Cmc11g0303031.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc11g0303031.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Pol protein
Location	CMiso1.1chr11: 24300468 .. 24301175 (-)
Sequence length	708
RNA-Seq Expression	Cmc11g0303031.1
Synteny	Cmc11g0303031.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACCCGGGTAGTACGAAGATGTATCAGGACCTGAAGCGGGTTTATTGGTGGCTTAATATGAAAAGAGAGGTGGCAGAATTTGTTAGTAAATGCTTGGTGTGTCAGCATGTTAAGGCACCAAGGCAGAAACCAGCGGGTTTATTACAACCCTTGAGCGTACCGAAATGGAAGTGGGAAAACGTGTCCATGGATTTTATTATAGGACTGCCAAGAACTCTGAGGGGTTTTATAGTGATTTGGGTGGTGGTTGACAGGCTTACCAAATCAGCGCACTTCGTTCCGGGTAAATCCACCTATACCACTAGTAAGTGGGCACAGTTGTACATGTCTGAGATAGTGAGACTACATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTCTGGAAGGGTTTGCAGACTGCTATGGGCACGAGGTTAGACTTTAGTACAGCTTTCCATCCACAGACTGACGGTCAGACTGAGCGTCTGAACCAGGTTTTAGAGGATATGTTGCGAGCGTGTACATTGGAATTTCCAGGTAGCTGGGACTCTCACTTGCATTTGATGGAATTTGCTTATAATAACAGTTTTCAGGCTACTATTGGCATGACACCATTTGAGGCCTTGTACGGCAAATGTTGTAGATCCCCTGTTTGTTGGGGTGATGTGGGTGAGCAGAGGTTGATGGGTCTTGAGTTAGTTTAG

mRNA sequence

ATGCACCCGGGTAGTACGAAGATGTATCAGGACCTGAAGCGGGTTTATTGGTGGCTTAATATGAAAAGAGAGGTGGCAGAATTTGTTAGTAAATGCTTGGTGTGTCAGCATGTTAAGGCACCAAGGCAGAAACCAGCGGGTTTATTACAACCCTTGAGCGTACCGAAATGGAAGTGGGAAAACGTGTCCATGGATTTTATTATAGGACTGCCAAGAACTCTGAGGGGTTTTATAGTGATTTGGGTGGTGGTTGACAGGCTTACCAAATCAGCGCACTTCGTTCCGGGTAAATCCACCTATACCACTAGTAAGTGGGCACAGTTGTACATGTCTGAGATAGTGAGACTACATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTCTGGAAGGGTTTGCAGACTGCTATGGGCACGAGGTTAGACTTTAGTACAGCTTTCCATCCACAGACTGACGGTCAGACTGAGCGTCTGAACCAGGTTTTAGAGGATATGTTGCGAGCGTGTACATTGGAATTTCCAGGTAGCTGGGACTCTCACTTGCATTTGATGGAATTTGCTTATAATAACAGTTTTCAGGCTACTATTGGCATGACACCATTTGAGGCCTTGTACGGCAAATGTTGTAGATCCCCTGTTTGTTGGGGTGATGTGGGTGAGCAGAGGTTGATGGGTCTTGAGTTAGTTTAG

Coding sequence (CDS)

ATGCACCCGGGTAGTACGAAGATGTATCAGGACCTGAAGCGGGTTTATTGGTGGCTTAATATGAAAAGAGAGGTGGCAGAATTTGTTAGTAAATGCTTGGTGTGTCAGCATGTTAAGGCACCAAGGCAGAAACCAGCGGGTTTATTACAACCCTTGAGCGTACCGAAATGGAAGTGGGAAAACGTGTCCATGGATTTTATTATAGGACTGCCAAGAACTCTGAGGGGTTTTATAGTGATTTGGGTGGTGGTTGACAGGCTTACCAAATCAGCGCACTTCGTTCCGGGTAAATCCACCTATACCACTAGTAAGTGGGCACAGTTGTACATGTCTGAGATAGTGAGACTACATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTCTGGAAGGGTTTGCAGACTGCTATGGGCACGAGGTTAGACTTTAGTACAGCTTTCCATCCACAGACTGACGGTCAGACTGAGCGTCTGAACCAGGTTTTAGAGGATATGTTGCGAGCGTGTACATTGGAATTTCCAGGTAGCTGGGACTCTCACTTGCATTTGATGGAATTTGCTTATAATAACAGTTTTCAGGCTACTATTGGCATGACACCATTTGAGGCCTTGTACGGCAAATGTTGTAGATCCCCTGTTTGTTGGGGTGATGTGGGTGAGCAGAGGTTGATGGGTCTTGAGTTAGTTTAG

Protein sequence

MHPGSTKMYQDLKRVYWWLNMKREVAEFVSKCLVCQHVKAPRQKPAGLLQPLSVPKWKWENVSMDFIIGLPRTLRGFIVIWVVVDRLTKSAHFVPGKSTYTTSKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACTLEFPGSWDSHLHLMEFAYNNSFQATIGMTPFEALYGKCCRSPVCWGDVGEQRLMGLELV

Homology

[Close]

BLAST of Cmc11g0303031.1 vs. NCBI nr
Match: KAA0025425.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 483.0 bits (1242), Expect = 1.4e-132
Identity = 224/235 (95.32%), Postives = 228/235 (97.02%), Query Frame = 0


Query: 1   MHPGSTKMYQDLKRVYWWLNMKREVAEFVSKCLVCQHVKAPRQKPAGLLQPLSVPKWKWE 60
           MHPGSTKMYQDLKRVYWW NMKREVAEFVSKCLVCQ VKAPRQKPAGLLQPLS+P+WKWE
Sbjct: 78  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWE 137

Query: 61  NVSMDFIIGLPRTLRGFIVIWVVVDRLTKSAHFVPGKSTYTTSKWAQLYMSEIVRLHGVP 120
           NVSMDFI GLPRTLRGF VIWVVVDRLTKSAHFVPGKSTYT SKWAQLYMSEIVRLHGVP
Sbjct: 138 NVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP 197

Query: 121 VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACTLEFP 180
           VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRAC LEFP
Sbjct: 198 VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFP 257

Query: 181 GSWDSHLHLMEFAYNNSFQATIGMTPFEALYGKCCRSPVCWGDVGEQRLMGLELV 236
           GSWDSHLHLMEFAYNNS+QATIGM PFEALYGKCCRSPVCWG+VGEQRLMGLELV
Sbjct: 258 GSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGLELV 312

[Close]

BLAST of Cmc11g0303031.1 vs. NCBI nr
Match: KAA0064005.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 481.1 bits (1237), Expect = 5.5e-132
Identity = 223/235 (94.89%), Postives = 228/235 (97.02%), Query Frame = 0


Query: 1   MHPGSTKMYQDLKRVYWWLNMKREVAEFVSKCLVCQHVKAPRQKPAGLLQPLSVPKWKWE 60
           MHPGSTKMYQDLKRVYWW NMKREVAEFVSKCLVCQ VKAPRQKPAGLLQPLS+P+WKWE
Sbjct: 209 MHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWE 268

Query: 61  NVSMDFIIGLPRTLRGFIVIWVVVDRLTKSAHFVPGKSTYTTSKWAQLYMSEIVRLHGVP 120
           NVSMDFI GLPRTLRGF VIWVVVDRLTKSAHFVPGKSTYT SKWAQLYMSEIVRLHGVP
Sbjct: 269 NVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP 328

Query: 121 VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACTLEFP 180
           VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRAC LEFP
Sbjct: 329 VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFP 388

Query: 181 GSWDSHLHLMEFAYNNSFQATIGMTPFEALYGKCCRSPVCWGDVGEQRLMGLELV 236
           GSWDSHLHLMEFAYNNS+QATIGMTPFEALYG+CCRSPVCWG+VGEQRLMG ELV
Sbjct: 389 GSWDSHLHLMEFAYNNSYQATIGMTPFEALYGRCCRSPVCWGEVGEQRLMGPELV 443

[Close]

BLAST of Cmc11g0303031.1 vs. NCBI nr
Match: KAA0031931.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 480.3 bits (1235), Expect = 9.3e-132
Identity = 222/235 (94.47%), Postives = 228/235 (97.02%), Query Frame = 0


Query: 1    MHPGSTKMYQDLKRVYWWLNMKREVAEFVSKCLVCQHVKAPRQKPAGLLQPLSVPKWKWE 60
            MHPGSTKMYQDLKRVYWW NMKREVAEFVSKCLVCQ VKAPRQKPAGLLQPLS+P+WKWE
Sbjct: 1464 MHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWE 1523

Query: 61   NVSMDFIIGLPRTLRGFIVIWVVVDRLTKSAHFVPGKSTYTTSKWAQLYMSEIVRLHGVP 120
            N+SMDFI GLPRTLRGFIVIWVVVDRLTKSAHFVPGKSTYT SKWAQLYMSEIVRLHGVP
Sbjct: 1524 NMSMDFITGLPRTLRGFIVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP 1583

Query: 121  VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACTLEFP 180
            VSIV DRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRAC LEFP
Sbjct: 1584 VSIVFDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFP 1643

Query: 181  GSWDSHLHLMEFAYNNSFQATIGMTPFEALYGKCCRSPVCWGDVGEQRLMGLELV 236
            GSWDSHLHLMEFAYNNS+QATIGMTPFEALYGKCCRSP+CWG+VGEQRLMG ELV
Sbjct: 1644 GSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPICWGEVGEQRLMGPELV 1698

[Close]

BLAST of Cmc11g0303031.1 vs. NCBI nr
Match: KAA0060848.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 479.6 bits (1233), Expect = 1.6e-131
Identity = 223/235 (94.89%), Postives = 227/235 (96.60%), Query Frame = 0


Query: 1   MHPGSTKMYQDLKRVYWWLNMKREVAEFVSKCLVCQHVKAPRQKPAGLLQPLSVPKWKWE 60
           MHPGSTKMYQDLKRVYWW NMKREVAEFVSKCLVCQ VKAPRQKPAGLLQPLS+P+WKWE
Sbjct: 143 MHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWE 202

Query: 61  NVSMDFIIGLPRTLRGFIVIWVVVDRLTKSAHFVPGKSTYTTSKWAQLYMSEIVRLHGVP 120
           NVSMDFIIGLPRTLRGF VIWVVVDRLTKSAHFVPGKSTYT SKWAQLYMSEIVRLHGVP
Sbjct: 203 NVSMDFIIGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP 262

Query: 121 VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACTLEFP 180
           VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRAC LEFP
Sbjct: 263 VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFP 322

Query: 181 GSWDSHLHLMEFAYNNSFQATIGMTPFEALYGKCCRSPVCWGDVGEQRLMGLELV 236
           GSWDSHLHLMEFAYNNS+QATIGM PFEALYGKCCRSPVCW +VGEQRLMG ELV
Sbjct: 323 GSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWDEVGEQRLMGPELV 377

[Close]

BLAST of Cmc11g0303031.1 vs. NCBI nr
Match: KAA0047043.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 479.2 bits (1232), Expect = 2.1e-131
Identity = 222/235 (94.47%), Postives = 227/235 (96.60%), Query Frame = 0


Query: 1   MHPGSTKMYQDLKRVYWWLNMKREVAEFVSKCLVCQHVKAPRQKPAGLLQPLSVPKWKWE 60
           MHPGSTKMYQDLKRVYWW NMKREVAEFVS+CLVCQ VKAPRQKPAGLLQPLS+P+WKWE
Sbjct: 143 MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWE 202

Query: 61  NVSMDFIIGLPRTLRGFIVIWVVVDRLTKSAHFVPGKSTYTTSKWAQLYMSEIVRLHGVP 120
           NVSMDFI GLPRTLRGF VIWVVVDRLTKSAHFVPGKSTYT SKWAQLYMSEIVRLHGVP
Sbjct: 203 NVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP 262

Query: 121 VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACTLEFP 180
           VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRAC LEFP
Sbjct: 263 VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFP 322

Query: 181 GSWDSHLHLMEFAYNNSFQATIGMTPFEALYGKCCRSPVCWGDVGEQRLMGLELV 236
           GSWDSHLHLMEFAYNNS+QATIGM PFEALYGKCCRSPVCWG+VGEQRLMG ELV
Sbjct: 323 GSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELV 377

[Close]

BLAST of Cmc11g0303031.1 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 161.0 bits (406), Expect = 1.6e-38
Identity = 80/222 (36.04%), Postives = 122/222 (54.95%), Query Frame = 0


Query: 2    HPGSTKMYQDLKRVYWWLNMKREVAEFVSKCLVCQHVKAPRQKPAGLLQPLSVPKWKWEN 61
            H G T     +  +Y+W  ++  + +++  C+ CQ +K+ R +  GLLQPL + + +W +
Sbjct: 1112 HFGVTVTLAKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLD 1171

Query: 62   VSMDFIIGLPRTLRGFIVIWVVVDRLTKSAHFVPGKSTYTTSKWAQLYMSEIVRLHGVPV 121
            +SMDF+ GLP T     +I VVVDR +K AHF+  + T   ++   L    I   HG P 
Sbjct: 1172 ISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPR 1231

Query: 122  SIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACTLEFPG 181
            +I SDRD R T+  ++ L   +G +   S+A HPQTDGQ+ER  Q L  +LRA       
Sbjct: 1232 TITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYASTNIQ 1291

Query: 182  SWDSHLHLMEFAYNNSFQATIGMTPFEALYGKCCRSPVCWGD 224
            +W  +L  +EF YN++   T+G +PFE   G    +P    D
Sbjct: 1292 NWHVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTPAIKSD 1333

[Close]

BLAST of Cmc11g0303031.1 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 161.0 bits (406), Expect = 1.6e-38
Identity = 80/222 (36.04%), Postives = 122/222 (54.95%), Query Frame = 0


Query: 2    HPGSTKMYQDLKRVYWWLNMKREVAEFVSKCLVCQHVKAPRQKPAGLLQPLSVPKWKWEN 61
            H G T     +  +Y+W  ++  + +++  C+ CQ +K+ R +  GLLQPL + + +W +
Sbjct: 1138 HFGVTVTLAKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLD 1197

Query: 62   VSMDFIIGLPRTLRGFIVIWVVVDRLTKSAHFVPGKSTYTTSKWAQLYMSEIVRLHGVPV 121
            +SMDF+ GLP T     +I VVVDR +K AHF+  + T   ++   L    I   HG P 
Sbjct: 1198 ISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPR 1257

Query: 122  SIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACTLEFPG 181
            +I SDRD R T+  ++ L   +G +   S+A HPQTDGQ+ER  Q L  +LRA       
Sbjct: 1258 TITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYVSTNIQ 1317

Query: 182  SWDSHLHLMEFAYNNSFQATIGMTPFEALYGKCCRSPVCWGD 224
            +W  +L  +EF YN++   T+G +PFE   G    +P    D
Sbjct: 1318 NWHVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTPAIKSD 1359

[Close]

BLAST of Cmc11g0303031.1 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.1e-38
Identity = 76/211 (36.02%), Postives = 119/211 (56.40%), Query Frame = 0


Query: 1    MHPGSTKMYQDLKRVYWWLNMKREVAEFVSKCLVCQHVKAPRQKPAGLLQPLSVPKWKWE 60
            +HPG   +   + R + W  +++++ E+V  C  CQ  K+   KP G LQP+   +  WE
Sbjct: 926  IHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWE 985

Query: 61   NVSMDFIIGLPRTLRGFIVIWVVVDRLTKSAHFVPGKSTYTTSKWAQLYMSEIVRLHGVP 120
            ++SMDFI  LP +  G+  ++VVVDR +K A  VP   + T  + A+++   ++   G P
Sbjct: 986  SLSMDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNP 1045

Query: 121  VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACTLEFP 180
              I++D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +LR      P
Sbjct: 1046 KEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHP 1105

Query: 181  GSWDSHLHLMEFAYNNSFQATIGMTPFEALY 212
             +W  H+ L++ +YNN+  +   MTPFE ++
Sbjct: 1106 NTWVDHISLVQQSYNNAIHSATQMTPFEIVH 1135

[Close]

BLAST of Cmc11g0303031.1 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.1e-38
Identity = 76/211 (36.02%), Postives = 119/211 (56.40%), Query Frame = 0


Query: 1    MHPGSTKMYQDLKRVYWWLNMKREVAEFVSKCLVCQHVKAPRQKPAGLLQPLSVPKWKWE 60
            +HPG   +   + R + W  +++++ E+V  C  CQ  K+   KP G LQP+   +  WE
Sbjct: 926  IHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWE 985

Query: 61   NVSMDFIIGLPRTLRGFIVIWVVVDRLTKSAHFVPGKSTYTTSKWAQLYMSEIVRLHGVP 120
            ++SMDFI  LP +  G+  ++VVVDR +K A  VP   + T  + A+++   ++   G P
Sbjct: 986  SLSMDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNP 1045

Query: 121  VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACTLEFP 180
              I++D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +LR      P
Sbjct: 1046 KEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHP 1105

Query: 181  GSWDSHLHLMEFAYNNSFQATIGMTPFEALY 212
             +W  H+ L++ +YNN+  +   MTPFE ++
Sbjct: 1106 NTWVDHISLVQQSYNNAIHSATQMTPFEIVH 1135

[Close]

BLAST of Cmc11g0303031.1 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.1e-38
Identity = 76/211 (36.02%), Postives = 119/211 (56.40%), Query Frame = 0


Query: 1    MHPGSTKMYQDLKRVYWWLNMKREVAEFVSKCLVCQHVKAPRQKPAGLLQPLSVPKWKWE 60
            +HPG   +   + R + W  +++++ E+V  C  CQ  K+   KP G LQP+   +  WE
Sbjct: 926  IHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWE 985

Query: 61   NVSMDFIIGLPRTLRGFIVIWVVVDRLTKSAHFVPGKSTYTTSKWAQLYMSEIVRLHGVP 120
            ++SMDFI  LP +  G+  ++VVVDR +K A  VP   + T  + A+++   ++   G P
Sbjct: 986  SLSMDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNP 1045

Query: 121  VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACTLEFP 180
              I++D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +LR      P
Sbjct: 1046 KEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHP 1105

Query: 181  GSWDSHLHLMEFAYNNSFQATIGMTPFEALY 212
             +W  H+ L++ +YNN+  +   MTPFE ++
Sbjct: 1106 NTWVDHISLVQQSYNNAIHSATQMTPFEIVH 1135

[Close]

BLAST of Cmc11g0303031.1 vs. ExPASy TrEMBL
Match: A0A5A7SLT0 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold417G00090 PE=4 SV=1)

HSP 1 Score: 483.0 bits (1242), Expect = 7.0e-133
Identity = 224/235 (95.32%), Postives = 228/235 (97.02%), Query Frame = 0


Query: 1   MHPGSTKMYQDLKRVYWWLNMKREVAEFVSKCLVCQHVKAPRQKPAGLLQPLSVPKWKWE 60
           MHPGSTKMYQDLKRVYWW NMKREVAEFVSKCLVCQ VKAPRQKPAGLLQPLS+P+WKWE
Sbjct: 78  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWE 137

Query: 61  NVSMDFIIGLPRTLRGFIVIWVVVDRLTKSAHFVPGKSTYTTSKWAQLYMSEIVRLHGVP 120
           NVSMDFI GLPRTLRGF VIWVVVDRLTKSAHFVPGKSTYT SKWAQLYMSEIVRLHGVP
Sbjct: 138 NVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP 197

Query: 121 VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACTLEFP 180
           VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRAC LEFP
Sbjct: 198 VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFP 257

Query: 181 GSWDSHLHLMEFAYNNSFQATIGMTPFEALYGKCCRSPVCWGDVGEQRLMGLELV 236
           GSWDSHLHLMEFAYNNS+QATIGM PFEALYGKCCRSPVCWG+VGEQRLMGLELV
Sbjct: 258 GSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGLELV 312

[Close]

BLAST of Cmc11g0303031.1 vs. ExPASy TrEMBL
Match: A0A5A7VDP3 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1536G00010 PE=4 SV=1)

HSP 1 Score: 481.1 bits (1237), Expect = 2.6e-132
Identity = 223/235 (94.89%), Postives = 228/235 (97.02%), Query Frame = 0


Query: 1   MHPGSTKMYQDLKRVYWWLNMKREVAEFVSKCLVCQHVKAPRQKPAGLLQPLSVPKWKWE 60
           MHPGSTKMYQDLKRVYWW NMKREVAEFVSKCLVCQ VKAPRQKPAGLLQPLS+P+WKWE
Sbjct: 209 MHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWE 268

Query: 61  NVSMDFIIGLPRTLRGFIVIWVVVDRLTKSAHFVPGKSTYTTSKWAQLYMSEIVRLHGVP 120
           NVSMDFI GLPRTLRGF VIWVVVDRLTKSAHFVPGKSTYT SKWAQLYMSEIVRLHGVP
Sbjct: 269 NVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP 328

Query: 121 VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACTLEFP 180
           VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRAC LEFP
Sbjct: 329 VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFP 388

Query: 181 GSWDSHLHLMEFAYNNSFQATIGMTPFEALYGKCCRSPVCWGDVGEQRLMGLELV 236
           GSWDSHLHLMEFAYNNS+QATIGMTPFEALYG+CCRSPVCWG+VGEQRLMG ELV
Sbjct: 389 GSWDSHLHLMEFAYNNSYQATIGMTPFEALYGRCCRSPVCWGEVGEQRLMGPELV 443

[Close]

BLAST of Cmc11g0303031.1 vs. ExPASy TrEMBL
Match: A0A5A7SQU8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G00040 PE=4 SV=1)

HSP 1 Score: 480.3 bits (1235), Expect = 4.5e-132
Identity = 222/235 (94.47%), Postives = 228/235 (97.02%), Query Frame = 0


Query: 1    MHPGSTKMYQDLKRVYWWLNMKREVAEFVSKCLVCQHVKAPRQKPAGLLQPLSVPKWKWE 60
            MHPGSTKMYQDLKRVYWW NMKREVAEFVSKCLVCQ VKAPRQKPAGLLQPLS+P+WKWE
Sbjct: 1464 MHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWE 1523

Query: 61   NVSMDFIIGLPRTLRGFIVIWVVVDRLTKSAHFVPGKSTYTTSKWAQLYMSEIVRLHGVP 120
            N+SMDFI GLPRTLRGFIVIWVVVDRLTKSAHFVPGKSTYT SKWAQLYMSEIVRLHGVP
Sbjct: 1524 NMSMDFITGLPRTLRGFIVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP 1583

Query: 121  VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACTLEFP 180
            VSIV DRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRAC LEFP
Sbjct: 1584 VSIVFDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFP 1643

Query: 181  GSWDSHLHLMEFAYNNSFQATIGMTPFEALYGKCCRSPVCWGDVGEQRLMGLELV 236
            GSWDSHLHLMEFAYNNS+QATIGMTPFEALYGKCCRSP+CWG+VGEQRLMG ELV
Sbjct: 1644 GSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPICWGEVGEQRLMGPELV 1698

[Close]

BLAST of Cmc11g0303031.1 vs. ExPASy TrEMBL
Match: A0A5A7UZZ4 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold137G00810 PE=4 SV=1)

HSP 1 Score: 479.6 bits (1233), Expect = 7.7e-132
Identity = 223/235 (94.89%), Postives = 227/235 (96.60%), Query Frame = 0


Query: 1   MHPGSTKMYQDLKRVYWWLNMKREVAEFVSKCLVCQHVKAPRQKPAGLLQPLSVPKWKWE 60
           MHPGSTKMYQDLKRVYWW NMKREVAEFVSKCLVCQ VKAPRQKPAGLLQPLS+P+WKWE
Sbjct: 143 MHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWE 202

Query: 61  NVSMDFIIGLPRTLRGFIVIWVVVDRLTKSAHFVPGKSTYTTSKWAQLYMSEIVRLHGVP 120
           NVSMDFIIGLPRTLRGF VIWVVVDRLTKSAHFVPGKSTYT SKWAQLYMSEIVRLHGVP
Sbjct: 203 NVSMDFIIGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP 262

Query: 121 VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACTLEFP 180
           VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRAC LEFP
Sbjct: 263 VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFP 322

Query: 181 GSWDSHLHLMEFAYNNSFQATIGMTPFEALYGKCCRSPVCWGDVGEQRLMGLELV 236
           GSWDSHLHLMEFAYNNS+QATIGM PFEALYGKCCRSPVCW +VGEQRLMG ELV
Sbjct: 323 GSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWDEVGEQRLMGPELV 377

[Close]

BLAST of Cmc11g0303031.1 vs. ExPASy TrEMBL
Match: A0A5A7SZD6 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G001250 PE=4 SV=1)

HSP 1 Score: 479.2 bits (1232), Expect = 1.0e-131
Identity = 222/235 (94.47%), Postives = 227/235 (96.60%), Query Frame = 0


Query: 1   MHPGSTKMYQDLKRVYWWLNMKREVAEFVSKCLVCQHVKAPRQKPAGLLQPLSVPKWKWE 60
           MHPGSTKMYQDLKRVYWW NMKREVAEFVSKCLVCQ VKAPRQKPAGLLQPLS+P+WKWE
Sbjct: 399 MHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWE 458

Query: 61  NVSMDFIIGLPRTLRGFIVIWVVVDRLTKSAHFVPGKSTYTTSKWAQLYMSEIVRLHGVP 120
           NVSMDFI GLPRTLRGF VIWVVVDRLTKSAHFVPGKSTYT SKWAQLYMSEIVRLHGVP
Sbjct: 459 NVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP 518

Query: 121 VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACTLEFP 180
           VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRAC LEFP
Sbjct: 519 VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFP 578

Query: 181 GSWDSHLHLMEFAYNNSFQATIGMTPFEALYGKCCRSPVCWGDVGEQRLMGLELV 236
           GSWD+HLHLMEFAYNNS+QATIGM PFEALYGKCCRSPVCWG+VGEQRLMG ELV
Sbjct: 579 GSWDAHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELV 633

The following BLAST results are available for this feature:

BLAST of Cmc11g0303031.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025425.1	1.4e-132	95.32	pol protein [Cucumis melo var. makuwa]	[more]
KAA0064005.1	5.5e-132	94.89	pol protein [Cucumis melo var. makuwa]	[more]
KAA0031931.1	9.3e-132	94.47	pol protein [Cucumis melo var. makuwa]	[more]
KAA0060848.1	1.6e-131	94.89	pol protein [Cucumis melo var. makuwa]	[more]
KAA0047043.1	2.1e-131	94.47	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc11g0303031.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	1.6e-38	36.04	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	1.6e-38	36.04	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q9UR07	2.1e-38	36.02	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	2.1e-38	36.02	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	2.1e-38	36.02	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc11g0303031.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SLT0	7.0e-133	95.32	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold417G00090 PE...	[more]
A0A5A7VDP3	2.6e-132	94.89	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1536G00010 P...	[more]
A0A5A7SQU8	4.5e-132	94.47	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13...	[more]
A0A5A7UZZ4	7.7e-132	94.89	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold137G00810 PE...	[more]
A0A5A7SZD6	1.0e-131	94.47	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G001250 PE...	[more]

BLAST of Cmc11g0303031.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR041588	Integrase zinc-binding domain	PFAM	PF17921	Integrase_H2C2	coord: 2..40 e-value: 2.5E-13 score: 49.9
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 49..228 e-value: 7.9E-47 score: 161.1
None	No IPR available	GENE3D	1.10.340.70		coord: 1..39 e-value: 4.5E-11 score: 44.8
None	No IPR available	PANTHER	PTHR45835	YALI0A06105P	coord: 1..208
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 51..214 score: 19.191778
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 52..212

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc11g0303031	Cmc11g0303031	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0303031.1-exon	Cmc11g0303031.1-exon-CMiso1.1chr11:24300468..24301175	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0303031.1-cds	Cmc11g0303031.1-cds-CMiso1.1chr11:24300468..24301175	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc11g0303031.1	Cmc11g0303031.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding