3.9e-31
Identity = 68/153 (44.44%), Postives = 97/153 (63.40%), Query Frame = 0


Query: 9    PTLVGYCDAGWAGLANDRKSTFGGCFFLRSNLISWLSKKQICVSLSPAEAEYIPAGSGCT 68
            P L GY DA  AG  ++RKS+ G  F      ISW SK Q CV+LS  EAEYI A     
Sbjct: 1173 PILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGK 1232

Query: 69   QLIWMKNMLHEYGFDQNTMTLYCDNMSAIDISKNPVQHSQTKHIDIRHHFIRELVEDKVI 128
            ++IW+K  L E G  Q    +YCD+ SAID+SKN + H++TKHID+R+H+IRE+V+D+ +
Sbjct: 1233 EMIWLKRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESL 1292

Query: 129  KLDHICSNLQLADIFTKPLDASLFKYLRVGLGV 162
            K+  I +N   AD+ TK +  + F+  +  +G+
Sbjct: 1293 KVLKISTNENPADMLTKVVPRNKFELCKELVGM 1325

[Close]

BLAST of Cmc11g0303761.1 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 123.2 bits (308), Expect = 2.6e-27
Identity = 67/153 (43.79%), Postives = 92/153 (60.13%), Query Frame = 0


Query: 11   LVGYCDAGWAGLANDRKSTFGGCF-FLRSNLISWLSKKQICVSLSPAEAEYIPAGSGCTQ 70
            ++GY D+ WAG   DRKST G  F     NLI W +K+Q  V+ S  EAEY+       +
Sbjct: 1248 IIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVRE 1307

Query: 71   LIWMKNMLHEYGFD-QNTMTLYCDNMSAIDISKNPVQHSQTKHIDIRHHFIRELVEDKVI 130
             +W+K +L       +N + +Y DN   I I+ NP  H + KHIDI++HF RE V++ VI
Sbjct: 1308 ALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVI 1367

Query: 131  KLDHICSNLQLADIFTKPLDASLFKYLRVGLGV 162
             L++I +  QLADIFTKPL A+ F  LR  LG+
Sbjct: 1368 CLEYIPTENQLADIFTKPLPAARFVELRDKLGL 1400

[Close]

BLAST of Cmc11g0303761.1 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.3e-23
Identity = 62/157 (39.49%), Postives = 88/157 (56.05%), Query Frame = 0


Query: 8    TPTLVGYCDAGWAGLANDRKSTFGGCFFLRSNLISWLSKKQICVSLSPAEAEYIPAGSGC 67
            T +L  Y DA WAG  +D  ST G   +L  + ISW SKKQ  V  S  EAEY    +  
Sbjct: 1306 TLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTS 1365

Query: 68   TQLIWMKNMLHEYGFD-QNTMTLYCDNMSAIDISKNPVQHSQTKHIDIRHHFIRELVEDK 127
            +++ W+ ++L E G        +YCDN+ A  +  NPV HS+ KHI I +HFIR  V+  
Sbjct: 1366 SEMQWICSLLTELGIRLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSG 1425

Query: 128  VIKLDHICSNLQLADIFTKPLDASLFKYLRVGLGVCR 164
             +++ H+ ++ QLAD  TKPL  + F+     +GV R
Sbjct: 1426 ALRVVHVSTHDQLADTLTKPLSRTAFQNFASKIGVTR 1462

[Close]

BLAST of Cmc11g0303761.1 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.0e-23
Identity = 61/157 (38.85%), Postives = 88/157 (56.05%), Query Frame = 0


Query: 8    TPTLVGYCDAGWAGLANDRKSTFGGCFFLRSNLISWLSKKQICVSLSPAEAEYIPAGSGC 67
            T +L  Y DA WAG  +D  ST G   +L  + ISW SKKQ  V  S  EAEY    +  
Sbjct: 1289 TLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTS 1348

Query: 68   TQLIWMKNMLHEYGFD-QNTMTLYCDNMSAIDISKNPVQHSQTKHIDIRHHFIRELVEDK 127
            ++L W+ ++L E G    +   +YCDN+ A  +  NPV HS+ KHI + +HFIR  V+  
Sbjct: 1349 SELQWICSLLTELGIQLSHPPVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQSG 1408

Query: 128  VIKLDHICSNLQLADIFTKPLDASLFKYLRVGLGVCR 164
             +++ H+ ++ QLAD  TKPL    F+     +GV +
Sbjct: 1409 ALRVVHVSTHDQLADTLTKPLSRVAFQNFSRKIGVIK 1445

[Close]

BLAST of Cmc11g0303761.1 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-08
Identity = 29/66 (43.94%), Postives = 36/66 (54.55%), Query Frame = 0


Query: 8   TPTLVGYCDAGWAGLANDRKSTFGGCFFLRSNLISWLSKKQICVSLSPAEAEYIPAGSGC 67
           T  LVGY DA WAG    R+ST G  F L    +SW SKKQ  V+LS  E EY+      
Sbjct: 68  TAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMALSEAT 127

Query: 68  TQLIWM 74
            + +W+
Sbjct: 128 QEAVWL 133

[Close]

BLAST of Cmc11g0303761.1 vs. ExPASy TrEMBL
Match: A0A5D3DLL1 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold717G00150 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 5.3e-79
Identity = 145/164 (88.41%), Postives = 150/164 (91.46%), Query Frame = 0


Query: 1   MMYSYDTTPTLVGYCDAGWAGLANDRKSTFGGCFFLRSNLISWLSKKQICVSLSPAEAEY 60
           MMYSYDTTP LVGYCDA WAG A+DRKST GGCFFL +NLISWLSKKQ CVSLS  EAEY
Sbjct: 120 MMYSYDTTPFLVGYCDADWAGSADDRKSTSGGCFFLGNNLISWLSKKQNCVSLSTTEAEY 179

Query: 61  IPAGSGCTQLIWMKNMLHEYGFDQNTMTLYCDNMSAIDISKNPVQHSQTKHIDIRHHFIR 120
           I AGSGCTQLIWMKNMLHEYGFDQ+TMTLYCDN SAIDISKNPVQHS+TKHIDIRHHFIR
Sbjct: 180 IAAGSGCTQLIWMKNMLHEYGFDQDTMTLYCDNTSAIDISKNPVQHSRTKHIDIRHHFIR 239

Query: 121 ELVEDKVIKLDHICSNLQLADIFTKPLDASLFKYLRVGLGVCRT 165
           ELVEDKVIKLDHI SNLQL DIFTKPLDAS F+YLR GLGVCRT
Sbjct: 240 ELVEDKVIKLDHIRSNLQLVDIFTKPLDASSFEYLRAGLGVCRT 283

[Close]

BLAST of Cmc11g0303761.1 vs. ExPASy TrEMBL
Match: A0A5D3DI97 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G002180 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.5e-65
Identity = 124/144 (86.11%), Postives = 132/144 (91.67%), Query Frame = 0


Query: 1   MMYSYDTTPTLVGYCDAGWAGLANDRKSTFGGCFFLRSNLISWLSKKQICVSLSPAEAEY 60
           MMYSYDTTPTLVGYCDA WAGLA+DRKST GGCFFL +NLI WLSKKQ CVSLS  EAEY
Sbjct: 236 MMYSYDTTPTLVGYCDADWAGLADDRKSTSGGCFFLGNNLIYWLSKKQNCVSLSTTEAEY 295

Query: 61  IPAGSGCTQLIWMKNMLHEYGFDQNTMTLYCDNMSAIDISKNPVQHSQTKHIDIRHHFIR 120
           I AGSGCTQLIWM+N+L EYGFDQ+T+TLY DNMSAIDISKNPVQHS+ KHIDIRHHFIR
Sbjct: 296 IVAGSGCTQLIWMENILDEYGFDQHTITLYSDNMSAIDISKNPVQHSRIKHIDIRHHFIR 355

Query: 121 ELVEDKVIKLDHICSNLQLADIFT 145
           ELVEDKVI+LDHI SNLQLADIFT
Sbjct: 356 ELVEDKVIRLDHIRSNLQLADIFT 379

[Close]

BLAST of Cmc11g0303761.1 vs. ExPASy TrEMBL
Match: A0A5A7URM6 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold431G00070 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.4e-63
Identity = 125/147 (85.03%), Postives = 130/147 (88.44%), Query Frame = 0


Query: 1   MMYSYDTTPTLVGYCDAGWAGLANDRKSTFGGCFFLRSNLISWLSKKQICVSLSPAEAEY 60
           MMYSYD TPTL GYCDA WAG A+DRKST GGCFFL +NLIS LSKKQ  VSLS AEAEY
Sbjct: 112 MMYSYDITPTLFGYCDADWAGSADDRKSTSGGCFFLGNNLISSLSKKQNRVSLSIAEAEY 171

Query: 61  IPAGSGCTQLIWMKNMLHEYGFDQNTMTLYCDNMSAIDISKNPVQHSQTKHIDIRHHFIR 120
           I AGSGCTQLIWMKNMLHEY FDQ+TM LYCDNMSAIDISKN VQHS+TK+IDIRHHFIR
Sbjct: 172 IAAGSGCTQLIWMKNMLHEYCFDQDTMRLYCDNMSAIDISKNLVQHSRTKNIDIRHHFIR 231

Query: 121 ELVEDKVIKLDHICSNLQLADIFTKPL 148
           ELVEDKVIKLDHI SNLQL DIFT PL
Sbjct: 232 ELVEDKVIKLDHIRSNLQLVDIFTNPL 258

[Close]

BLAST of Cmc11g0303761.1 vs. ExPASy TrEMBL
Match: A0A5D3BUJ1 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold206G00060 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.4e-63
Identity = 125/147 (85.03%), Postives = 130/147 (88.44%), Query Frame = 0


Query: 1   MMYSYDTTPTLVGYCDAGWAGLANDRKSTFGGCFFLRSNLISWLSKKQICVSLSPAEAEY 60
           MMYSYD TPTL GYCDA WAG A+DRKST GGCFFL +NLIS LSKKQ  VSLS AEAEY
Sbjct: 97  MMYSYDITPTLFGYCDADWAGSADDRKSTSGGCFFLGNNLISSLSKKQNRVSLSIAEAEY 156

Query: 61  IPAGSGCTQLIWMKNMLHEYGFDQNTMTLYCDNMSAIDISKNPVQHSQTKHIDIRHHFIR 120
           I AGSGCTQLIWMKNMLHEY FDQ+TM LYCDNMSAIDISKN VQHS+TK+IDIRHHFIR
Sbjct: 157 IAAGSGCTQLIWMKNMLHEYCFDQDTMRLYCDNMSAIDISKNLVQHSRTKNIDIRHHFIR 216

Query: 121 ELVEDKVIKLDHICSNLQLADIFTKPL 148
           ELVEDKVIKLDHI SNLQL DIFT PL
Sbjct: 217 ELVEDKVIKLDHIRSNLQLVDIFTNPL 243

[Close]

BLAST of Cmc11g0303761.1 vs. ExPASy TrEMBL
Match: A0A5D3DCC3 (F5J5.1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1199G00200 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 4.5e-62
Identity = 118/161 (73.29%), Postives = 130/161 (80.75%), Query Frame = 0


Query: 1   MMYSYDTTPTLVGYCDAGWAGLANDRKSTFGGCFFLRSNLISWLSKKQICVSLSPAEAEY 60
           ++YSYDTT  LVGYCDA W G A+DR+ST  GCFFL      W SKKQICVSLS  E EY
Sbjct: 393 ILYSYDTTSILVGYCDADWVGSADDRESTSSGCFFLG----IWFSKKQICVSLSTVEVEY 452

Query: 61  IPAGSGCTQLIWMKNMLHEYGFDQNTMTLYCDNMSAIDISKNPVQHSQTKHIDIRHHFIR 120
           I  GSGCTQLIWMKNMLHEYG  Q+ MTLYCDNMSAIDISK PVQHSQTKHIDIRHHFIR
Sbjct: 453 IATGSGCTQLIWMKNMLHEYGITQDVMTLYCDNMSAIDISKYPVQHSQTKHIDIRHHFIR 512

Query: 121 ELVEDKVIKLDHICSNLQLADIFTKPLDASLFKYLRVGLGV 162
           EL+E+K+I L H+ S  QLADIFTKPLD + F++LR GLGV
Sbjct: 513 ELIENKIITLQHVRSYSQLADIFTKPLDETTFEHLRAGLGV 549

[Close]

BLAST of Cmc11g0303761.1 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 86.7 bits (213), Expect = 1.9e-17
Identity = 48/122 (39.34%), Postives = 66/122 (54.10%), Query Frame = 0


Query: 1   MMYSYDTTPTLVGYCDAGWAGLANDRKSTFGGCFFLRSNLISWLSKKQICVSLSPAEAEY 60
           + YS      L  + DA +    + R+ST G C FL ++LISW SKKQ  VS S AEAEY
Sbjct: 432 LFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEY 491

Query: 61  IPAGSGCTQLIWMKNMLHEYGFDQNTMT-LYCDNMSAIDISKNPVQHSQTKHIDIRHHFI 120
                   +++W+     E     +  T L+CDN +AI I+ N V H +TKHI+   H +
Sbjct: 492 RALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSV 551

Query: 121 RE 122
           RE
Sbjct: 552 RE 553

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BLAST of Cmc11g0303761.1 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 58.2 bits (139), Expect = 7.4e-09
Identity = 26/59 (44.07%), Postives = 34/59 (57.63%), Query Frame = 0


Query: 14  YCDAGWAGLANDRKSTFGGCFFLRSNLISWLSKKQICVSLSPAEAEYIPAGSGCTQLIW 73
           +CD+ WAG  + R+ST G C FL  N+ISW +K+Q  VS S  E EY        +L W
Sbjct: 167 FCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

The following BLAST results are available for this feature:

BLAST of Cmc11g0303761.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0055610.1	1.1e-78	88.41	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK24458.1 gag-pol polyprotein [...	[more]
TYK23188.1	3.1e-65	86.11	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK03343.1	4.9e-63	85.03	uncharacterized protein E5676_scaffold206G00060 [Cucumis melo var. makuwa]	[more]
KAA0056181.1	4.9e-63	85.03	uncharacterized protein E6C27_scaffold431G00070 [Cucumis melo var. makuwa]	[more]
TYK21311.1	9.3e-62	73.29	F5J5.1 [Cucumis melo var. makuwa]	[more]

BLAST of Cmc11g0303761.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	3.9e-31	44.44	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	2.6e-27	43.79	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	2.3e-23	39.49	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	4.0e-23	38.85	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P0CV72	1.2e-08	43.94	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]

BLAST of Cmc11g0303761.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DLL1	5.3e-79	88.41	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold717G...	[more]
A0A5D3DI97	1.5e-65	86.11	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G...	[more]
A0A5A7URM6	2.4e-63	85.03	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v...	[more]
A0A5D3BUJ1	2.4e-63	85.03	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v...	[more]
A0A5D3DCC3	4.5e-62	73.29	F5J5.1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1199G00200 PE=4 S...	[more]

BLAST of Cmc11g0303761.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.9e-17	39.34	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	7.4e-09	44.07	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 43..161
None	No IPR available	PANTHER	PTHR11439:SF343	SUBFAMILY NOT NAMED	coord: 43..161
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 12..147 e-value: 9.9553E-75 score: 218.106

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc11g0303761	Cmc11g0303761	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0303761.1-exon	Cmc11g0303761.1-exon-CMiso1.1chr11:25303979..25304473	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0303761.1-cds	Cmc11g0303761.1-cds-CMiso1.1chr11:25303979..25304473	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc11g0303761.1	Cmc11g0303761.1-protein	polypeptide